GOID TERM ONTOLOGY pValue Genes GO:0031048 chromatin silencing by small RNA BP 9.29485149623058e-05 FCA//ATCAP-C//ATGSL12//ATK1//AT1G05440//ARP4//AtXRN3//EMB2795 GO:0006342 chromatin silencing BP 0.000466286416220574 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0045814 negative regulation of gene expression, ... BP 0.000518526884914154 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0006346 methylation-dependent chromatin silencin... BP 0.000684405002400216 ATCAP-C//ATGSL12//ATK1//AT1G05440//ARP4//ARF1//EMB2795 GO:0031047 gene silencing by RNA BP 0.00333354584892089 FCA//ATCAP-C//ATGSL12//ATK1//AT1G05440//ARP4//ARF1//AtXRN3//SMC3//EMB2795 GO:0007346 regulation of mitotic cell cycle BP 0.00421791546612973 ATCAP-C//ATK1//TCTP//AT1G05440//EMB2795 GO:0016458 gene silencing BP 0.00434134076989152 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//SMC3//EMB2795 GO:0009553 embryo sac development BP 0.00506063651439026 FCA//AT5G38720//AT3G12340//AT1G80620//AT1G52930//ARP4//AT1G15330//ATRPA1A GO:0009560 embryo sac egg cell differentiation BP 0.00650234593817692 AT5G38720//AT3G12340//AT1G80620//AT1G52930//ARP4//ATRPA1A GO:0007292 female gamete generation BP 0.00686079375127174 AT5G38720//AT3G12340//AT1G80620//AT1G52930//ARP4//ATRPA1A GO:0000086 G2/M transition of mitotic cell cycle BP 0.00710852722796994 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:0010389 regulation of G2/M transition of mitotic... BP 0.00710852722796994 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:0044839 cell cycle G2/M phase transition BP 0.00710852722796994 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:1902749 regulation of cell cycle G2/M phase tran... BP 0.00710852722796994 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:0010267 production of ta-siRNAs involved in RNA ... BP 0.0073788008320419 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:1901987 regulation of cell cycle phase transitio... BP 0.00841504308777924 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:1901990 regulation of mitotic cell cycle phase t... BP 0.00841504308777924 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:0022411 cellular component disassembly BP 0.00876974342566853 ACD5//TCTP//LEA7 GO:0045892 negative regulation of transcription, DN... BP 0.00994486897369011 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0051253 negative regulation of RNA metabolic pro... BP 0.00994486897369011 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.00994486897369011 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:1903507 negative regulation of nucleic acid-temp... BP 0.00994486897369011 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0044770 cell cycle phase transition BP 0.0106543617494098 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:0044772 mitotic cell cycle phase transition BP 0.0106543617494098 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:0045934 negative regulation of nucleobase-contai... BP 0.0111672641481084 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0051172 negative regulation of nitrogen compound... BP 0.0111672641481084 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0014070 response