GOID TERM ONTOLOGY pValue Genes GO:0071103 DNA conformation change BP 5.23474034710445e-10 ORTH2//AT5G65360//HTA6//MCM3//H2B//AT5G10390//HTA13//AT3G27360//GYRA//NRP2//AT1G09200//AT2G37470//HIS4 GO:0065004 protein-DNA complex assembly BP 1.17988363002789e-09 ORTH2//AT5G65360//HTA6//H2B//AT5G10390//HTA13//AT3G27360//NRP2//AT1G09200//AT2G37470//HIS4 GO:0071824 protein-DNA complex subunit organization BP 1.17988363002789e-09 ORTH2//AT5G65360//HTA6//H2B//AT5G10390//HTA13//AT3G27360//NRP2//AT1G09200//AT2G37470//HIS4 GO:0031497 chromatin assembly BP 2.8922832049223e-09 ORTH2//AT5G65360//HTA6//H2B//AT5G10390//HTA13//AT3G27360//NRP2//AT1G09200//AT2G37470//HIS4 GO:0006323 DNA packaging BP 4.39488237019793e-09 ORTH2//AT5G65360//HTA6//H2B//AT5G10390//HTA13//AT3G27360//NRP2//AT1G09200//AT2G37470//HIS4 GO:0006333 chromatin assembly or disassembly BP 6.14019358270628e-09 ORTH2//AT5G65360//HTA6//DDM2//H2B//AT5G10390//HTA13//AT3G27360//NRP2//HTA8//AT1G09200//AT2G37470//HIS4 GO:0006334 nucleosome assembly BP 1.49686706272828e-08 AT5G65360//HTA6//H2B//AT5G10390//HTA13//AT3G27360//NRP2//AT1G09200//AT2G37470//HIS4 GO:0034728 nucleosome organization BP 1.49686706272828e-08 AT5G65360//HTA6//H2B//AT5G10390//HTA13//AT3G27360//NRP2//AT1G09200//AT2G37470//HIS4 GO:0008283 cell proliferation BP 1.86200812524802e-08 ORTH2//ICU2//HTA6//DDM2//MCM3//H2B//AT3G54750//AESP//HTA13//NRP2//HTA8//PRS//AT1G09200//EMB2813//ATPCNA2//HMR GO:0051276 chromosome organization BP 9.94020939715267e-08 ORTH2//TOZ//ICU2//AT5G65360//GR-RBP3//HTA6//DDM2//MCM3//H2B//AT5G10390//HTA11//AT3G54750//AESP//DDB1B//HTA13//AT3G27360//GYRA//NRP2//HTA8//AT1G09200//CTF18//EMB2813//AT2G37470//HIS4//ATPCNA2//HEN2 GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 4.30841487361625e-07 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 5.2091714764352e-07 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0006325 chromatin organization BP 7.22965391628748e-07 ORTH2//ICU2//AT5G65360//GR-RBP3//HTA6//DDM2//MCM3//H2B//AT5G10390//HTA11//AT3G54750//AESP//HTA13//AT3G27360//NRP2//HTA8//AT1G09200//EMB2813//AT2G37470//HIS4//ATPCNA2//HEN2 GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 7.53085599545188e-07 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0006220 pyrimidine nucleotide metabolic process BP 9.00687589417742e-07 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0072528 pyrimidine-containing compound biosynthe... BP 1.27544646076691e-06 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0072527 pyrimidine-containing compound metabolic... BP 2.09909211781654e-06 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0009165 nucleotide biosynthetic process BP 2.96943070220441e-06 AT4G36580//AT5G61880//GR-RBP3//CRF3//UBP21//Cpn60alpha2//PDE340//AtCBF5//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108//HDA13 GO:1901293 nucleoside phosphate biosynthetic proces... BP 3.140176727392e-06 