GOID TERM ONTOLOGY pValue Genes GO:0007033 vacuole organization BP 0.000708790623582603 ATGP1//ATATG6//AT3G42050//ATB//PMP GO:0010224 response to UV-B BP 0.00121872614040109 ELIP2//UGT78D2//UBQ3//A11//F3'H//AT3G17800//HYH//AT1G06000 GO:0006575 cellular modified amino acid metabolic p... BP 0.00122212405149944 AT5G66060//ATMDAR2//A11//ATGR2//ATPAL2//DAG2//ADCS GO:0080167 response to karrikin BP 0.00135870979193761 UGT78D2//A11//ATPAL2//ATGPX7//HYH//AT3G02910//FDH GO:0046148 pigment biosynthetic process BP 0.00213077413905321 ELIP2//UGT78D2//COX15//PSY//CSP41A//APG3//A11//F3'H//AT4G39040//B1//CH-42//AT1G06000//AT1G49380 GO:0009804 coumarin metabolic process BP 0.00226923410596989 EMB1144//AT5G24760//ATMDAR2//ATPAL2//KCS1 GO:0009805 coumarin biosynthetic process BP 0.00226923410596989 EMB1144//AT5G24760//ATMDAR2//ATPAL2//KCS1 GO:0006623 protein targeting to vacuole BP 0.00494414592624138 ATGP1//UBQ3//ATATG6//ATCHX20//AT3G42050//PMP GO:0072665 protein localization to vacuole BP 0.00494414592624138 ATGP1//UBQ3//ATATG6//ATCHX20//AT3G42050//PMP GO:0072666 establishment of protein localization to... BP 0.00494414592624138 ATGP1//UBQ3//ATATG6//ATCHX20//AT3G42050//PMP GO:0042398 cellular modified amino acid biosyntheti... BP 0.00548513293698072 ATMDAR2//A11//ATPAL2//DAG2//ADCS GO:0009718 anthocyanin-containing compound biosynth... BP 0.00764570946746614 UGT78D2//A11//F3'H//AT1G06000 GO:0009699 phenylpropanoid biosynthetic process BP 0.00803909391875817 EMB1144//AT5G24760//AT1G58170//ATCESA3//ATMDAR2//ATPAL2//KCS1 GO:0007034 vacuolar transport BP 0.00827591594632864 ATGP1//UBQ3//ATATG6//ATCHX20//AT3G42050//PMP GO:0006518 peptide metabolic process BP 0.00890761628508457 ATGR2//AT3G15710//ATPCS2 GO:0009411 response to UV BP 0.00976192279406959 ELIP2//UGT78D2//ATCESA3//AtNCS1//UBQ3//A11//F3'H//AT3G17800//HYH//AT1G06000 GO:0006633 fatty acid biosynthetic process BP 0.0123452775843076 PSY//B1//CH-42//AT4G04320//LACS3//KCS1//ADAP//FDH GO:0043090 amino acid import BP 0.0125023696710097 ATPLT5//AT1G05350//AT2G34250//ATUBA1 GO:0019637 organophosphate metabolic process BP 0.0132884535544048 AT2G39795//HINT4//FTSH5//PYRD//PSY//CSP41A//AT3G52070//AT4G39040//LTO1//AT4G31210//AT4G25280//AK-HSDH//CH-42//AT4G12600//ATNDI1//AtLpxK//AT3G10530//AT1G69070//AT1G60890//AOAT2//AT1G44920//AT1G49380//FTSH1//FUG1//EMA1//AT1G22850//AHA1//AT2G34250//ATAMPD GO:0042440 pigment metabolic process BP 0.0135069266886904 ELIP2//UGT78D2//COX15//PSY//CSP41A//APG3//A11//F3'H//AT4G39040//B1//CH-42//AT1G06000//AT1G49380 GO:0009813 flavonoid biosynthetic process BP 0.0144583297765835 ELIP2//UGT78D2//AtNCS1//A11//ATPAL2//F3'H//AT1G25460//AT1G06000 