GOID TERM ONTOLOGY pValue Genes GO:0009812 flavonoid metabolic process BP 0.000487130688156817 UGT84A1//AT5G20700//IAA28//ATGSTF12//ABCI20//SDR1//ATSR2//AT1G74840//BBX22//AHK4//ECT8//AT2G23910 GO:0009813 flavonoid biosynthetic process BP 0.000830828437041944 UGT84A1//AT5G20700//IAA28//ATGSTF12//ABCI20//SDR1//ATSR2//AT1G74840//BBX22//ECT8//AT2G23910 GO:0042445 hormone metabolic process BP 0.00226914630581589 AAO1//AtYUC6//AT4G32860//ATCKX4//YUC8//CYP90D1//AT3G24040//LAX3//AT1G49500//LSH7//AT2G29660//AT2G26730 GO:0042446 hormone biosynthetic process BP 0.00250896182803497 AAO1//AtYUC6//AT4G32860//YUC8//CYP90D1//AT3G24040//LAX3//AT1G49500//LSH7//AT2G29660//AT2G26730 GO:0010817 regulation of hormone levels BP 0.00290795389100647 AAO1//AtYUC6//AT3G56370//AT4G32860//ATCKX4//YUC8//CYP90D1//AT3G24040//LAX3//ARAC4//AT1G49500//LSH7//AT2G29660//WLIM2a//AT2G26730 GO:0009411 response to UV BP 0.00319213205583323 UGT84A1//EFO2//ATGSTF12//ABCI20//SDR1//PHR1//LAX3//ARAC4//AGL3//ATREV3//AT2G23910//WLIM2a GO:0010359 regulation of anion channel activity BP 0.00454779452652039 UGT72E2//AT1G12160//AT2G18980 GO:1903959 regulation of anion transmembrane transp... BP 0.00454779452652039 UGT72E2//AT1G12160//AT2G18980 GO:0006694 steroid biosynthetic process BP 0.00540957992330285 AT5G64500//TTL4//AT2G33630//CYP90D1//AT3G24040//LAX3//AtCXE5//ATSYTE//AT2G29660//AT2G26730 GO:0022898 regulation of transmembrane transporter ... BP 0.00591996807038636 UGT72E2//AT1G12160//AT2G18980 GO:0032409 regulation of transporter activity BP 0.00591996807038636 UGT72E2//AT1G12160//AT2G18980 GO:0032412 regulation of ion transmembrane transpor... BP 0.00591996807038636 UGT72E2//AT1G12160//AT2G18980 GO:0034762 regulation of transmembrane transport BP 0.00591996807038636 UGT72E2//AT1G12160//AT2G18980 GO:0034765 regulation of ion transmembrane transpor... BP 0.00591996807038636 UGT72E2//AT1G12160//AT2G18980 GO:0009736 cytokinin-activated signaling pathway BP 0.00636756129601844 ARR11//AT5G58480//AT4G02850//AHK4//AT2G18980 GO:0048573 photoperiodism, flowering BP 0.00648340532627834 FBH3//AT5G19430//AT5G05800//ATSWI3B//BT3//iqd9//BBX7//ELF4 GO:0009416 response to light stimulus BP 0.0066551263500001 AtCLA1//UGT84A1//NDC1//FBH3//AT5G19430//FTSH5//EFO2//ATGSTF12//AT5G07330//AT5G05800//ABCI20//SDR1//GATA4//ACR4//SIG3//AT4G23493//ATSWI3B//BT3//iqd9//BBX7//PHR1//LAX3//ARAC4//ATPAE1//BBX22//HLH1//AGL3//ATREV3//AT2G23910//WLIM2a//ELF4 GO:0010101 post-embryonic root morphogenesis BP 0.00681792040843492 IAA28//ACR4//LAX3//ICK1 GO:0010102 lateral root morphogenesis BP 0.00681792040843492 IAA28//ACR4//LAX3//ICK1 GO:0071368 cellular response to cytokinin stimulus BP 0.00714267955617239 ARR11//AT5G58480//AT4G02850//AHK4//AT2G18980 GO:0009314 