GOID TERM ONTOLOGY pValue Genes GO:0007264 small GTPase mediated signal transductio... BP 0.00158648698383027 AtRABH1a//ARFA1E//ARLA1B//ATMIN7//ATGB2//AtRABA1g//ATFP8//ATRAB-C1 GO:0006778 porphyrin-containing compound metabolic ... BP 0.00567091417841156 ATDUF3//AT1G16840//ATSKL1//HEMB1//HEMA2//AT2G20920//ATHO1 GO:0033013 tetrapyrrole metabolic process BP 0.00567091417841156 ATDUF3//AT1G16840//ATSKL1//HEMB1//HEMA2//AT2G20920//ATHO1 GO:0033014 tetrapyrrole biosynthetic process BP 0.00592112463285313 ATDUF3//ATSKL1//HEMB1//HEMA2//ATHO1 GO:0006914 autophagy BP 0.0082214785236048 AT5G57910//BAM4//ATG8G//APG8H//ATG8H//ATG8C GO:0051607 defense response to virus BP 0.013841503213306 ATIPK1//SUA//ARLA1B//MCCB//ATRTL2//AT1G24240 GO:1901565 organonitrogen compound catabolic proces... BP 0.0252322136937849 MCCB//AT4G33420//ATVAMP711//MSRA4//AT1G16840//ATSKL1//PIA1//AT2G20920//ATHO1 GO:0031122 cytoplasmic microtubule organization BP 0.0262619331505469 PHS1//PFD6 GO:0043622 cortical microtubule organization BP 0.0262619331505469 PHS1//PFD6 GO:0006779 porphyrin-containing compound biosynthet... BP 0.0266481228793173 ATDUF3//ATSKL1//HEMB1//HEMA2 GO:0009646 response to absence of light BP 0.0288565951882478 AT4G34150//DIN4//BCE2 GO:0031669 cellular response to nutrient levels BP 0.028901345098157 AKINBETA1//AtZIP12//AT5G57910//ARLA1B//DIN4//UBC32//BCE2//ALPHA-DOX1//AT3G01260//AtPPsPase1 GO:0051188 cofactor biosynthetic process BP 0.0311521070569938 ATDUF3//AT3G53580//ATSKL1//HEMB1//HPD//HEMA2//ATHO1 GO:0016192 vesicle-mediated transport BP 0.0319731666456779 ACX4//AT3G51890//ATPEP12//AtRABH1a//NOI//AT5G10960//ATBET11//ATSYP72//ATMIN7//ATGB2//ATVAMP711//AtVPS15//AT1G16840//AtRABA1g//ATFP8//VIP5//ATVAMP726//AT1G21780//PRA1.G1 GO:0006301 postreplication repair BP 0.0350147663257978 UBC32//ATREV3//ATG8C GO:0006833 water transport BP 0.0367679985325338 ATCYS-3A//AtZIP12//RD19//ATNLM2//ATSR2 GO:0042044 fluid transport BP 0.0367679985325338 ATCYS-3A//AtZIP12//RD19//ATNLM2//ATSR2 GO:0009615 response to virus BP 0.0367867394759829 ATIPK1//SUA//ARLA1B//MCCB//ATRTL2//AT1G24240 GO:0042440 pigment metabolic process BP 0.0408356167594354 AT1G16840//ATSKL1//HEMB1//HPD//HEMA2//AT2G20920//ATHO1 GO:0031668 cellular response to extracellular stimu... BP 0.042203563587866 AKINBETA1//AtZIP12//AT5G57910//ARLA1B//DIN4//UBC32//BCE2//ALPHA-DOX1//AT3G01260//AtPPsPase1 GO:0071496 cellular response to external stimulus BP 0.042203563587866 AKINBETA1//AtZIP12//AT5G57910//ARLA1B//DIN4//UBC32//BCE2//ALPHA-DOX1//AT3G01260//AtPPsPase1 GO:0030865 cortical cytoskeleton organization BP 0.043259706512273 PHS1//PFD6 GO:0031667 