GO:0072594 establishment of protein localization to... BP 0.0151961496137641 ABA3//ATGP1//cpHsc70-2//ATPHB3//DEG9//PYRD//ATRH25//UBQ3//ATATG6//ATGR2//ATCHX20//AT3G42050//PMP//AT3G07860//AT1G13160//EMA1//ATTRN1 GO:0016482 cytoplasmic transport BP 0.015288033369184 ABA3//ATGP1//cpHsc70-2//ATPHB3//DEG9//PYRD//ATRH25//UBQ3//ATATG6//ATGR2//ATCHX20//AT3G42050//PMP//AT3G07860//AT1G13160//EMA1//AT1G05350//ATTRN1//AT2G34250//ATUBA1 GO:0044711 single-organism biosynthetic process BP 0.0158762540077191 AT2G39795//AT5G12350//ELIP2//ATE2FB//EMB1144//EMB3136//AT5G24760//ATCYP20-2//ABA3//AT1G58170//UGT78D2//AT5G67630//COX15//FTSH5//PYRD//PSY//ATCESA3//ATMDAR2//AtNCS1//DPA//CSP41A//APG3//A11//AT3G53170//ATPAL2//AT3G52070//F3'H//AT4G39040//LTO1//DHS2//AT4G31210//VTC2//B1//ATCSLG1//AK-HSDH//CH-42//AT4G12600//AT4G04320//AT1G29880//ATNDI1//AtLpxK//AT3G18500//ATTOP6B//AT3G19400//AT3G10530//GAUT13//AT1G69070//LACS3//AOAT2//AT1G06000//AT1G44920//KCS1//AtPPa1//ADAP//AT1G49380//FUG1//EMA1//AT1G22850//ATPCS2//AT2G35733//ADCS//AHA1//ATAMPD//AT2G31040//FDH GO:0009698 phenylpropanoid metabolic process BP 0.0160060234203864 EMB1144//AT5G24760//AT1G58170//ATCESA3//ATMDAR2//ATPAL2//KCS1//DAG2 GO:0033365 protein localization to organelle BP 0.0174174396442194 ABA3//ATGP1//cpHsc70-2//ATPHB3//DEG9//PYRD//ATRH25//UBQ3//ATATG6//ATGR2//ATCHX20//AT3G42050//PMP//AT3G07860//AT1G13160//EMA1//ATTRN1 GO:1901564 organonitrogen compound metabolic proces... BP 0.0180670274868242 AT2G39795//ELIP2//HINT4//CIPK4//EMB1144//ATCYP20-2//AT5G66060//COX15//FTSH5//PYRD//PSY//ATMDAR2//AtNCS1//CSP41A//APG3//ATGR2//AT3G53170//ATPAL2//AT4G39040//LTO1//DHS2//AT4G31210//AK-HSDH//CH-42//AT4G12600//AT1G29880//AT3G19400//AT3G15710//AT3G10530//AOAT2//AtPPa1//FTSH1//ATPCS2//DAG2//ADCS//AHA1//AT2G34250//ATAMPD GO:0044550 secondary metabolite biosynthetic proces... BP 0.019763338498647 EMB1144//AT5G24760//AT1G58170//FTSH5//ATCESA3//ATMDAR2//ATPAL2//LTO1//CH-42//KCS1//ATPCS2 GO:0006598 polyamine catabolic process BP 0.0228602178378824 ATMDAR2//ATPAL2//DAG2 GO:0009812 flavonoid metabolic process BP 0.024474512175224 ELIP2//UGT78D2//AtNCS1//A11//ATPAL2//F3'H//AT1G25460//AT1G06000 GO:0046283 anthocyanin-containing compound metaboli... BP 0.024990510833188 UGT78D2//A11//F3'H//AT1G06000 GO:0009416 response to light stimulus BP 0.0286246292066645 AT2G39795//ELIP2//UGT78D2//cpHsc70-2//FTSH5//KYP//ATCESA3//AtNCS1//UBQ3//CSP41A//A11//F3'H//FRS9//AT4G26980//AT4G19530//ATHSP22.0//ATNDI1//ACR11//AT3G17800//HYH//AT1G06000//KCS1//DAG2//AT2G29500//SRO1//ATAMPD//FDH GO:0090407 organophosphate biosynthetic process BP 0.0303331264912576 