AT4G36580//AT5G61880//GR-RBP3//CRF3//UBP21//Cpn60alpha2//PDE340//AtCBF5//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108//HDA13 GO:0006261 DNA-dependent DNA replication BP 4.74846944500863e-06 ORTH2//RECQSIM//ICU2//DDM2//MCM3//HMGB6//AT3G60660//GYRA//AT2G24970//CTF18//EMB2813//ATPCNA2 GO:0009260 ribonucleotide biosynthetic process BP 1.29278542299349e-05 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0046390 ribose phosphate biosynthetic process BP 1.37996103130122e-05 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0006260 DNA replication BP 1.96784303514584e-05 ORTH2//RECQSIM//ICU2//DDM2//MCM3//HMGB6//AT3G60660//AT3G54750//AESP//PSF2//GYRA//AT2G24970//CTF18//EMB2813//ATPCNA2 GO:0032259 methylation BP 4.27668944647244e-05 ORTH2//TOZ//ICU2//GR-RBP3//DDM2//MCM3//AtCBF5//ROC2//RBL//HTA11//AT3G54750//AT4G28830//AESP//ATPRMT3//AT1G63660//HTA8//EMB2813//HDA13//ATPCNA2//HEN2 GO:0006259 DNA metabolic process BP 4.36266219086597e-05 ORTH2//RECQSIM//ICU2//AT5G61880//DDM2//MCM3//CYCA3;1//HMGB6//AT3G60660//HTA11//AT3G54750//AESP//DDB1B//PSF2//AT3G02060//GYRA//HTA8//AT2G24970//CTF18//EMB2813//ATPCNA2 GO:0009259 ribonucleotide metabolic process BP 6.75552770679095e-05 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108 GO:0043414 macromolecule methylation BP 0.000115945330681838 ORTH2//TOZ//ICU2//GR-RBP3//DDM2//MCM3//AtCBF5//ROC2//RBL//HTA11//AT3G54750//AESP//ATPRMT3//AT1G63660//HTA8//EMB2813//HDA13//ATPCNA2//HEN2 GO:0006996 organelle organization BP 0.000388746530493257 ORTH2//TOZ//ICU2//AT5G65360//GR-RBP3//HTA6//DDM2//MCM3//EMB139//H2B//AT5G14580//AT5G10390//HTA11//AT3G54750//FLN1//MRL7//AESP//DDB1B//ATPRMT3//HTA13//AT3G27360//NAI2//GYRA//FLN2//NRP2//ATECB2//EMB1047//HTA8//AT1G09200//CTF18//EMB2813//AT1G62480//AT2G37470//HIS4//ATPCNA2//HEN2//HMR GO:0006305 DNA alkylation BP 0.000391236989631338 ORTH2//ICU2//DDM2//MCM3//HTA11//AT3G54750//HTA8//EMB2813//ATPCNA2 GO:0006306 DNA methylation BP 0.000391236989631338 ORTH2//ICU2//DDM2//MCM3//HTA11//AT3G54750//HTA8//EMB2813//ATPCNA2 GO:0044728 DNA methylation or demethylation BP 0.000391236989631338 ORTH2//ICU2//DDM2//MCM3//HTA11//AT3G54750//HTA8//EMB2813//ATPCNA2 GO:0006479 protein methylation BP 0.000396942523315579 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//ATPRMT3//HTA8//EMB2813//ATPCNA2//HEN2 GO:0008213 protein alkylation BP 0.000396942523315579 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//ATPRMT3//HTA8//EMB2813//ATPCNA2//HEN2 GO:0006304 DNA modification BP 0.000416241446043506 ORTH2//ICU2//DDM2//MCM3//HTA11//AT3G54750//HTA8//EMB2813//ATPCNA2 GO:0009117 nucleotide metabolic process BP 0.000444988896470837 AT4G36580//AT5G61880//GR-RBP3//CRF3//UBP21//Cpn60alpha2//PDE340//AtCBF5//RBL//ATNUDX25//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108//G6PD3//HDA13 GO:1901137 carbohydrate derivative biosynthetic pro... BP 0.000451510459383482 