response to nutrient levels BP 0.0433750444597623 AKINBETA1//AtZIP12//AT5G57910//ARLA1B//DIN4//UBC32//BCE2//ALPHA-DOX1//AT3G01260//AtPPsPase1 GO:0044282 small molecule catabolic process BP 0.0435891996521536 ACX4//AT1G77370//GRXC1//AT5G59140//ATG8G//CSY2//MCCB//AtVPS15//MSRA4//UBC32//ATSKL1//ALPHA-DOX1//ETHE1//AT1G21780//PIA1 GO:0042180 cellular ketone metabolic process BP 0.0436003107703053 AT1G77370//GRXC1//CSY2//AT3G53580//ETHE1//HPD GO:0006090 pyruvate metabolic process BP 0.0461749786304557 ATCYS-3A//ATDEF2//AtFBA4//ATMDAR1//RD19//AT4G26390//ATSKL1//AT3G04050//PFD6 GO:0006081 cellular aldehyde metabolic process BP 0.0471786426134544 AT1G77370//GRXC1//ATDEF2//AtFBA4//CSY2//ATSKL1//HEMB1//ETHE1 GO:0006284 base-excision repair BP 0.0496236386563918 AT5G57970//ERCC1 GO:0006563 L-serine metabolic process BP 0.0496236386563918 ATCYS-3A//ATSR GO:0019319 hexose biosynthetic process BP 0.0511562625759519 ATCYS-3A//ATMDAR1//AT4G26390//AT3G04050//PFD6//ATUGE1 GO:0006787 porphyrin-containing compound catabolic ... BP 0.053098085656561 AT1G16840//AT2G20920//ATHO1 GO:0033015 tetrapyrrole catabolic process BP 0.053098085656561 AT1G16840//AT2G20920//ATHO1 GO:0051187 cofactor catabolic process BP 0.053098085656561 AT1G16840//AT2G20920//ATHO1 GO:0009267 cellular response to starvation BP 0.053183073385771 AtZIP12//AT5G57910//ARLA1B//DIN4//UBC32//BCE2//ALPHA-DOX1//AT3G01260//AtPPsPase1 GO:1901575 organic substance catabolic process BP 0.0532427033975318 ATCYS-3A//ACX4//AT1G77370//GRXC1//AT5G59140//BAM4//AtFBA4//ATG8G//CSY2//SUA//ATMDAR1//RD19//AT4G38930//MCCB//AT4G33420//ATVAMP711//AtVPS15//AT4G26390//MSRA4//AT4G05460//UBQ14//AT1G16840//LSF2//UBC32//ATSKL1//AT3G04050//ALPHA-DOX1//ERCC1//PFD6//ETHE1//AT1G21780//PIA1//AT2G20920//ATHO1 GO:0009750 response to fructose BP 0.054018983283035 AKINBETA1//DIN4//ATSR2//BCE2//AT1G72730 GO:0006096 glycolytic process BP 0.0540821681487862 ATCYS-3A//AtFBA4//ATMDAR1//RD19//AT4G26390//AT3G04050//PFD6 GO:0009056 catabolic process BP 0.0542242698346192 ATCYS-3A//AT4G16190//ACX4//AT1G77370//GRXC1//AT5G59140//AT5G57910//BAM4//AtFBA4//ATG8G//CSY2//SUA//ATMDAR1//RD19//AT4G38930//MCCB//AT4G33420//ATVAMP711//AtVPS15//AT4G26390//MSRA4//AT4G05460//UBQ14//AT1G16840//LSF2//APG8H//UBC32//ATSKL1//AT3G04050//ATG8H//ALPHA-DOX1//ERCC1//PFD6//AT2G43590//ETHE1//AT1G21780//PIA1//ATG8C//AT2G20920//ATHO1 GO:0016054 organic acid catabolic process BP 0.055971183002521 ACX4//AT5G59140//ATG8G//CSY2//MCCB//AtVPS15//MSRA4//UBC32//ATSKL1//ALPHA-DOX1//AT1G21780//PIA1 GO:0046395 carboxylic acid catabolic process BP 0.055971183002521 ACX4//AT5G59140//ATG8G//CSY2//MCCB//AtVPS15//MSRA4//UBC32//ATSKL1//ALPHA-DOX1//AT1G21780//PIA1 