GOID TERM ONTOLOGY pValue Genes GO:0055072 iron ion homeostasis BP 0.000470290425689162 At-NEET//ATFER3//ABCB26//ATFER4 GO:0010092 specification of organ identity BP 0.000614426592636616 AGL2//AGL7//AGL5//AGL9 GO:0010093 specification of floral organ identity BP 0.000614426592636616 AGL2//AGL7//AGL5//AGL9 GO:0035670 plant-type ovary development BP 0.00268782057644114 AGL2//AGL8//AT5G60140//AGL7//WAK2//ATFER4//AGL5//AGL9//GIK GO:0048481 ovule development BP 0.00268782057644114 AGL2//AGL8//AT5G60140//AGL7//WAK2//ATFER4//AGL5//AGL9//GIK GO:0055076 transition metal ion homeostasis BP 0.00697178888003337 At-NEET//ATFER3//ABCB26//ATFER4 GO:0019725 cellular homeostasis BP 0.00841048930759657 HCF164//AT5G62290//AT5G57345//ATFER3//ATGLR3.3//CDI3//WAK2//CRR23//ATFER4//AT2G30540 GO:0048878 chemical homeostasis BP 0.00892578083476853 AT5G57345//At-NEET//ATFER3//ATGLR3.3//CDI3//WAK2//ABCB26//CRR23//ATFER4 GO:0055065 metal ion homeostasis BP 0.00978153344487768 At-NEET//ATFER3//ATGLR3.3//ABCB26//ATFER4 GO:0015979 photosynthesis BP 0.0105958598214421 LHCB3//OHP//AT3G61870//ATFER3//CH-42//MEE51//PSAD-1//LHCB2//TAPX//ATFD2//NDF1//CRR23//OE23//ATFER4//OTP51 GO:0043269 regulation of ion transport BP 0.0106307835211787 PDE226//GAD//OHP//LHCB2//ATFD2//OE23//GIK GO:0050801 ion homeostasis BP 0.0122962838729496 AT5G57345//At-NEET//ATFER3//ATGLR3.3//CDI3//ABCB26//CRR23//ATFER4 GO:0042592 homeostatic process BP 0.015032291423838 HCF164//AT5G62290//AT5G57345//At-NEET//ATFER3//ATGLR3.3//CDI3//WAK2//ABCB26//CRR23//ATFER4//AT2G30540 GO:0065008 regulation of biological quality BP 0.0152667867363691 CYP74B2//AT5G13140//HCF164//AT5G62290//AT5G57345//At-NEET//ATFER3//ATRBP31//ENDO5//ATGLR3.3//ATRANGAP2//HEME1//ATICE1//RGLG1//CDI3//WAK2//ABCB26//AT1G12230//7RED//CRR23//AT2G17500//ABH1//ATFER4//PARP1//AT2G30540 GO:0055082 cellular chemical homeostasis BP 0.0153653951962252 AT5G57345//ATFER3//ATGLR3.3//CDI3//WAK2//CRR23//ATFER4 GO:0051186 cofactor metabolic process BP 0.0163456854748026 AT5G16140//PORA//At-NEET//AT3G61870//AT3G53580//AT4G20930//CH-42//NYC1//ATNSI//HEME1//ABCB26//AT1G12230//NDF1//7RED//CRR23//ATSULA//GPPS GO:0010155 regulation of proton transport BP 0.0176703296199 PDE226//OHP//LHCB2//ATFD2//OE23 GO:0048443 stamen development BP 0.0179486616960096 AGL2//AT5G60140//AGL7//AGL5//GIK//AT2G30540 GO:0048466 androecium development BP 0.0179486616960096 AGL2//AT5G60140//AGL7//AGL5//GIK//AT2G30540 GO:0051049 regulation of transport BP 0.0186606059837191 PDE226//GAD//OHP//LHCB2//ATFD2//OE23//GIK GO:0098771 inorganic ion homeostasis BP 0.0214722305227656 At-NEET//ATFER3//ATGLR3.3//ABCB26//ATFER4 GO:0016109 tetraterpenoid biosynthetic process BP 0.0234034074906533 PDE226//CH-42//PDE181//NDF1//ATSULA//AT2G21385 GO:0016117 carotenoid biosynthetic process BP 0.0234034074906533 PDE226//CH-42//PDE181//NDF1//ATSULA//AT2G21385 GO:0042440 pigment metabolic process BP 0.0241733113112569 PDE226//AT5G16140//AGL8//PORA//AT3G61870//CH-42//NYC1//PDE181//ABCB26//NDF1//ATSULA//AT2G21385 GO:0006733 oxidoreduction coenzyme metabolic