to organic cyclic compound BP 0.0119222455907607 AER//ATTRP1//ATCAP-C//ARA8//ATGSL12//ATWRKY28//ATCPK4//IBR1//FMA//AT3G17120//ANAC055//ATBS1//ARP4//ARF1//SMC3//UGT73B4 GO:0040029 regulation of gene expression, epigeneti... BP 0.0126072894441061 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//SMC3//EMB2795 GO:0022412 cellular process involved in reproductio... BP 0.0134982762489756 AT5G38720//AT3G12340//AT1G80620//AT1G52930//ARP4//ATRPA1A GO:0010558 negative regulation of macromolecule bio... BP 0.0135771292218886 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:2000113 negative regulation of cellular macromol... BP 0.0135771292218886 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0031327 negative regulation of cellular biosynth... BP 0.0139510061370903 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:1903046 meiotic cell cycle process BP 0.0140997072418811 FCA//ATCAP-C//ATK1//ARP4//AtXRN3//ATRPA1A GO:0031324 negative regulation of cellular metaboli... BP 0.0143031652399116 FCA//ATCAP-C//ATGSL12//ATK1//AtPFA-DSP4//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0051567 histone H3-K9 methylation BP 0.0147196051384569 ATCAP-C//ATGSL12//ATK1//AT1G05440//ARP4//EMB2795 GO:0061647 histone H3-K9 modification BP 0.0147196051384569 ATCAP-C//ATGSL12//ATK1//AT1G05440//ARP4//EMB2795 GO:0009890 negative regulation of biosynthetic proc... BP 0.0147218955786032 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//EMB2795 GO:0022402 cell cycle process BP 0.0153459483401593 FCA//BUB3.2//ATCAP-C//ATGSL12//ATK1//TCTP//AT1G05440//ARP4//AtXRN3//SMC3//ATRPA1A//EMB2795 GO:0006305 DNA alkylation BP 0.0166927251778707 ATCAP-C//ATK1//AT1G05440//ARP4//ARF1//EMB2795 GO:0006306 DNA methylation BP 0.0166927251778707 ATCAP-C//ATK1//AT1G05440//ARP4//ARF1//EMB2795 GO:0035196 production of miRNAs involved in gene si... BP 0.0171654246355876 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0044257 cellular protein catabolic process BP 0.0172262796345237 HSP60-2//BUB3.2//AT5G67630//NYC1//UBQ11//AT1G72020//UKL5//AT2G20360//AT2G46520//ATGSTU3 GO:0009561 megagametogenesis BP 0.0173890946808538 AT5G38720//AT3G12340//AT1G80620//AT1G52930//ARP4//ATRPA1A GO:0044265 cellular macromolecule catabolic process BP 0.0179469434893267 HSP60-2//BUB3.2//AT5G67630//NYC1//AT4G10070//UBQ11//AT1G72020//UKL5//AtXRN3//AT2G20360//AT2G46520//ATGSTU3 GO:0044728 DNA methylation or demethylation BP 0.0181052116518242 ATCAP-C//ATK1//AT1G05440//ARP4//ARF1//EMB2795 GO:0007267 cell-cell signaling BP 0.0183980025136105 ATGSL12//ARP4//ARF1//RALFL14 GO:0006304 DNA modification BP 0.0188413188611861 ATCAP-C//ATK1//AT1G05440//ARP4//ARF1//EMB2795 GO:0009790 embryo development BP 0.0195751492847818 FCA//A/N-InvE//emb2735//ATSUFE//AT3G15670//TCTP//AT1G80620//ATBS1//ARP4//LEA7//ATRPA1A//AT2G46140 GO:0007276 gamete generation BP 0.0203744511642209 AT5G38720//AT3G12340//AT1G80620//AT1G52930//ARP4//ATRPA1A GO:0010498 proteasomal protein catabolic process BP 0.0203744511642209 HSP60-2//BUB3.2//AT5G67630//UKL5//AT2G46520//ATGSTU3 GO:0035195 gene silencing by miRNA BP 0.0207711985041625 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0051052 regulation of DNA metabolic