GO:0000272 polysaccharide catabolic process BP 0.0563004043170109 BAM4//LSF2 GO:0006826 iron ion transport BP 0.0564554127560609 AtZIP12//ARLA1B//ALPHA-DOX1//AT3G01260//PDE318 GO:0019243 methylglyoxal catabolic process to D-lac... BP 0.0599252833116916 AT1G77370//GRXC1//CSY2//ETHE1 GO:0046148 pigment biosynthetic process BP 0.0615153555737231 ATSKL1//HEMB1//HPD//HEMA2//ATHO1 GO:0009991 response to extracellular stimulus BP 0.0621431448705744 AKINBETA1//AtZIP12//AT5G57910//ARLA1B//DIN4//UBC32//BCE2//ALPHA-DOX1//AT3G01260//AtPPsPase1 GO:0009438 methylglyoxal metabolic process BP 0.0631101801118712 AT1G77370//GRXC1//CSY2//ETHE1 GO:0042182 ketone catabolic process BP 0.0631101801118712 AT1G77370//GRXC1//CSY2//ETHE1 GO:0051596 methylglyoxal catabolic process BP 0.0631101801118712 AT1G77370//GRXC1//CSY2//ETHE1 GO:0016109 tetraterpenoid biosynthetic process BP 0.0632696266613863 HPD//ATHO1 GO:0016117 carotenoid biosynthetic process BP 0.0632696266613863 HPD//ATHO1 GO:0042168 heme metabolic process BP 0.0632696266613863 HEMA2//ATHO1 GO:0009838 abscission BP 0.065709141921009 ALPHA-DOX1//AT1G64405//AT1G21780 GO:0042594 response to starvation BP 0.065779049447288 AtZIP12//AT5G57910//ARLA1B//DIN4//UBC32//BCE2//ALPHA-DOX1//AT3G01260//AtPPsPase1 GO:0055114 oxidation-reduction process BP 0.0661753325740486 sks15//ACX4//AOX2//AT5G59930//AT5G37620//AT3G59130//CSY2//ATMDAR1//CYP81F1//AT4G33420//AtVPS15//MSRA4//AT4G10260//UBC32//AT3G03080//ALPHA-DOX1//AtErv1//ETHE1//AT1G21780//HPD//AT1G06640//CYP71B28//CYP71B29//AT2G17590//ATSRX//AT1G12010//AT1G09400//HEMA2//AT2G19660//ATHO1 GO:0006089 lactate metabolic process BP 0.0663824451879695 AT1G77370//GRXC1//CSY2//ETHE1 GO:0008380 RNA splicing BP 0.0672581536628253 AT5G59140//ATRPB15.9//At-SCL30//SUA//EMB2769//VIP5//ATPRP40A//GTD1 GO:0046185 aldehyde catabolic process BP 0.069741362579672 AT1G77370//GRXC1//CSY2//ETHE1 GO:0044248 cellular catabolic process BP 0.0703267650898124 AT4G16190//ACX4//AT1G77370//GRXC1//AT5G59140//AT5G57910//BAM4//ATG8G//CSY2//SUA//ATMDAR1//AT4G38930//MCCB//AtVPS15//AT4G26390//MSRA4//AT4G05460//UBQ14//AT1G16840//LSF2//APG8H//UBC32//ATSKL1//AT3G04050//ATG8H//ALPHA-DOX1//ERCC1//AT2G43590//ETHE1//AT1G21780//PIA1//ATG8C//AT2G20920//ATHO1 GO:0006546 glycine catabolic process BP 0.0705117690657133 MSRA4//ATSKL1 GO:0009071 serine family amino acid catabolic proce... BP 0.0705117690657133 MSRA4//ATSKL1 GO:0046364 monosaccharide biosynthetic process BP 0.0709223785917537 ATCYS-3A//ATMDAR1//AT4G26390//AT3G04050//PFD6//ATUGE1 GO:0048193 Golgi vesicle transport BP 0.0729456608117457 