proces... BP 0.024461804259071 At-NEET//AT3G61870//AT3G53580//AT4G20930//ATNSI//AT1G12230//NDF1//CRR23//ATSULA//GPPS GO:0006081 cellular aldehyde metabolic process BP 0.0249699334890808 At-NEET//AT5G10540//AtKdtA//AT3G61870//AT3G54210//CLB6//AT4G20930//CH-42//ATNSI//AAE7//AT1G12230//NDF1//CRR23//ATSULA//AT2G21385 GO:0010039 response to iron ion BP 0.0256039983903702 ATFER3//ABCB26//ATFER4 GO:0016108 tetraterpenoid metabolic process BP 0.025866035402589 PDE226//CH-42//PDE181//NDF1//ATSULA//AT2G21385 GO:0016116 carotenoid metabolic process BP 0.025866035402589 PDE226//CH-42//PDE181//NDF1//ATSULA//AT2G21385 GO:0090332 stomatal closure BP 0.0259706548289374 CDI3//FAB1C GO:0048440 carpel development BP 0.0260362805990239 AGL2//AGL8//AT5G60140//AGL7//WAK2//ATFER4//AGL5//AGL9//GIK GO:0009773 photosynthetic electron transport in pho... BP 0.0261185267678076 ATFD2//NDF1//CRR23//OE23 GO:0006811 ion transport BP 0.0261714803888369 PDE226//AHA11//AT5G62290//AT5G57345//KAT1//GAD//OHP//ATFER3//GTR1//ENDO5//KAT2//ABCC1//ATGLR3.3//ALMT9//LHCB2//ATCNGC19//CDI3//ATIRT3//ATFD2//AT1G17610//CRR23//VHA-E3//OE23//ATFER4//ATGSTU17//GIK GO:0055080 cation homeostasis BP 0.0266807621984366 AT5G57345//At-NEET//ATFER3//ATGLR3.3//ABCB26//CRR23//ATFER4 GO:0006818 hydrogen transport BP 0.0271596319806914 PDE226//OHP//LHCB2//ATFD2//VHA-E3//OE23 GO:0015992 proton transport BP 0.0271596319806914 PDE226//OHP//LHCB2//ATFD2//VHA-E3//OE23 GO:0048441 petal development BP 0.0281044832965968 AGL2//AT5G60140//AGL7//AGL5 GO:0048465 corolla development BP 0.0281044832965968 AGL2//AT5G60140//AGL7//AGL5 GO:0048449 floral organ formation BP 0.028921418035842 AGL2//AGL7//AGL5//PARP1//AGL9 GO:0048467 gynoecium development BP 0.0297946790769102 AGL2//AGL8//AT5G60140//AGL7//WAK2//ATFER4//AGL5//AGL9//GIK GO:0046148 pigment biosynthetic process BP 0.0304232303751916 PDE226//AT5G16140//AGL8//PORA//AT3G61870//CH-42//PDE181//NDF1//ATSULA//AT2G21385 GO:0007167 enzyme linked receptor protein signaling... BP 0.0305841782662192 AT2G45340//MEE62//AT5G37450//GSO1//ATCLV1 GO:0007169 transmembrane receptor protein tyrosine ... BP 0.0305841782662192 AT2G45340//MEE62//AT5G37450//GSO1//ATCLV1 GO:0046246 terpene biosynthetic process BP 0.0312097611995282 PDE226//PDE181 GO:0016114 terpenoid biosynthetic process BP 0.0339176222789542 PDE226//NDP1//AtGRF8//CH-42//PDE181//NDF1//ATSULA//AT2G21385//CYP710A2 GO:0006098 pentose-phosphate shunt BP 0.0363000177971084 At-NEET//AT3G61870//AT4G20930//ATNSI//AT1G12230//NDF1//CRR23//ATSULA GO:0051156 glucose 6-phosphate metabolic process BP 0.0363000177971084 At-NEET//AT3G61870//AT4G20930//ATNSI//AT1G12230//NDF1//CRR23//ATSULA GO:0032879 regulation of localization BP 0.0367812603736512 PDE226//GAD//OHP//LHCB2//ATFD2//OE23//GIK GO:0006995 cellular response to nitrogen starvation BP 0.0368252195192799 CRK10//CAT1 GO:0046482 para-aminobenzoic acid metabolic process BP 0.0368252195192799 AT5G25770//AT2G17500 GO:0006739 NADP metabolic process BP 0.0375557513859995 At-NEET//AT3G61870//AT4G20930//ATNSI//AT1G12230//NDF1//CRR23//ATSULA