response to radiation BP 0.00730565807978011 AtCLA1//UGT84A1//NDC1//FBH3//AT5G19430//FTSH5//EFO2//ATGSTF12//AT5G07330//AT5G05800//ABCI20//SDR1//GATA4//ACR4//SIG3//AT4G23493//ATSWI3B//BT3//iqd9//BBX7//PHR1//LAX3//ARAC4//ATPAE1//BBX22//HLH1//AGL3//ATREV3//AT2G03430//AT2G23910//WLIM2a//ELF4 GO:0010224 response to UV-B BP 0.00779899187289507 UGT84A1//EFO2//ATGSTF12//ABCI20//SDR1//ATREV3//AT2G23910 GO:0009962 regulation of flavonoid biosynthetic pro... BP 0.00831547584842375 AT5G20700//IAA28//ATGSTF12//ATSR2//AT1G74840//ECT8 GO:0009648 photoperiodism BP 0.00904553439161277 FBH3//AT5G19430//AT5G05800//ATSWI3B//BT3//iqd9//BBX7//ELF4 GO:0048443 stamen development BP 0.00904852345774776 AT3G56370//CTF7//CYP90D1//AT1G64500//AGL3//AT1G08590//BRL2 GO:0048466 androecium development BP 0.00904852345774776 AT3G56370//CTF7//CYP90D1//AT1G64500//AGL3//AT1G08590//BRL2 GO:0008356 asymmetric cell division BP 0.0093370597240187 AT5G58480//ACR4//AT3G56370 GO:0008202 steroid metabolic process BP 0.00986593695812055 AT5G64500//TTL4//AT2G33630//CYP90D1//AT3G24040//LAX3//AtCXE5//ATSYTE//AT2G29660//AT2G26730 GO:0046165 alcohol biosynthetic process BP 0.0106278468058741 AAO1//AT5G64500//AT5G63700//PROPEP5//TTL4//CYP90D1//AT3G24040//LAX3//AT1G66330//AtCXE5//ATSYTE//AT2G29660//AT2G26730 GO:0080167 response to karrikin BP 0.0125635669207215 AT5G08050//ABCI20//SDR1//AT3G11600//AT2G23910//ELF4 GO:0009735 response to cytokinin BP 0.0135673168737336 ARR11//ANAC101//AT5G58480//AT4G02850//AHK4//AT2G18980 GO:0009744 response to sucrose BP 0.0163825124022567 UGT84A1//ATGSTF12//ABCI20//SDR1//AT3G49790//AT3G04350//APUM23//AHK4//AT2G23910 GO:0034285 response to disaccharide BP 0.0163825124022567 UGT84A1//ATGSTF12//ABCI20//SDR1//AT3G49790//AT3G04350//APUM23//AHK4//AT2G23910 GO:0010015 root morphogenesis BP 0.0177435539788834 ARR11//IAA28//ANAC101//ACR4//AT3G56370//AT4G05150//AtRHD6//AT3G26720//LAX3//ARAC4//AHK4//ICK1//WLIM2a//AT2G26730 GO:0007167 enzyme linked receptor protein signaling... BP 0.0181433207151943 AT5G43020//AT3G56370//AT1G67510//AT1G27190//BRL2//AT2G26730 GO:0007169 transmembrane receptor protein tyrosine ... BP 0.0181433207151943 AT5G43020//AT3G56370//AT1G67510//AT1G27190//BRL2//AT2G26730 GO:0000041 transition metal ion transport BP 0.0189358117094825 ATIREG3//UGT72E2//ATMYB68//AT3G45710//AT3G24450//AT1G18980//AT1G12160//NRT1.9//AT2G18980 GO:0065007 biological regulation BP 0.0211284667355842 