AT2G39795//PYRD//PSY//AT3G52070//AT4G39040//LTO1//AT4G31210//AK-HSDH//CH-42//AT4G12600//ATNDI1//AtLpxK//AT3G10530//AT1G69070//AOAT2//AT1G44920//AT1G49380//FUG1//EMA1//AT1G22850//AHA1//ATAMPD GO:0016109 tetraterpenoid biosynthetic process BP 0.0305849513521842 PSY//APG3//AT4G39040//B1//CH-42//AT1G49380 GO:0016117 carotenoid biosynthetic process BP 0.0305849513521842 PSY//APG3//AT4G39040//B1//CH-42//AT1G49380 GO:0006163 purine nucleotide metabolic process BP 0.0322459901620532 HINT4//PYRD//AK-HSDH//AT4G12600//AHA1//ATAMPD GO:0016108 tetraterpenoid metabolic process BP 0.0322459901620532 PSY//APG3//AT4G39040//B1//CH-42//AT1G49380 GO:0016116 carotenoid metabolic process BP 0.0322459901620532 PSY//APG3//AT4G39040//B1//CH-42//AT1G49380 GO:0006721 terpenoid metabolic process BP 0.0323473208744698 ABA3//COX15//PSY//APG3//AT4G39040//B1//ATGA2OX8//CH-42//AT1G49380//AT2G35733 GO:0006979 response to oxidative stress BP 0.0323891243002411 ABA3//LON1//cpHsc70-2//ATPHB3//FSD3//SVR3//ATPA2//ATPAL2//ATGPX7//AT4G26980//ATHSP22.0//AT2G29500//SRO1 GO:0015988 energy coupled proton transmembrane tran... BP 0.0334366023217168 AT3G42050//AHA1 GO:0015991 ATP hydrolysis coupled proton transport BP 0.0334366023217168 AT3G42050//AHA1 GO:0046112 nucleobase biosynthetic process BP 0.0334366023217168 PYRD//AtNCS1 GO:0006164 purine nucleotide biosynthetic process BP 0.0357443440236798 PYRD//AK-HSDH//AT4G12600//AHA1//ATAMPD GO:0010304 PSII associated light-harvesting complex... BP 0.0362723777435797 FTSH5//FTSH1//FTSH8 GO:0015849 organic acid transport BP 0.0400729810810664 EMB1144//AT5G19500//ALMT6//ATPLT5//ANT1//AT1G05350//AT2G34250//ATUBA1 GO:0046942 carboxylic acid transport BP 0.0400729810810664 EMB1144//AT5G19500//ALMT6//ATPLT5//ANT1//AT1G05350//AT2G34250//ATUBA1 GO:0009112 nucleobase metabolic process BP 0.0400835366055234 PYRD//AtNCS1 GO:1901566 organonitrogen compound biosynthetic pro... BP 0.0432349339099025 AT2G39795//ELIP2//EMB1144//ATCYP20-2//COX15//PYRD//PSY//AtNCS1//CSP41A//APG3//AT3G53170//AT4G39040//DHS2//AT4G31210//AK-HSDH//CH-42//AT4G12600//AT3G19400//AT3G10530//AOAT2//AtPPa1//ATPCS2//ADCS//AHA1//ATAMPD GO:0016114 terpenoid biosynthetic process BP 0.0444441551346603 ABA3//COX15//PSY//APG3//AT4G39040//B1//CH-42//AT1G49380//AT2G35733 GO:0019438 aromatic compound biosynthetic process BP 0.0447780902598568 AT2G39795//ELIP2//AT1G56610//ATE2FB//EMB1144//EMB3136//AT5G24760//AT1G58170//COX15//NRPB6A//PYRD//PSY//KYP//ATCESA3//ATMDAR2//AtNCS1//DPA//CSP41A//APG3//ATPAL2//ATBZIP24//AT4G39040//AT4G36210//DHS2//AT4G31210//MRL7//AT4G25280//AK-HSDH//CH-42//AT4G12600//UNE10//At-SCL30A//AT3G52270//REM39//HUA1//ATTOP6B//AT3G13940//HYH//AT3G02790//AT3G10530//AtMYB3R3//AT1G69070//AT3G16280//CMT3//ATMYB13//KCS1//ADAP//FUG1//EMA1//ANAC009//DAG2//ATOFP16//AT2G17930//ADCS//SPL1//AHA1//AT2G38300//ATAMPD