GO:0006873 cellular ion homeostasis BP 0.0390623670492642 AT5G57345//ATFER3//ATGLR3.3//CDI3//CRR23//ATFER4 GO:0046496 nicotinamide nucleotide metabolic proces... BP 0.0414972995364582 At-NEET//AT3G61870//AT4G20930//ATNSI//AT1G12230//NDF1//CRR23//ATSULA GO:0042214 terpene metabolic process BP 0.042794307627382 PDE226//PDE181 GO:0043562 cellular response to nitrogen levels BP 0.042794307627382 CRK10//CAT1 GO:0019362 pyridine nucleotide metabolic process BP 0.0428699844193343 At-NEET//AT3G61870//AT4G20930//ATNSI//AT1G12230//NDF1//CRR23//ATSULA GO:0000302 response to reactive oxygen species BP 0.0445985417973946 RAP2.11//ATFER3//LPPepsilon1//ATFSD1//CDI3//CAT1//ABCB26//AT1G64610//ATFER4 GO:0006812 cation transport BP 0.0462006193734042 PDE226//AHA11//AT5G57345//KAT1//GAD//OHP//ATFER3//ENDO5//KAT2//ATGLR3.3//LHCB2//ATIRT3//ATFD2//CRR23//VHA-E3//OE23//ATFER4//ATGSTU17//GIK GO:0010038 response to metal ion BP 0.0468760896180131 RAP2.11//AT5G26220//GAD//AT5G10540//ATFER3//AT3G46170//ATFSD1//HEME1//ALMT9//CAT1//ABCB26//ATFER4 GO:0001101 response to acid chemical BP 0.0481846220902016 AT5G50915//AGD9//RS5//GAD//ATFSD1//AtGRF8//IQD22//ENDO5//DFL2//AFP3//ATGLR3.3//LHCB2//RGLG1//CDI3//CAT1//WAK2//AT1G17610//AT1G64610//AT1G64150//OE23//ESP//ABH1//atnudt5//PARP1//ATGSTU17//ATEDR1//CYP94C1//ANN3//AT2G30810 GO:0006721 terpenoid metabolic process BP 0.0486090104441592 PDE226//NDP1//AtGRF8//CH-42//PDE181//NDF1//ATSULA//AT2G21385//CYP710A2 GO:0072524 pyridine-containing compound metabolic p... BP 0.0486601308849155 At-NEET//AT3G61870//AT4G20930//ATNSI//AT1G12230//NDF1//CRR23//ATSULA GO:0006083 acetate metabolic process BP 0.0490952169494143 AAE7//AT1G12230 GO:0006518 peptide metabolic process BP 0.0490952169494143 AT5G27430//ATGSTU17 GO:0009631 cold acclimation BP 0.0490952169494143 ATRBP31//TAPX GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 0.0525222069638937 At-NEET//AT3G61870//AT3G54210//CLB6//AT4G20930//CH-42//ATNSI//AT1G12230//NDF1//CRR23//ATSULA//AT2G21385 GO:0009642 response to light intensity BP 0.0533219097852837 OHP//LPPepsilon1//ATFSD1//KAT2//LHCB2//ATFD2//OE23//IAA20 GO:0006979 response to oxidative stress BP 0.0555718694632979 RAP2.11//RS5//ATFER3//LPPepsilon1//ATFSD1//CDI3//CAT1//ABCB26//AT1G64610//ATGPX2//AT2G21640//ATFER4//PARP1 GO:0033993 response to lipid BP 0.0572348610464669 AT5G50915//AGD9//RS5//AtGRF8//IQD22//DFL2//AFP3//CDI3//CAT1//AT1G64610//ABH1//PARP1//ATEDR1//CYP94C1//GIK//AT2G30810 GO:1990267 response to transition metal nanoparticl... BP 0.0588405802722643 ATFER3//ATFSD1//ABCB26//ATFER4 GO:0048827 phyllome development BP 0.06137166290544 AGL2//AGL8//AT5G60140//CRR21//At-NEET//ATFER3//ATRBP31//AtGRF8//AGL7//WAK2//ESP//ATFER4//AGL5//AGL9//CDC27b//GIK//IAA20//AT2G30540 GO:0006743 ubiquinone metabolic process BP 0.0626096436187431 AT3G53580//GPPS GO:0006744 ubiquinone biosynthetic process BP 0.0626096436187431 AT3G53580//GPPS GO:0010020 chloroplast fission BP 0.0626096436187431 MCD1//ATSULA GO:0022900 electron transport chain BP 0.065421365824572 