ATPEP12//AtRABH1a//NOI//AT5G10960//ATBET11//ATVAMP711//AtVPS15//AT1G16840//ATFP8//VIP5//AT1G21780 GO:0032787 monocarboxylic acid metabolic process BP 0.0760013264566554 ATCYS-3A//ACX4//IAA18//AT1G77370//EPS1//GRXC1//AT5G59140//AT5G54170//ATDEF2//AtFBA4//ATG8G//CSY2//AT3G57460//ATMDAR1//RD19//AtVPS15//AtCLO1//AT4G26390//AT4G10260//UBC32//ATSKL1//AT3G04050//ATG8H//ALPHA-DOX1//PFD6//ETHE1//AT1G21780//PIA1//ATNUDT6 GO:0042181 ketone biosynthetic process BP 0.0780081054771461 AT3G53580//HPD GO:1901661 quinone metabolic process BP 0.0780081054771461 AT3G53580//HPD GO:1901663 quinone biosynthetic process BP 0.0780081054771461 AT3G53580//HPD GO:0070838 divalent metal ion transport BP 0.0781815161405051 ATCYS-3A//AtZIP12//ATVAMP711//ATSR2//PDE318 GO:0035556 intracellular signal transduction BP 0.07923339643785 AT4G17740//AT1G33590//AtRABH1a//AT5G59930//ATMKK3//PHS1//ARFA1E//ARLA1B//ATMIN7//ATGB2//AtVPS15//AtRABA1g//ABF4//AT3G06630//ATFP8//ATRAB-C1//ATNUDT6//AT2G19660 GO:0009310 amine catabolic process BP 0.0803297969295804 AT4G33420//ATVAMP711//ATSKL1//PIA1 GO:0015994 chlorophyll metabolic process BP 0.0803297969295804 AT1G16840//ATSKL1//HEMB1//AT2G20920 GO:0042402 cellular biogenic amine catabolic proces... BP 0.0803297969295804 AT4G33420//ATVAMP711//ATSKL1//PIA1 GO:0051186 cofactor metabolic process BP 0.0818864683858361 ATDUF3//AtFBA4//AT3G53580//AT1G16840//ATSKL1//HEMB1//HPD//HEMA2//AT2G20920//ATHO1 GO:0009746 response to hexose BP 0.0842256267215044 AKINBETA1//DIN4//ATSR2//BCE2//AT1G72730 GO:0072511 divalent inorganic cation transport BP 0.0842256267215044 ATCYS-3A//AtZIP12//ATVAMP711//ATSR2//PDE318 GO:0065004 protein-DNA complex assembly BP 0.0844281096563389 ATTBP3//ERCC1//AT1G08170 GO:0071824 protein-DNA complex subunit organization BP 0.0844281096563389 ATTBP3//ERCC1//AT1G08170 GO:0006598 polyamine catabolic process BP 0.0857406917400036 AT4G33420//ATVAMP711 GO:0016108 tetraterpenoid metabolic process BP 0.0857406917400036 HPD//ATHO1 GO:0016116 carotenoid metabolic process BP 0.0857406917400036 HPD//ATHO1 GO:1901699 cellular response to nitrogen compound BP 0.0873377185191905 SUA//ATRTL2//ALPHA-DOX1//VIP5//AT1G24240 GO:0034284 response to monosaccharide BP 0.0905092421158413 AKINBETA1//DIN4//ATSR2//BCE2//AT1G72730 GO:0000724 double-strand break repair via homologou... BP 0.0945470096861924 ATATM//ERCC1//ATREV3 GO:0000725 recombinational repair BP 0.0945470096861924 ATATM//ERCC1//ATREV3 GO:0010167 response to nitrate BP 0.0973703293724683 NOI//ARLA1B//AT4G33420//ALPHA-DOX1//AT3G01260//CYP71B29 GO:0044712 single-organism catabolic process BP 0.0980090239216603 