ATSPX1//AT4G36580//AT5G61880//GR-RBP3//AT5G46850//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//ATACP5//AT3G10530//GYRA//AT1G63660//FLN2//PHO1;H1//EMB3108 GO:0006753 nucleoside phosphate metabolic process BP 0.000457963828781099 AT4G36580//AT5G61880//GR-RBP3//CRF3//UBP21//Cpn60alpha2//PDE340//AtCBF5//RBL//ATNUDX25//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108//G6PD3//HDA13 GO:0034641 cellular nitrogen compound metabolic pro... BP 0.000645386715662437 RPS16//AT4G17610//ORTH2//ATSPX1//AT4G36580//TOZ//RECQSIM//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//MCM3//CYCA3;1//HMGB6//Cpn60alpha2//AT5G14580//AT5G08600//PDE340//GDH2//AT3G60660//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//ADC2//MRL7//AT4G26600//AESP//DDB1B//ATNUDX25//PSF2//ATPRMT3//AtdNK//AtGRP4//AT3G18510//ATACP5//FOLB1//AT3G02060//AT3G10530//GYRA//ATHY2//AT1G63210//AT1G63660//FLN2//BBX16//ATECB2//PHO1;H1//GASA1//HTA8//PRS//AT2G24970//EMB3108//ATMYB38//CTF18//G6PD3//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//OTP81//HMR GO:0055086 nucleobase-containing small molecule met... BP 0.000734665857497055 AT4G36580//AT5G61880//GR-RBP3//CRF3//UBP21//Cpn60alpha2//PDE340//AtCBF5//RBL//ATNUDX25//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108//G6PD3//HDA13 GO:0040029 regulation of gene expression, epigeneti... BP 0.000760068559802881 RPS16//ORTH2//ICU2//DDM2//MCM3//HTA11//AT3G54750//AESP//HTA8//EMB2813//HDA13//ATPCNA2//HEN2 GO:0006139 nucleobase-containing compound metabolic... BP 0.000898826273326983 RPS16//AT4G17610//ORTH2//ATSPX1//AT4G36580//TOZ//RECQSIM//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//MCM3//CYCA3;1//HMGB6//Cpn60alpha2//AT5G14580//AT5G08600//PDE340//AT3G60660//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//MRL7//AT4G26600//AESP//DDB1B//ATNUDX25//PSF2//ATPRMT3//AtdNK//AtGRP4//AT3G18510//ATACP5//AT3G02060//AT3G10530//GYRA//AT1G63210//AT1G63660//FLN2//BBX16//ATECB2//PHO1;H1//HTA8//PRS//AT2G24970//EMB3108//ATMYB38//CTF18//G6PD3//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//OTP81//HMR GO:0051052 regulation of DNA metabolic process BP 0.000928256577604824 ORTH2//RECQSIM//ICU2//MCM3//HTA11//AESP//HTA8//EMB2813//ATPCNA2 GO:0009790 embryo development BP 0.00110048260307152 ATDI21//TOZ//CRF3//DDM2//EMB139//Cpn60alpha2//FLN1//ADC2//AESP//DDB1B//BE1//AT1G63210//EMB1047//EMB2219//HEN2 GO:0016571 histone methylation BP 0.00110563574673569 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//HTA8//EMB2813//ATPCNA2//HEN2 GO:0044702 single organism reproductive process BP 0.0013651023657419 AT4G36580//TOZ//ICU2//AT5G61880//GR-RBP3//CRF3//DDM2//MCM3//EMB139//AtCXE18//Cpn60alpha2//RBL//HTA11//FLN1//ADC2//AESP//DDB1B//ATPRMT3//FAR2//AT3G13190//BE1//ROH1//EMB1047//HTA8//PRS//EMB2219//AT1G67180//AtCYS2//BGLU14//HDA13//HEN2 GO:0034968 histone lysine methylation BP 0.00141483120296206 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//HTA8//EMB2813//ATPCNA2 