GO:0072522 purine-containing compound biosynthetic ... BP 0.0500385525815519 PYRD//AK-HSDH//AT4G12600//AHA1//ATAMPD GO:0009628 response to abiotic stimulus BP 0.0513352385339018 AT2G39795//AT5G12350//VRN2//ELIP2//ABA3//UGT78D2//LON1//cpHsc70-2//FTSH5//ATPHB3//KYP//ATRH25//ATCESA3//ATMDAR2//AtNCS1//UBQ3//CSP41A//A11//ATPAL2//ATBZIP24//F3'H//AT3G42050//FRS9//ATGPX7//VTC2//AT4G26980//AT4G19530//ATHSP22.0//ATNDI1//ACR11//REM39//PMP//AT3G17800//HYH//AT3G02910//AT3G01570//ARG1//ATMYB13//AT1G06000//KCS1//ADAP//ATGSTU26//DAG2//AT2G29500//SRO1//AHA1//ATGGT-IB//AT2G34250//ATAMPD//FDH" GO:0018130 heterocycle biosynthetic process BP 0.0524784647066568 AT2G39795//ELIP2//AT1G56610//ATE2FB//EMB1144//EMB3136//AT5G24760//COX15//NRPB6A//PYRD//PSY//KYP//ATMDAR2//AtNCS1//DPA//CSP41A//APG3//ATPAL2//ATBZIP24//AT4G39040//AT4G36210//AT4G31210//MRL7//AT4G25280//AK-HSDH//CH-42//AT4G12600//UNE10//At-SCL30A//AT3G52270//REM39//HUA1//ATTOP6B//AT3G13940//HYH//AT3G02790//AT3G10530//AtMYB3R3//AT1G69070//AT3G16280//CMT3//ATMYB13//KCS1//ADAP//FUG1//EMA1//ANAC009//DAG2//ATOFP16//AT2G17930//ADCS//SPL1//AHA1//AT2G38300//ATAMPD GO:0008356 asymmetric cell division BP 0.0546953491776759 CMT3//ANAC009 GO:0009845 seed germination BP 0.0557736263057047 ELIP2//ATATG6//AT3G01570//ADAP//DAG2//CIPK3//ATAMPD GO:0044281 small molecule metabolic process BP 0.0557949208236588 AT2G39795//HINT4//EMB1144//ATCYP20-2//ATMES9//ABA3//AT5G66060//PFK4//COX15//FTSH5//PYRD//PSY//ATCESA3//AtNCS1//CSP41A//AT3G53170//ATPAL2//AT4G39040//LTO1//DHS2//AT4G31210//AT4G30620//VTC2//B1//AT4G25280//ATGA2OX8//AK-HSDH//CH-42//AT4G12600//AT4G04320//AT1G29880//ATNDI1//AtLpxK//AT3G19400//AT3G10530//AT1G69070//LACS3//AOAT2//AT1G44920//KCS1//AtPPa1//ADAP//AT1G49380//FTSH1//FUG1//EMA1//AT1G22850//AT2G35733//ADCS//ENOC//AHA1//AT2G34250//ATAMPD//ATUBA1//FDH GO:0006865 amino acid transport BP 0.0578993874674252 EMB1144//AT5G19500//ATPLT5//ANT1//AT1G05350//AT2G34250//ATUBA1 GO:0019748 secondary metabolic process BP 0.0586887980968058 EMB1144//AT5G24760//AT1G58170//FTSH5//ATCESA3//ATMDAR2//ATGR2//ATPAL2//LTO1//ATGPX7//CH-42//KCS1//ATGSTU26//ATPCS2//DAG2//ATUBA1 GO:0072521 purine-containing compound metabolic pro... BP 0.0592540898485252 HINT4//PYRD//AK-HSDH//AT4G12600//AHA1//ATAMPD GO:0043603 cellular amide metabolic process BP 0.0594336213370139 ATGR2//AT3G15710//ATPCS2//ADCS GO:0016053 organic acid biosynthetic process BP 0.0600668594944009 EMB1144//ATCYP20-2//ABA3//PSY//AT3G53170//AT4G39040//DHS2//VTC2//B1//AK-HSDH//CH-42//AT4G04320//AT3G19400//LACS3//AOAT2//KCS1//AtPPa1//ADAP//AT2G35733//ADCS//FDH