ARR11//AtCLA1//FdC1//FBH3//AT5G20700//ATMGD2//AAO1//AT5G15510//ATIREG3//IAA28//AtYUC6//UGT72E2//ATMYB68//ANAC101//AT5G58480//AtMYB49//AT5G43020//FTSH5//AT5G40320//EFO2//ATGSTF12//AT5G13240//AtRABH1e//AT5G08050//PTL//GATA4//AT3G60580//ACR4//AT3G56370//AtSDIR1//SIG3//AT3G51950//AtbZIP5//AT3G49930//ATMYB48//SSR16//SLP2//AT4G32860//ATCKX4//YUC8//AT4G26660//ATFMN/FHY//AT4G02850//HCF173//ATSWI3B//AtMYB83//AT1G56220//CYP90D1//AT3G24040//BT3//AT1G80850//ICK5//ATSR2//AT3G26720//AT3G24490//ANX1//AT3G07310//BBX7//LAX3//APUM23//AT1G12160//AT1G75340//ARAC4//AT1G26680//ATUGT85A1//AT1G64500//AT1G74840//ATORC4//CLE17//AT1G49500//FUG1//AtRLP3//BBX22//AHK4//AT2G40260//HLH1//AGL3//ECT8//ATRABG3B//AT1G67510//ATREV3//LSH7//AT1G08590//AT1G27190//BRL2//ATMYB7//AT2G03430//NAI1//AT2G29660//CYCP4;1//PYL2//AT2G45730//AT2G18980//SIB2//ICK1//WLIM2a//ELF4//AT2G34810//AT2G26730 GO:0006066 alcohol metabolic process BP 0.0216308868993948 AAO1//AT1G58150//AT5G64500//AT5G63700//PROPEP5//TTL4//CYP90D1//AT3G24040//LAX3//AT1G66330//AtCXE5//ATSYTE//AT2G29660//AT2G26730 GO:0009963 positive regulation of flavonoid biosynt... BP 0.0220550746561048 AT5G20700//IAA28//ATSR2//AT1G74840//ECT8 GO:0010311 lateral root formation BP 0.0220685389602896 ACR4//LAX3//ICK1 GO:0010033 response to organic substance BP 0.0229024105017535 ARR11//UGT84A1//AT5G20700//IAA28//UGT72E2//ATMYB68//ANAC101//AT5G58480//AtMYB49//ATGSTF12//PTL//ABCI20//MARD1//SDR1//ACR4//AtSDIR1//AtbZIP5//AT3G49790//ATMYB48//SSR16//YUC8//AT4G02850//AT1G56220//BT3//ATSR2//AGC2//AT3G06770//AT3G04350//AT3G07310//LAX3//APUM23//ATUGT85A1//AT1G74840//ATPAE1//BBX22//AHK4//AT1G23030//AT1G08590//ARL1//ATDABB1//BRL2//ATMYB7//AT2G03430//AT2G23910//PYL2//AT2G18980//ICK1//AT2G34810" GO:0006468 protein phosphorylation BP 0.0230361828588748 AtCLA1//AT5G51770//AT5G43020//ACR4//AT3G56370//AT3G46400//AT4G24810//AT4G05150//HCF173//AT1G66460//ICK5//ATSR2//AGC2//ANX1//AT1G80640//AT1G45160//AT1G79640//AT1G49730//FUG1//AT2G40120//AHK4//AT1G67510//AT1G08590//AT1G27190//BRL2//ICK1//AT2G26730 GO:0043269 regulation of ion transport BP 0.0268295328730312 AtCLA1//UGT72E2//HCF173//AT1G12160//FUG1//AT2G18980 GO:1901700 response to oxygen-containing compound BP 0.0271038195555472 UGT84A1//AT5G20700//ATMYB68//ANAC101//AtMYB49//ATGSTF12//AT5G07330//PTL//ABCI20//MARD1//SDR1//ACR4//AtSDIR1//AT3G49790//ATMYB48//AT3G45710//YUC8//AT4G23493//AT1G56220//BT3//ATSR2//AGC2//AT3G04350//AT3G07310//AT1G18980//APUM23//NRT1.9//ATUGT85A1//AT1G74840//BBX22//AHK4//AT1G23030//ARL1//ATDABB1//BRL2//ATMYB7//HIS1-3//AT2G23910//PYL2//AT2G18980//ICK1//AT2G34810 GO:0006352 DNA-templated transcription, initiation BP 0.0288911175276733 AT5G63700//SIG3//TAF11 GO:0044070 regulation of anion transport BP 0.0288911175276733 UGT72E2//AT1G12160//AT2G18980 GO:0016126 sterol biosynthetic process BP 0.0290889365695858 AT5G64500//TTL4//AT3G24040//LAX3//AtCXE5//ATSYTE//AT2G26730 GO:0009851 auxin biosynthetic process BP 0.0305693120208255 AAO1//AtYUC6//YUC8//AT1G49500 GO:0098656 anion transmembrane transport BP 0.0326732528644874 UGT72E2//AT1G12160//AT2G18980 