ATFD2//NDF1//CRR23//OE23//SDH1-2 GO:0006875 cellular metal ion homeostasis BP 0.0691911728857195 ATFER3//ATGLR3.3//ATFER4 GO:0043572 plastid fission BP 0.069783831405418 MCD1//ATSULA GO:0048646 anatomical structure formation involved ... BP 0.0699774200590788 AGL2//AT5G07230//LTP12//AGL7//AGL5//PARP1//AGL9 GO:0009767 photosynthetic electron transport chain BP 0.0719000365023328 ATFD2//NDF1//CRR23//OE23 GO:0009962 regulation of flavonoid biosynthetic pro... BP 0.0719000365023328 AGL8//AT5G46780//AT3G10260//AT1G28680 GO:0007389 pattern specification process BP 0.0728139541681675 AT5G13140//AGL2//ATMYB23//AGL7//AGL5//PARP1//AGL9//IAA20 GO:0007166 cell surface receptor signaling pathway BP 0.0737020851796491 AT2G45340//MEE62//AT5G37450//GSO1//ATCLV1 GO:0003002 regionalization BP 0.0765428624018665 AGL2//ATMYB23//AGL7//AGL5//AGL9//IAA20 GO:1901700 response to oxygen-containing compound BP 0.0766439836074165 RAP2.11//AT5G50915//AGD9//RS5//GAD//OHP//ATFER3//LPPepsilon1//ATFSD1//AtGRF8//IQD22//ENDO5//CRK28//DFL2//AFP3//ATGLR3.3//LHCB2//ATICE1//RGLG1//CDI3//CAT1//WAK2//ATFD2//ABCB26//AT1G17610//AT1G64610//AT1G64150//OE23//ESP//ABH1//ATFER4//atnudt5//PARP1//ATGSTU17//ATEDR1//CYP94C1//ANN3//GIK//AT2G30810 GO:0010359 regulation of anion channel activity BP 0.0772111228290667 GAD//GIK GO:0022898 regulation of transmembrane transporter ... BP 0.0772111228290667 GAD//GIK GO:0032409 regulation of transporter activity BP 0.0772111228290667 GAD//GIK GO:0032412 regulation of ion transmembrane transpor... BP 0.0772111228290667 GAD//GIK GO:0034762 regulation of transmembrane transport BP 0.0772111228290667 GAD//GIK GO:0034765 regulation of ion transmembrane transpor... BP 0.0772111228290667 GAD//GIK GO:0046916 cellular transition metal ion homeostasi... BP 0.0772111228290667 ATFER3//ATFER4 GO:1903959 regulation of anion transmembrane transp... BP 0.0772111228290667 GAD//GIK GO:0015672 monovalent inorganic cation transport BP 0.0787931295270268 PDE226//KAT1//OHP//KAT2//LHCB2//ATFD2//VHA-E3//OE23 GO:0010218 response to far red light BP 0.0789391005485788 OHP//LHCB2//ATFD2//OE23 GO:0009790 embryo development BP 0.0807341675964504 MEE62//EMB1241//GSO1//MEE51//emb2738//ATICE1//WAK2//emb1507//ABH1//ATFER4//emb2411//ATECP63//CDC27b//IAA20//GPPS GO:0019684 photosynthesis, light reaction BP 0.0863590851649731 LHCB3//OHP//AT3G61870//PSAD-1//LHCB2//ATFD2//NDF1//CRR23//OE23//OTP51 GO:0008299 isoprenoid biosynthetic process BP 0.0880932933602001 PDE226//NDP1//AT3G61870//AT3G54210//CLB6//AtGRF8//CH-42//PDE181//NDF1//ATSULA//AT2G21385//GPPS//CYP710A2 GO:0006732 coenzyme metabolic process BP 0.0882395762332385 At-NEET//AT3G61870//AT3G53580//AT4G20930//ATNSI//AT1G12230//NDF1//7RED//CRR23//ATSULA//GPPS GO:0010035 response to inorganic substance BP 0.0891088860130881 RAP2.11//AT5G26220//RS5//GAD//AT5G10540//ATFER3//LPPepsilon1//AT3G46170//ATFSD1//ENDO5//HEME1//ALMT9//LHCB2//RGLG1//CDI3//CAT1//ABCB26//AT1G64610//AT1G64150//ATFER4//ATGSTU17//ATEDR1//CYP94C1//ANN3 GO:0008544 epidermis development BP 0.0927549689170602 ATMYB23//GSO1