GO:0046394 carboxylic acid biosynthetic process BP 0.0600668594944009 EMB1144//ATCYP20-2//ABA3//PSY//AT3G53170//AT4G39040//DHS2//VTC2//B1//AK-HSDH//CH-42//AT4G04320//AT3G19400//LACS3//AOAT2//KCS1//AtPPa1//ADAP//AT2G35733//ADCS//FDH GO:0016072 rRNA metabolic process BP 0.0610223411573943 RNS2//EMB3136//CSP41A//AT3G53890//CH-42//AT4G12600//AT3G13230//EDA27//AT2G40360 GO:0017004 cytochrome complex assembly BP 0.062597371077469 CcdA//AT1G49380 GO:0009314 response to radiation BP 0.0636100915576671 AT2G39795//ELIP2//UGT78D2//cpHsc70-2//FTSH5//KYP//ATCESA3//AtNCS1//UBQ3//CSP41A//A11//F3'H//FRS9//AT4G26980//AT4G19530//ATHSP22.0//ATNDI1//ACR11//AT3G17800//HYH//AT1G06000//KCS1//DAG2//AT2G29500//SRO1//ATAMPD//FDH GO:0022613 ribonucleoprotein complex biogenesis BP 0.0647857198317484 EMB3136//AT5G06360//CSP41A//AT3G53890//CH-42//AT4G12600//AT1G34030//AT3G13230//EDA27//EMA1//AT2G40360 GO:0090351 seedling development BP 0.0668992076893421 ELIP2//ATATG6//AT3G01570//ADAP//DAG2//CIPK3//ATAMPD GO:0010256 endomembrane system organization BP 0.0696480922916259 ATGP1//ATCESA3//AT3G42050//BTI1//ATB//PMP GO:0006081 cellular aldehyde metabolic process BP 0.0716036974664064 FTSH5//PSY//CSP41A//AT4G39040//LTO1//AT4G30620//CH-42//AtLpxK//AT1G44920//AT1G49380//FTSH1//FUG1//AT2G34250 GO:0006595 polyamine metabolic process BP 0.072561208470458 ATMDAR2//ATPAL2//DAG2 GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 0.0733641465890113 FTSH5//PSY//CSP41A//AT4G39040//LTO1//CH-42//AT1G44920//AT1G49380//FTSH1//FUG1//AT2G34250 GO:0000302 response to reactive oxygen species BP 0.0739934580809627 ABA3//cpHsc70-2//ATPHB3//FSD3//SVR3//AT4G26980//ATHSP22.0//AT2G29500 GO:0015711 organic anion transport BP 0.0739934580809627 EMB1144//AT5G19500//ALMT6//ATPLT5//ANT1//AT1G05350//AT2G34250//ATUBA1 GO:0009624 response to nematode BP 0.0779185064311956 ABCF5//ATPA2//ANT1 GO:0019752 carboxylic acid metabolic process BP 0.081632214835297 EMB1144//ATCYP20-2//ATMES9//ABA3//AT5G66060//PFK4//PSY//ATCESA3//AT3G53170//ATPAL2//AT4G39040//LTO1//DHS2//AT4G30620//VTC2//B1//ATGA2OX8//AK-HSDH//CH-42//AT4G04320//AT1G29880//AtLpxK//AT3G19400//LACS3//AOAT2//AT1G44920//KCS1//AtPPa1//ADAP//AT1G49380//FUG1//AT2G35733//ADCS//ENOC//ATUBA1//FDH GO:1902582 single-organism intracellular transport BP 0.0817048504566101 ABA3//ATGP1//cpHsc70-2//ATMYA2//ATPHB3//DEG9//PYRD//PIN5//ATRH25//UBQ3//ATATG6//ATGR2//ATCHX20//AT3G42050//ATGB3//PMP//AT3G07860//AT1G13160//EMA1//AT1G05350//VPS35A//ATTRN1//AT2G34250//ATUBA1 GO:0072330 monocarboxylic acid biosynthetic process BP 0.082268874705521 