GO:0018022 peptidyl-lysine methylation BP 0.0014782399104251 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//HTA8//EMB2813//ATPCNA2 GO:0048316 seed development BP 0.00168206650319548 TOZ//CRF3//DDM2//EMB139//Cpn60alpha2//FLN1//ADC2//AESP//DDB1B//BE1//ROH1//EMB1047//EMB2219//AtCYS2//HDA13//HEN2 GO:0046483 heterocycle metabolic process BP 0.00173072155002641 RPS16//AT4G17610//ORTH2//ATSPX1//AT4G36580//TOZ//RECQSIM//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//MCM3//CYCA3;1//HMGB6//Cpn60alpha2//AT5G14580//AT5G08600//PDE340//AT3G60660//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//MRL7//AT4G26600//AESP//DDB1B//ATNUDX25//PSF2//ATPRMT3//AtdNK//AtGRP4//AT3G18510//ATACP5//FOLB1//AT3G02060//AT3G10530//GYRA//ATHY2//AT1G63210//AT1G63660//FLN2//BBX16//ATECB2//PHO1;H1//GASA1//HTA8//PRS//AT2G24970//EMB3108//ATMYB38//CTF18//G6PD3//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//OTP81//HMR GO:0006807 nitrogen compound metabolic process BP 0.00184488128440701 RPS16//AT4G17610//ORTH2//ATSPX1//AT4G36580//TOZ//RECQSIM//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//MCM3//CYCA3;1//HMGB6//Cpn60alpha2//AT5G14580//AT5G08600//PDE340//GDH2//AT3G60660//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//ADC2//ATMTAN2//MRL7//AT4G26600//AESP//DDB1B//ATNUDX25//PSF2//ATPRMT3//AtdNK//AtGRP4//AT3G18510//ATACP5//FOLB1//AT3G02060//AT3G10530//GYRA//CS26//ATHY2//AT1G63210//AT1G63660//FLN2//BBX16//ATECB2//PHO1;H1//GASA1//HTA8//PRS//AT2G24970//EMB3108//ATMYB38//CTF18//G6PD3//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//OTP81//HMR GO:0051726 regulation of cell cycle BP 0.00190903224917274 ORTH2//TOZ//RECQSIM//ICU2//MCM3//CYCA3;1//AESP//DDB1B//CYCA3;2//EMB2813 GO:0010154 fruit development BP 0.00203440250550153 TOZ//CRF3//DDM2//EMB139//Cpn60alpha2//FLN1//ADC2//AESP//DDB1B//BE1//ROH1//EMB1047//EMB2219//AtCYS2//HDA13//HEN2 GO:0010072 primary shoot apical meristem specificat... BP 0.00251471864879732 TOZ//AESP//DDB1B GO:0090421 embryonic meristem initiation BP 0.00251471864879732 TOZ//AESP//DDB1B GO:0051567 histone H3-K9 methylation BP 0.00279598351677068 ORTH2//ICU2//DDM2//MCM3//AT3G54750//AESP//EMB2813//ATPCNA2 GO:0061647 histone H3-K9 modification BP 0.00279598351677068 ORTH2//ICU2//DDM2//MCM3//AT3G54750//AESP//EMB2813//ATPCNA2 GO:0019693 ribose phosphate metabolic process BP 0.00287607084990178 AT4G36580//AT5G61880//GR-RBP3//Cpn60alpha2//PDE340//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108//G6PD3 GO:0009880 embryonic pattern specification BP 0.00305259705551729 TOZ//AESP//DDB1B GO:0006725 cellular aromatic compound metabolic pro... BP 0.00308019383139685 