GO:0010089 xylem development BP 0.0333253864284317 ANAC101//AtMYB49//AT5G53090//ATRABG3B GO:0016125 sterol metabolic process BP 0.0338481357971232 AT5G64500//TTL4//AT3G24040//LAX3//AtCXE5//ATSYTE//AT2G26730 GO:0007166 cell surface receptor signaling pathway BP 0.033937194522711 AT5G43020//AT3G56370//AT1G67510//AT1G27190//BRL2//AT2G26730 GO:0010228 vegetative to reproductive phase transit... BP 0.035137048047443 FBH3//AT5G19430//AT5G05800//ACR4//SSR16//EMB2369//ATSWI3B//BT3//iqd9//BBX7//AT1G66330//ELF4 GO:0009743 response to carbohydrate BP 0.0362647609807096 UGT84A1//AT5G20700//ATGSTF12//ABCI20//SDR1//ACR4//AT3G49790//ATSR2//AT3G04350//APUM23//AHK4//AT2G23910 GO:0000272 polysaccharide catabolic process BP 0.0367001330244527 AT3G56370//SLP2//AT2G26730 GO:0009719 response to endogenous stimulus BP 0.0404855020363739 ARR11//IAA28//ATMYB68//ANAC101//AT5G58480//AtMYB49//PTL//MARD1//ACR4//AtSDIR1//YUC8//AT4G02850//AT1G56220//BT3//AGC2//AT3G07310//LAX3//ATUGT85A1//AT1G74840//BBX22//AHK4//AT1G23030//ARL1//ATDABB1//BRL2//ATMYB7//PYL2//AT2G18980//ICK1//AT2G34810 GO:0006301 postreplication repair BP 0.0409690205410266 GPAT9//AtSDIR1//ATREV3 GO:0007015 actin filament organization BP 0.042162639379588 ANAC101//AT3G26720//ARAC4//AT1G64500//WLIM1//WLIM2a GO:0009741 response to brassinosteroid BP 0.0424375581160194 ANAC101//YUC8//AT1G56220//BRL2 GO:0009746 response to hexose BP 0.0443985437225109 AT5G20700//AT3G49790//ATSR2//AT3G04350//APUM23//AHK4 GO:0010075 regulation of meristem growth BP 0.0443985437225109 ARR11//PTL//AT3G56370//SLP2//BRL2//AT2G26730 GO:0032879 regulation of localization BP 0.0448582373617437 AtCLA1//UGT72E2//HCF173//AT1G56220//AT1G12160//FUG1//AT2G18980 GO:0050896 response to stimulus BP 0.0483656810470924 ARR11//AtCLA1//UGT84A1//NDC1//FBH3//ATSPS2F//AT5G20700//AT5G19430//ATMGD2//ATMES9//IAA28//UGT72E2//ATMYB68//ANAC101//GPAT9//AT5G58480//AtMYB49//AT5G51770//AT5G43020//FTSH5//AT5G40150//AT5G40320//EFO2//ATGSTF12//AtRABH1e//AT5G08050//AT5G07330//AT5G05800//PTL//ABCI20//MARD1//SDR1//GATA4//ACR4//TTL4//AT3G56370//AtSDIR1//SIG3//AtbZIP5//AT3G49790//MDH//ATMYB48//AT3G45710//AT3G45680//SSR16//CTF7//YUC8//ATRGTA1//ATMLO13//AT4G23493//ATFMN/FHY//AT4G02850//ATSWI3B//AT2G40460//AT1G56220//BT3//AT1G80850//iqd9//ATSR2//AT3G26720//AGC2//AT3G06770//AT3G04350//AT3G07310//AT3G11600//BBX7//AT3G07690//JAL33//AT1G18980//PHR1//LAX3//AT1G66330//APUM23//ARAC4//NRT1.9//ATUGT85A1//AT1G74840//ATPAE1//CLE17//AtRLP3//BBX22//ATPAP10//AHK4//HLH1//AGL3//ECT8//ATRABG3B//AT1G67510//ATREV3//AT1G23030//AT1G08590//ARL1//AT1G27190//ATDABB1//BRL2//ATMYB7//MEE14//AT2G03430//HIS1-3//AT2G23910//PYL2//AT2G18980//SIB2//ICK1//WLIM2a//ELF4//AT2G34810//AT2G26730 GO:0034284 response to monosaccharide BP 0.0490892485171931 