ATCYS-3A//AT4G16190//ACX4//AT1G77370//GRXC1//AT5G59140//AtFBA4//ATG8G//CSY2//ATMDAR1//RD19//MCCB//AtVPS15//AT4G26390//MSRA4//AT1G16840//UBC32//ATSKL1//AT3G04050//ALPHA-DOX1//PFD6//ETHE1//AT1G21780//PIA1//AT2G20920 GO:0009062 fatty acid catabolic process BP 0.0988017961137686 ACX4//AT5G59140//ATG8G//CSY2//AtVPS15//UBC32//ALPHA-DOX1//AT1G21780 GO:0043436 oxoacid metabolic process BP 0.10019656552058 ATDUF3//ATCYS-3A//ACX4//IAA18//AT1G77370//AT5G27800//EPS1//GRXC1//AT5G59140//AT5G54170//ATDEF2//AtFBA4//ATG8G//CSY2//AT3G57460//AT3G53580//ATMDAR1//RD19//CYP81F1//MCCB//AtVPS15//AtCLO1//AT4G26390//MSRA4//ATSR//AT4G10260//UBC32//ATSKL1//AT3G04050//ATG8H//ALPHA-DOX1//PFD6//ETHE1//AT1G21780//HPD//PIA1//ATNUDT6 GO:0016052 carbohydrate catabolic process BP 0.100511552472736 ATCYS-3A//BAM4//AtFBA4//ATMDAR1//RD19//AT4G26390//LSF2//AT3G04050//PFD6 GO:0006544 glycine metabolic process BP 0.101846581151919 MSRA4//ATSKL1 GO:0006082 organic acid metabolic process BP 0.102045643395675 ATDUF3//ATCYS-3A//ACX4//IAA18//AT1G77370//AT5G27800//EPS1//GRXC1//AT5G59140//AT5G54170//ATDEF2//AtFBA4//ATG8G//CSY2//AT3G57460//AT3G53580//ATMDAR1//RD19//CYP81F1//MCCB//AtVPS15//AtCLO1//AT4G26390//MSRA4//ATSR//AT4G10260//UBC32//ATSKL1//AT3G04050//ATG8H//ALPHA-DOX1//PFD6//ETHE1//AT1G21780//HPD//PIA1//ATNUDT6 GO:0006302 double-strand break repair BP 0.103719179311491 ATATM//XRCC4//ERCC1//ATREV3 GO:0019752 carboxylic acid metabolic process BP 0.104072843809893 ATDUF3//ATCYS-3A//ACX4//IAA18//AT1G77370//AT5G27800//EPS1//GRXC1//AT5G59140//AT5G54170//ATDEF2//AtFBA4//ATG8G//CSY2//AT3G57460//AT3G53580//ATMDAR1//RD19//MCCB//AtVPS15//AtCLO1//AT4G26390//MSRA4//ATSR//AT4G10260//UBC32//ATSKL1//AT3G04050//ATG8H//ALPHA-DOX1//PFD6//ETHE1//AT1G21780//HPD//PIA1//ATNUDT6 GO:0006396 RNA processing BP 0.105025153421635 AT5G59140//ATRPB15.9//CKB3//At-SCL30//SUA//AT3G19630//EMB2769//ATRTL2//AT3G11870//VIP5//ATPRP40A//GTD1//AT1G24240 GO:0072329 monocarboxylic acid catabolic process BP 0.105968714746622 ACX4//AT5G59140//ATG8G//CSY2//AtVPS15//UBC32//ALPHA-DOX1//AT1G21780 GO:0007030 Golgi organization BP 0.110756975969158 ATCYS-3A//ACX4//AT5G10960//RD19//ATVAMP711 GO:0005996 monosaccharide metabolic process BP 0.116409145791347 ATCYS-3A//ATIPK2BETA//ATMDAR1//AT4G26390//AT4G10260//AT3G04050//AT3G01260//PFD6//ATUGE1 GO:0035196 production of miRNAs involved in gene si... BP 0.116456173689291 SUA//ATRTL2//VIP5//AT1G24240 GO:0006094 gluconeogenesis BP 0.117955981281487 ATCYS-3A//ATMDAR1//AT4G26390//AT3G04050//PFD6 GO:0006012 galactose metabolic process BP 0.118700490312778 AT3G01260//ATUGE1 GO:0010227 floral organ abscission BP 0.118700490312778 AT1G64405//AT1G21780