RPS16//AT4G17610//ORTH2//ATSPX1//AT4G36580//TOZ//RECQSIM//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//MCM3//CYCA3;1//HMGB6//Cpn60alpha2//AT5G14580//AT5G08600//PDE340//GDH2//AT3G60660//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//MRL7//AT4G26600//AESP//DDB1B//ATNUDX25//PSF2//ATPRMT3//AtdNK//AtGRP4//AT3G18510//ATACP5//FOLB1//AT3G02060//AT3G10530//GYRA//ATHY2//AT1G63210//AT1G63660//FLN2//BBX16//ATECB2//PHO1;H1//GASA1//HTA8//PRS//AT2G24970//EMB3108//ATMYB38//CTF18//G6PD3//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//OTP81//HMR GO:0006275 regulation of DNA replication BP 0.00320099056381527 ORTH2//RECQSIM//ICU2//MCM3//AESP//EMB2813//ATPCNA2 GO:0006270 DNA replication initiation BP 0.00332802513302519 ORTH2//RECQSIM//ICU2//MCM3//EMB2813 GO:0009793 embryo development ending in seed dorman... BP 0.00349159929740814 TOZ//CRF3//DDM2//EMB139//Cpn60alpha2//FLN1//ADC2//AESP//DDB1B//BE1//EMB1047//EMB2219//HEN2 GO:0006338 chromatin remodeling BP 0.00365594153501235 ORTH2//HTA11//HTA8 GO:0016570 histone modification BP 0.00431400133604062 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//HTA8//EMB2813//ATPCNA2//HEN2 GO:0043933 macromolecular complex subunit organizat... BP 0.00491166007161876 ORTH2//ICU2//AT5G65360//GR-RBP3//HTA6//DDM2//ERF1-1//MCM3//H2B//AT5G10390//HTA11//AT3G54750//AESP//HTA13//AT3G27360//NRP2//HTA8//AT1G09200//EMB2813//AT2G37470//HIS4//ATPCNA2//HEN2//AT2G47020 GO:0048508 embryonic meristem development BP 0.00506813552044442 TOZ//AESP//DDB1B GO:0016568 chromatin modification BP 0.00533528371228984 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//HTA11//AT3G54750//AESP//HTA8//EMB2813//ATPCNA2//HEN2 GO:0018205 peptidyl-lysine modification BP 0.00601641857603402 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//HTA8//EMB2813//ATPCNA2 GO:0003006 developmental process involved in reprod... BP 0.0061065138682344 AT4G36580//TOZ//ICU2//AT5G61880//GR-RBP3//CRF3//DDM2//MCM3//EMB139//AtCXE18//Cpn60alpha2//RBL//HTA11//FLN1//ADC2//AESP//DDB1B//ATPRMT3//FAR2//AT3G13190//BE1//ROH1//EMB1047//HTA8//PRS//EMB2219//AT1G67180//AtCYS2//BGLU14//HDA13//HEN2 GO:0010162 seed dormancy process BP 0.00614562056755395 TOZ//AESP//DDB1B//AtCYS2//HDA13//HEN2 GO:0022611 dormancy process BP 0.00614562056755395 TOZ//AESP//DDB1B//AtCYS2//HDA13//HEN2 GO:0006281 DNA repair BP 0.0062031288030628 ORTH2//RECQSIM//ICU2//CYCA3;1//AESP//DDB1B//AT3G02060//ATPCNA2 GO:0006606 protein import into nucleus BP 0.00644202493257434 TOZ//CRF3//AT5G14580//AT4G26600//ATPRMT3//AT1G63660//AT1G06720 GO:0044744 protein targeting to nucleus BP 0.00644202493257434 TOZ//CRF3//AT5G14580//AT4G26600//ATPRMT3//AT1G63660//AT1G06720 GO:0051170 nuclear import BP 0.00644202493257434 TOZ//CRF3//AT5G14580//AT4G26600//ATPRMT3//AT1G63660//AT1G06720 GO:1902593 single-organism nuclear import BP 0.00644202493257434 TOZ//CRF3//AT5G14580//AT4G26600//ATPRMT3//AT1G63660//AT1G06720 GO:0034504 protein localization to nucleus BP 0.00674261072885765 TOZ//CRF3//AT5G14580//AT4G26600//ATPRMT3//AT1G63660//AT1G06720 GO:0010564 regulation of cell cycle process BP 0.00684762075439445 TOZ//ICU2//CYCA3;1//AESP//DDB1B//CYCA3;2 GO:0071840 cellular