AT5G20700//AT3G49790//ATSR2//AT3G04350//APUM23//AHK4 GO:0048509 regulation of meristem development BP 0.051136419183132 ARR11//PTL//AT3G56370//SLP2//AHK4//BRL2//AT2G26730 GO:0007020 microtubule nucleation BP 0.052817763714477 GPP2//SLP2//ATMAP65-6//AT2G26730 GO:0035266 meristem growth BP 0.0540742099564203 ARR11//PTL//AT3G56370//SLP2//BRL2//AT2G26730 GO:0051049 regulation of transport BP 0.0540742099564203 AtCLA1//UGT72E2//HCF173//AT1G12160//FUG1//AT2G18980 GO:0046112 nucleobase biosynthetic process BP 0.0554929361393909 APT4//APT2 GO:0009850 auxin metabolic process BP 0.0565579129496809 AAO1//AtYUC6//YUC8//AT1G49500 GO:0048638 regulation of developmental growth BP 0.0596090079298861 ARR11//PTL//AT3G56370//SLP2//ANX1//BRL2//AT2G03430//AT2G26730 GO:0048364 root development BP 0.0608836785958159 ARR11//IAA28//ANAC101//ACR4//AT3G56370//CTF7//AT4G05150//AtRHD6//AT3G26720//LAX3//ARAC4//AHK4//ICK1//WLIM2a//AT2G26730 GO:0009725 response to hormone BP 0.0609794510681613 ARR11//IAA28//ATMYB68//ANAC101//AT5G58480//AtMYB49//MARD1//ACR4//AtSDIR1//YUC8//AT4G02850//AT1G56220//BT3//AT3G07310//LAX3//ATUGT85A1//AT1G74840//BBX22//AHK4//ARL1//ATDABB1//BRL2//ATMYB7//PYL2//AT2G18980//ICK1//AT2G34810 GO:0022622 root system development BP 0.0622957229198071 ARR11//IAA28//ANAC101//ACR4//AT3G56370//CTF7//AT4G05150//AtRHD6//AT3G26720//LAX3//ARAC4//AHK4//ICK1//WLIM2a//AT2G26730 GO:0016310 phosphorylation BP 0.0639774510227859 AtCLA1//AT5G51770//AT5G43020//ACR4//AT3G56370//AT3G46400//AT4G24810//AT4G05150//HCF173//AT1G66460//ICK5//ATSR2//AGC2//ANX1//AT1G80640//AT1G45160//AT1G79640//AT1G49730//FUG1//BBX22//AT2G40120//AHK4//AT1G67510//AT1G08590//AT1G27190//BRL2//AT2G37440//ICK1//AT2G26730 GO:0009112 nucleobase metabolic process BP 0.0642164143695541 APT4//APT2 GO:0046785 microtubule polymerization BP 0.0644532157121115 GPP2//SLP2//ATMAP65-6//AT2G26730 GO:0016132 brassinosteroid biosynthetic process BP 0.0649565286980636 CYP90D1//AT3G24040//LAX3//AT2G29660//AT2G26730 GO:0000724 double-strand break repair via homologou... BP 0.0658075430667861 CTF7//ATREV3//AT2G03430 GO:0000725 recombinational repair BP 0.0658075430667861 CTF7//ATREV3//AT2G03430 GO:0048569 post-embryonic organ development BP 0.066752804055913 IAA28//PTL//ACR4//AT3G56370//SSR16//CTF7//AT4G26660//EMB2369//CYP90D1//BT3//LAX3//AT1G68420//AT1G64500//AGL3//AT1G08590//BRL2//ICK1 GO:0009750 response to fructose BP 0.0683498467353198 AT5G20700//AT3G49790//ATSR2//AT3G04350//AHK4 GO:0016129 phytosteroid biosynthetic process BP 0.0683498467353198 CYP90D1//AT3G24040//LAX3//AT2G29660//AT2G26730 GO:0016131 brassinosteroid metabolic process BP 0.0683498467353198 CYP90D1//AT3G24040//LAX3//AT2G29660//AT2G26730 GO:0006857 oligopeptide transport BP 