process BP 0.0211719375182177 ATCAP-C//ATK1//AT1G05440//AtXRN3//ATRPA1A//EMB2795 GO:0030163 protein catabolic process BP 0.0215567821324282 HSP60-2//BUB3.2//AT5G67630//NYC1//UBQ11//AT1G72020//UKL5//AT2G20360//AT2G46520//ATGSTU3 GO:0006312 mitotic recombination BP 0.0217190750289661 AT3G12340//ARP4//ATRPA1A GO:0030422 production of siRNA involved in RNA inte... BP 0.0217441719284536 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0031050 dsRNA fragmentation BP 0.022746363975707 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0043331 response to dsRNA BP 0.022746363975707 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0070918 production of small RNA involved in gene... BP 0.022746363975707 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0071359 cellular response to dsRNA BP 0.022746363975707 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0006270 DNA replication initiation BP 0.0235683074052601 ATCAP-C//AT1G05440//EMB2795 GO:0048831 regulation of shoot system development BP 0.0235834913636125 FCA//ATCAP-C//ARR10//ATK1//AT1G52930//AT1G05440//ARP4//ATRPA1A//EMB2795 GO:0000413 protein peptidyl-prolyl isomerization BP 0.0239154227171933 FKBP16-2//AT3G12340 GO:0006839 mitochondrial transport BP 0.0248395242024145 AT5G38720//AT3G55640//AT3G20240//UCP3//LSM8 GO:0009892 negative regulation of metabolic process BP 0.0284479919018126 FCA//ATCAP-C//ATGSL12//AT5G11940//ATK1//AtPFA-DSP4//MOM//AT1G05440//ARP4//ARF1//AtXRN3//SMC3//EMB2795 GO:0051321 meiotic cell cycle BP 0.0294220971687856 FCA//ATCAP-C//ATGSL12//ATK1//ARP4//AtXRN3//ATRPA1A GO:0044248 cellular catabolic process BP 0.0302350105552669 HSP60-2//BUB3.2//AER//AT5G67630//ARA8//AT5G39940//A/N-InvE//ATSUFE//ATWRKY28//NYC1//AT4G10070//UBQ11//AT1G72020//ABCE1//UKL5//AT1G02360//ATGA2OX2//AtXRN3//AT1G22800//AT2G20360//AT2G46520//UGT73B4//ATGSTU3 GO:0010605 negative regulation of macromolecule met... BP 0.0305710960952813 FCA//ATCAP-C//ATGSL12//ATK1//AtPFA-DSP4//MOM//AT1G05440//ARP4//ARF1//AtXRN3//SMC3//EMB2795 GO:0051603 proteolysis involved in cellular protein... BP 0.0309524611307442 HSP60-2//BUB3.2//AT5G67630//UBQ11//AT1G72020//UKL5//AT2G20360//AT2G46520//ATGSTU3 GO:0007126 meiotic nuclear division BP 0.0313697100791867 FCA//ATCAP-C//ATK1//ARP4//AtXRN3//ATRPA1A GO:0000280 nuclear division BP 0.033070276751549 FCA//ATCAP-C//ATK1//TCTP//ARP4//AtXRN3//ATRPA1A GO:0051607 defense response to virus BP 0.0331236912681208 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0048523 negative regulation of cellular process BP 0.0335415103036757 FCA//ATCAP-C//ATGSL12//ATK1//AtPFA-DSP4//FMA//ANAC055//MOM//AT1G05440//ARP4//ARF1//AtXRN3//HDG2//EMB2795 GO:0009057 macromolecule catabolic process BP 0.0342227169555206 HSP60-2//BUB3.2//AT5G67630//NYC1//AT4G10070//UBQ11//AT1G72020//UKL5//AtXRN3//AT2G20360//AT2G46520//ATGSTU3 GO:2000241 regulation of reproductive process BP 0.0347831937549681 FCA//ATCAP-C//ARR10//ATK1//AT1G52930//AT1G05440//ARP4//ATRPA1A//EMB2795 GO:0009909 regulation of flower development BP 0.0385882961427674 FCA//ATCAP-C//ATK1//AT1G52930//AT1G05440//ARP4//ATRPA1A//EMB2795 GO:0010629 negative regulation of gene expression BP 0.0389420164938649 