component organization or bioge... BP 0.00723680483443476 ORTH2//TOZ//ICU2//AT5G65360//GR-RBP3//HTA6//DDM2//ERF1-1//MCM3//EMB139//AtCXE18//H2B//AT5G14580//AT5G10390//AT5G08600//ROC2//HTA11//AT3G54750//FLN1//ADC2//MRL7//AT4G26600//AESP//DDB1B//ATPRMT3//FAR2//HTA13//AtGRP4//AT3G27360//NAI2//GYRA//AT1G74270//ROH1//FLN2//AT1G06720//NRP2//ATECB2//EMB1047//GASA1//HTA8//AT1G09200//CTF18//EMB2813//AT1G62480//BGLU14//AT2G37470//HIS4//ATPCNA2//HEN2//AT2G47020//HMR" GO:0034654 nucleobase-containing compound biosynthe... BP 0.00738215166222008 RPS16//ORTH2//ATSPX1//AT4G36580//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//Cpn60alpha2//PDE340//AtCBF5//RBL//FLN1//MRL7//AESP//ATPRMT3//AT3G18510//ATACP5//AT3G10530//GYRA//AT1G63210//AT1G63660//FLN2//BBX16//PHO1;H1//PRS//EMB3108//ATMYB38//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//HMR GO:1901360 organic cyclic compound metabolic proces... BP 0.00824029613567086 RPS16//AT4G17610//ORTH2//ATSPX1//AT4G36580//TOZ//RECQSIM//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//MCM3//CYCA3;1//HMGB6//Cpn60alpha2//AT5G14580//AT5G08600//PDE340//GDH2//AT3G60660//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//MRL7//AT4G26600//AESP//DDB1B//ATNUDX25//PSF2//ATPRMT3//AtdNK//AtGRP4//AT3G18510//ATACP5//FOLB1//AT3G02060//AT3G10530//GYRA//ATHY2//AT1G63210//AT1G63660//FLN2//BBX16//ATECB2//PHO1;H1//GASA1//HTA8//PRS//AT2G24970//EMB3108//ATMYB38//CTF18//G6PD3//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//OTP81//HMR GO:0044699 single-organism process BP 0.00824893584919557 RPS16//ATDI21//ORTH2//SULTR3;5//ATSPX1//AT5G19970//AT4G36580//TOZ//RECQSIM//ICU2//AtXYP1//AT5G61880//GR-RBP3//HTA6//CRF3//ATWRKY27//DDM2//AT5G48800//ERF1-1//UBP21//AT5G46850//MCM3//CYCA3;1//EMB139//ATYSL2//AtCXE18//H2B//Cpn60alpha2//AT5G14580//PDE340//GDH2//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//AT3G53220//DIN11//ADC2//ATMTAN2//GDU1//AT4G26600//AESP//AT4G22490//DDB1B//AT4G11290//AT4G10950//AGD13//AT4G01130//ATNUDX25//ATPRMT3//TPPD//AT1G66760//FAR2//HTA13//ETP2//AT3G13190//BE1//AT3G18510//ATACP5//FOLB1//AtGDPD1//AT3G02060//AT3G10530//GYRA//CS26//ATHY2//AT1G68080//AT1G63210//AT1G63660//ROH1//FLN2//BBX16//CYCA3;2//AT1G19530//AT1G06720//NRP2//AT1G28390//AT1G65850//PGM//PHO1;H1//EMB1047//GASA1//HTA8//PRS//EMB3108//ATMYB38//EMB2219//AT1G09200//AT1G12010//AT1G67180//CTF18//G6PD3//EMB2813//AT1G62510//AT1G62480//ATFD3//AtCYS2//MOT1//BGLU14//AT2G18480//HDA13//ATPCNA2//ARR8//HEN2//AT2G47020//HMR//BGLU15//BGAL9 GO:0016043 cellular component organization BP 0.00829056007437733 ORTH2//TOZ//ICU2//AT5G65360//GR-RBP3//HTA6//DDM2//ERF1-1//MCM3//EMB139//AtCXE18//H2B//AT5G14580//AT5G10390//HTA11//AT3G54750//FLN1//ADC2//MRL7//AESP//DDB1B//ATPRMT3//FAR2//HTA13//AtGRP4//AT3G27360//NAI2//GYRA//ROH1//FLN2//NRP2//ATECB2//EMB1047//GASA1//HTA8//AT1G09200//CTF18//EMB2813//AT1G62480//BGLU14//AT2G37470//HIS4//ATPCNA2//HEN2//AT2G47020//HMR GO:0016569 