0.0686059649032558 AT3G45710//AT3G45680//AT2G40460//NRT1.9 GO:0015833 peptide transport BP 0.0686059649032558 AT3G45710//AT3G45680//AT2G40460//NRT1.9 GO:0031109 microtubule polymerization or depolymeri... BP 0.0686059649032558 GPP2//SLP2//ATMAP65-6//AT2G26730 GO:0030036 actin cytoskeleton organization BP 0.0708103862464193 ANAC101//AT3G26720//ARAC4//AT1G64500//WLIM1//WLIM2a GO:0006413 translational initiation BP 0.0714402053161877 HCF173//FUG1//AT2G45730 GO:0016128 phytosteroid metabolic process BP 0.0718397783625807 CYP90D1//AT3G24040//LAX3//AT2G29660//AT2G26730 GO:0008610 lipid biosynthetic process BP 0.0722734857591566 AtCLA1//FdC1//ATSPS2F//ATMGD2//AAO1//AT5G64500//AT5G61670//GPAT9//TTL4//SETH2//AT4G34090//B1//ATFMN/FHY//AT4G05070//AT2G33630//CYP90D1//AT3G24040//LAX3//AtCXE5//FUG1//ATSYTE//AT1G78790//AT1G65510//AT2G29660//AT2G26730 GO:0050794 regulation of cellular process BP 0.0735548014684177 ARR11//AtCLA1//FdC1//FBH3//AT5G20700//ATMGD2//IAA28//UGT72E2//ATMYB68//ANAC101//AT5G58480//AtMYB49//AT5G43020//FTSH5//AT5G40320//AT5G13240//AtRABH1e//AT5G08050//PTL//GATA4//AT3G60580//ACR4//AT3G56370//AtSDIR1//SIG3//AT3G51950//AtbZIP5//AT3G49930//ATMYB48//YUC8//AT4G26660//ATFMN/FHY//AT4G02850//AtMYB83//BT3//ICK5//ATSR2//AT3G26720//AT3G24490//ANX1//AT3G07310//BBX7//AT1G12160//AT1G75340//ARAC4//AT1G26680//ATUGT85A1//AT1G64500//AT1G74840//ATORC4//CLE17//AtRLP3//BBX22//AHK4//AT2G40260//HLH1//AGL3//ATRABG3B//AT1G67510//ATREV3//AT1G08590//AT1G27190//BRL2//ATMYB7//AT2G03430//NAI1//AT2G29660//CYCP4;1//PYL2//AT2G45730//AT2G18980//ICK1//ELF4//AT2G34810//AT2G26730 GO:0048438 floral whorl development BP 0.0770432587161125 PTL//AT3G56370//SSR16//CTF7//AT4G26660//EMB2369//CYP90D1//AT1G68420//AT1G64500//AGL3//AT1G08590//BRL2 GO:0009690 cytokinin metabolic process BP 0.0772814306680399 AT4G32860//ATCKX4//LSH7 GO:0040008 regulation of growth BP 0.0784953167872623 ARR11//PTL//AT3G56370//SLP2//ANX1//BRL2//AT2G03430//AT2G26730 GO:0009888 tissue development BP 0.0793763310451788 ARR11//ANAC101//AtMYB49//AT5G53090//PTL//ACR4//AT3G56370//SLP2//AT4G05150//EMB2369//AtRHD6//ICK5//AT3G26720//LAX3//ARAC4//BLT//AHK4//AGL3//ATRABG3B//AT1G08590//BRL2//CYCP4;1//ICK1//WLIM2a//AT2G26730 GO:0010374 stomatal complex development BP 0.0801808190977479 EMB2369//ICK5//AT1G08590//BRL2//CYCP4;1//ICK1 GO:1901617 organic hydroxy compound biosynthetic pr... BP 0.0819691724031232 AAO1//AT5G64500//AT5G63700//ATGSTF12//PROPEP5//TTL4//CYP90D1//AT3G24040//LAX3//AT1G66330//AtCXE5//ATSYTE//AT2G29660//AT2G26730 GO:1901615 organic hydroxy compound metabolic proce... BP 0.0828260585336324 AAO1//ATMES9//AT1G58150//AT5G64500//AT5G63700//ATGSTF12//PROPEP5//TTL4//CYP90D1//AT3G24040//LAX3//AT1G66330//UGT74F1//SKIP16//AtCXE5//ATSYTE//AT2G29660//AT2G26730