FCA//ATCAP-C//ATGSL12//ATK1//MOM//AT1G05440//ARP4//ARF1//AtXRN3//SMC3//EMB2795 GO:0048232 male gamete generation BP 0.0397071592599192 ARP4//ATRPA1A GO:0043414 macromolecule methylation BP 0.0412067551910554 AT5G59850//ATCAP-C//AT5G14600//ATGSL12//ATK1//RACK1C//AT1G52930//AT1G05440//ARP4//ARF1//EMB2795 GO:0007010 cytoskeleton organization BP 0.042481234552657 HSP60-2//AT5G67630//ATGSL12//ATK1//UKL5//TCTP//AT1G05440//AT2G46520//EMB2795 GO:0009793 embryo development ending in seed dorman... BP 0.0425481122550849 FCA//A/N-InvE//emb2735//ATSUFE//AT3G15670//AT1G80620//ARP4//LEA7//ATRPA1A//AT2G46140 GO:0032259 methylation BP 0.0435616275165681 AT5G59850//ATCAP-C//AT5G14600//ATGSL12//ATK1//RACK1C//AT1G52930//AT1G05440//ARP4//ARF1//EMB2795 GO:0010033 response to organic substance BP 0.0450196179046909 BUB3.2//AER//ATDI8//ATTRP1//ATCAP-C//ARA8//ATGSL12//ATST2A//AT3G59080//DIN11//ARR10//ATWRKY28//ATCPK4//IBR1//ABCG11//AT1G72020//FMA//AT3G17120//RACK1C//ANAC055//TCTP//AT1G02360//ATGA2OX2//ATBS1//RSL4//ARP4//ARF1//LSM8//SMC3//AT2G20360//ATRPA1A//AT2G46520//UGT73B4//ATGSTU3//AT2G38250 GO:0071407 cellular response to organic cyclic comp... BP 0.0478255656409282 ATCAP-C//ARA8//ATGSL12//ATCPK4//FMA//ANAC055//ATBS1//ARP4//ARF1//SMC3 GO:1901699 cellular response to nitrogen compound BP 0.0492737579757092 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0006275 regulation of DNA replication BP 0.0503041666252505 ATCAP-C//ATK1//AT1G05440//EMB2795 GO:0006508 proteolysis BP 0.0505960993111046 HSP60-2//BUB3.2//AT5G67630//AT5G11940//AT3G59080//UBQ11//AT1G72020//UKL5//AT1G53530//AT2G20360//AT2G46520//scpl38//ATGSTU3 GO:0008283 cell proliferation BP 0.051204939246652 ATCAP-C//ATPSK3//TCTP//AT1G05440//AT1G04200//EMB2795 GO:0019953 sexual reproduction BP 0.051204939246652 AT5G38720//AT3G12340//AT1G80620//AT1G52930//ARP4//ATRPA1A GO:0018022 peptidyl-lysine methylation BP 0.0526511792980839 ATCAP-C//ATGSL12//ATK1//AT1G05440//ARP4//EMB2795 GO:0034968 histone lysine methylation BP 0.0526511792980839 ATCAP-C//ATGSL12//ATK1//AT1G05440//ARP4//EMB2795 GO:0018208 peptidyl-proline modification BP 0.0534850140960382 FKBP16-2//AT3G12340 GO:0009615 response to virus BP 0.0543592733504601 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0016246 RNA interference BP 0.0543592733504601 ATCAP-C//ATGSL12//ARP4//ARF1//SMC3 GO:0000003 reproduction BP 0.0554320681520782 FCA//ATCAP-C//AT5G38720//ATGSL12//ATK1//AT3G12340//AT3G15670//AT1G80620//AT1G52930//ARP4//AtXRN3//ATRPA1A GO:0048285 organelle fission BP 0.057150178073408 FCA//ATCAP-C//ATK1//TCTP//ARP4//AtXRN3//ATRPA1A GO:0044703 multi-organism reproductive process BP 0.0575724333368988 AT5G38720//AT3G12340//TCTP//AT1G80620//AT1G52930//ARP4//AT1G11410//AT1G15330//ATRPA1A//scpl38 GO:0006820 anion transport BP 0.0586139387698126 AER//ATFOLT1//ATCLC-C//ARA8//GTR1//ATWRKY28//ABCG11//ALDH1A//AT1G02360//GLIP5 GO:0007059 chromosome segregation BP 0.0597386717107984 FCA//ATCAP-C//AtXRN3//SMC3//ATRPA1A GO:0015711 organic anion transport BP 0.0627151422428897 AER//ATFOLT1//GTR1//ATWRKY28//ABCG11//AT1G02360//GLIP5 GO:0048580 regulation of post-embryonic development BP 0.063506391874071 FCA//ATCAP-C//ARR10//ATK1//AT1G52930//AT1G05440//ARP4//ATRPA1A//EMB2795