covalent chromatin modification BP 0.00838277353150339 ORTH2//ICU2//GR-RBP3//DDM2//MCM3//AT3G54750//AESP//HTA8//EMB2813//ATPCNA2//HEN2 GO:0048580 regulation of post-embryonic development BP 0.00838277353150339 TOZ//ICU2//GR-RBP3//DDM2//MCM3//HTA11//AESP//DDB1B//HTA8//ARR8//HEN2 GO:0010431 seed maturation BP 0.00842337338665923 TOZ//AESP//DDB1B//AtCYS2//HDA13//HEN2 GO:0044271 cellular nitrogen compound biosynthetic ... BP 0.00852591561270039 RPS16//ORTH2//ATSPX1//AT4G36580//ICU2//AT5G61880//GR-RBP3//CRF3//ATWRKY27//DDM2//UBP21//Cpn60alpha2//PDE340//AtCBF5//RBL//FLN1//ADC2//MRL7//AESP//ATPRMT3//AT3G18510//ATACP5//AT3G02060//AT3G10530//GYRA//ATHY2//AT1G63210//AT1G63660//FLN2//BBX16//PHO1;H1//GASA1//PRS//EMB3108//ATMYB38//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//HMR GO:0048825 cotyledon development BP 0.00911716396885143 TOZ//CRF3//AESP//DDB1B GO:0048831 regulation of shoot system development BP 0.00933066121407735 TOZ//ICU2//GR-RBP3//DDM2//MCM3//HTA11//AESP//HTA8//ARR8//HEN2 GO:0090407 organophosphate biosynthetic process BP 0.00934356717619285 AT4G36580//AT5G61880//GR-RBP3//CRF3//UBP21//AT5G46850//Cpn60alpha2//PDE340//AtCBF5//RBL//ATPRMT3//AT3G18510//AT3G10530//GYRA//AT1G63660//FLN2//EMB3108//HDA13 GO:0022414 reproductive process BP 0.0103910103317866 AT4G36580//TOZ//ICU2//AT5G61880//GR-RBP3//CRF3//DDM2//MCM3//EMB139//AtCXE18//Cpn60alpha2//RBL//HTA11//FLN1//ADC2//AESP//DDB1B//ATPRMT3//FAR2//AT3G13190//BE1//ROH1//EMB1047//HTA8//PRS//EMB2219//AT1G67180//AtCYS2//BGLU14//HDA13//HEN2 GO:0090304 nucleic acid metabolic process BP 0.0120440646172901 RPS16//AT4G17610//ORTH2//ATSPX1//TOZ//RECQSIM//ICU2//AT5G61880//CRF3//ATWRKY27//DDM2//MCM3//CYCA3;1//HMGB6//AT5G14580//AT5G08600//AT3G60660//AtCBF5//ROC2//RBL//HTA11//AT3G54750//FLN1//MRL7//AT4G26600//AESP//DDB1B//PSF2//ATPRMT3//AtGRP4//ATACP5//AT3G02060//GYRA//AT1G63210//AT1G63660//FLN2//BBX16//ATECB2//PHO1;H1//HTA8//PRS//AT2G24970//ATMYB38//CTF18//EMB2813//HDA13//ATPCNA2//ARR8//HEN2//OTP81//HMR" GO:0006974 cellular response to DNA damage stimulus BP 0.012531925425807 ORTH2//RECQSIM//ICU2//CYCA3;1//AESP//DDB1B//AT3G02060//ATPCNA2 GO:0007049 cell cycle BP 0.0133387269904535 ORTH2//TOZ//RECQSIM//ICU2//DDM2//MCM3//CYCA3;1//AESP//DDB1B//FAR2//CYCA3;2//CTF18//EMB2813//HEN2 GO:0001510 RNA methylation BP 0.0138539404310008 TOZ//AtCBF5//ROC2//RBL//ATPRMT3//AT1G63660//HTA8//HDA13 GO:0006415 translational termination BP 0.0143172063150376 ERF1-1//AT2G47020 GO:0010629 negative regulation of gene expression BP 0.0149571038659409 RPS16//ORTH2//ATSPX1//ATWRKY27//DDM2//MCM3//AESP//ATACP5//PHO1;H1//HDA13//HEN2 GO:0009247 glycolipid biosynthetic process BP 0.0151707679846292 ATSPX1//AT5G46850//ATACP5//PHO1;H1 GO:0000086 G2/M transition of mitotic cell cycle BP 0.0162001183585039 ICU2//CYCA3;1//AESP//CYCA3;2 GO:0010389 regulation of G2/M transition of mitotic... BP 0.0162001183585039 ICU2//CYCA3;1//AESP//CYCA3;2