ABA3//PSY//B1//CH-42//AT4G04320//LACS3//AOAT2//KCS1//ADAP//AT2G35733//ADCS//FDH GO:0010109 regulation of photosynthesis BP 0.0883409450245145 FTSH5//ACHT1 GO:0016197 endosomal transport BP 0.0883409450245145 ATGB3//VPS35A GO:0009451 RNA modification BP 0.0885336612458616 EMB3136//MEF1//ATPHB3//AT3G53170//AT4G19530//DEG5//AT4G12600//AT2G30320//AT1G34030//AT1G49380//EDA27 GO:0055086 nucleobase-containing small molecule met... BP 0.0885924111897966 AT2G39795//HINT4//FTSH5//PYRD//AtNCS1//CSP41A//LTO1//AT4G31210//AT4G25280//AK-HSDH//AT4G12600//AT3G10530//AT1G69070//FTSH1//EMA1//AHA1//AT2G34250//ATAMPD GO:0034660 ncRNA metabolic process BP 0.0897065603182238 RNS2//EMB3136//CSP41A//APG3//AT3G53890//CH-42//AT4G12600//AT1G29880//AT3G13230//FUG1//EDA27//AT2G40360 GO:0006606 protein import into nucleus BP 0.0902110318366227 DEG9//PYRD//ATRH25//AT1G13160//EMA1//ATTRN1 GO:0006779 porphyrin-containing compound biosynthet... BP 0.0902110318366227 ELIP2//COX15//PSY//CSP41A//APG3//CH-42 GO:0044744 protein targeting to nucleus BP 0.0902110318366227 DEG9//PYRD//ATRH25//AT1G13160//EMA1//ATTRN1 GO:0051170 nuclear import BP 0.0902110318366227 DEG9//PYRD//ATRH25//AT1G13160//EMA1//ATTRN1 GO:1902593 single-organism nuclear import BP 0.0902110318366227 DEG9//PYRD//ATRH25//AT1G13160//EMA1//ATTRN1 GO:0034504 protein localization to nucleus BP 0.0933919714150865 DEG9//PYRD//ATRH25//AT1G13160//EMA1//ATTRN1 GO:0006655 phosphatidylglycerol biosynthetic proces... BP 0.0949780816964176 PSY//CH-42//AT1G49380 GO:0009073 aromatic amino acid family biosynthetic ... BP 0.0960705737891615 EMB1144//AT4G39040//DHS2//ADCS GO:0033014 tetrapyrrole biosynthetic process BP 0.0966327909739356 ELIP2//COX15//PSY//CSP41A//APG3//CH-42 GO:0051301 cell division BP 0.0974593842534227 ATE2FB//ATPHB3//KYP//ATCESA3//DPA//CMT3//ANAC009//AT2G17930//ATNPSN11//ATAMPD GO:0002213 defense response to insect BP 0.0975127827691797 UPI//LACS3 GO:0006783 heme biosynthetic process BP 0.0975127827691797 COX15//APG3 GO:1902600 hydrogen ion transmembrane transport BP 0.0975127827691797 AT3G42050//AHA1 GO:0009117 nucleotide metabolic process BP 0.0976250668753525 AT2G39795//HINT4//FTSH5//PYRD//CSP41A//LTO1//AT4G31210//AT4G25280//AK-HSDH//AT4G12600//AT3G10530//AT1G69070//FTSH1//EMA1//AHA1//AT2G34250//ATAMPD GO:0016556 mRNA modification BP 0.0984642438253383 EMB3136//AT3G53170//AT4G19530//DEG5//AT1G49380 GO:0006753 nucleoside phosphate metabolic process BP 0.100884370877482 AT2G39795//HINT4//FTSH5//PYRD//CSP41A//LTO1//AT4G31210//AT4G25280//AK-HSDH//AT4G12600//AT3G10530//AT1G69070//FTSH1//EMA1//AHA1//AT2G34250//ATAMPD GO:0046471 phosphatidylglycerol metabolic process BP 0.100977016341837 PSY//CH-42//AT1G49380