GOID TERM ONTOLOGY pValue Genes GO:0035966 response to topologically incorrect prot... BP 0.000537444879269177 AT4G17270//AT5G42010//ATUBC8//ATBZIP61//AT3G48760//AT4G38900//AT4G25030//CCS52A1//AT4G20150//AT4G02580//AT4G00585//AT3G28450//ANAC055//ATS6A.2//AtHIR2//ATMAPK6//CYCA2;3 GO:0006623 protein targeting to vacuole BP 0.00171330716119217 ckl8//ATVTI11//VPS24.1//AtVSR2//ARFC1//BPS1//AT1G65720//AT1G09920//GRV2 GO:0072665 protein localization to vacuole BP 0.00171330716119217 ckl8//ATVTI11//VPS24.1//AtVSR2//ARFC1//BPS1//AT1G65720//AT1G09920//GRV2 GO:0072666 establishment of protein localization to... BP 0.00171330716119217 ckl8//ATVTI11//VPS24.1//AtVSR2//ARFC1//BPS1//AT1G65720//AT1G09920//GRV2 GO:0006511 ubiquitin-dependent protein catabolic pr... BP 0.00205845565619913 AT4G17270//AT5G62800//ATUBC8//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//UFO//RUB2 GO:0019941 modification-dependent protein catabolic... BP 0.00235974698311826 AT4G17270//AT5G62800//ATUBC8//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//UFO//RUB2 GO:0043632 modification-dependent macromolecule cat... BP 0.00235974698311826 AT4G17270//AT5G62800//ATUBC8//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//UFO//RUB2 GO:0010256 endomembrane system organization BP 0.00245158333911278 ACBP//AT1G16560//AALP//ATVTI11//TUB6//AT5G10960//AT4G24840//ARFC1//NAD-ME1//PIP2;6//GRV2//RTNLB13 GO:0051603 proteolysis involved in cellular protein... BP 0.00254890440047837 AT4G17270//AT5G62800//ATUBC8//TUB6//AT3G55590//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//UFO//RUB2 GO:0044257 cellular protein catabolic process BP 0.00298913309779294 AT4G17270//AT5G62800//ATUBC8//TUB6//AT3G55590//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//UFO//RUB2 GO:0010091 trichome branching BP 0.00333558524315625 CCS52A1//CML42//STI GO:0007034 vacuolar transport BP 0.0036527010696469 ckl8//ATVTI11//VPS24.1//AtVSR2//ARFC1//BPS1//AT1G65720//AT1G09920//GRV2 GO:0030163 protein catabolic process BP 0.00406104596177875 AT4G17270//AT5G62800//ATUBC8//TUB6//AT3G55590//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//UFO//RUB2 GO:0006508 proteolysis BP 0.00635504743707735 AT4G17270//AT5G62800//AALP//ILL3//CEP1//ATUBC8//TUB6//AT3G55590//UBP18//ATSBT3.18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ILR1//ATS6A.2//AT1G02300//scpl31//AT1G51550//CYCA2;3//AtCCP3//DEG3//UFO//RUB2 GO:0048544 recognition of pollen BP 0.00776650529086813 AT4G27290//AT4G27300//AT2G24620//AT1G61430 GO:0048580 regulation of post-embryonic development BP 0.00851583451211758 ATCUL4//ATDOG1//AtTCP14//HSI2-L1//MED25//ATTOPII//AtVGT1//AtETR1//ATMAPK6//CYCA2;3//GAI//ASIL1//AtGRF3//AtTHO6 GO:0008037 cell recognition BP 0.00895056477354532 AT4G27290//AT4G27300//AT2G24620//AT1G61430 GO:0009875 pollen-pistil interaction BP 0.00895056477354532 AT4G27290//AT4G27300//AT2G24620//AT1G61430 GO:0007030 Golgi organization BP 0.00906792833295026 ACBP//AT1G16560//AALP//ATVTI11//TUB6//AT5G10960//AT4G24840//ARFC1//NAD-ME1//PIP2;6 GO:0080050 regulation of seed development BP 0.0091971058815334 ATDOG1//HSI2-L1//GAI GO:0030968 endoplasmic reticulum unfolded protein r... BP 0.00937895375603086 AT5G42010//ATBZIP61//AT3G48760//AT4G38900//AT4G25030//AT3G28450//ANAC055//AtHIR2//ATMAPK6 GO:0006986 response to unfolded protein BP 0.00991954716234039 AT5G42010//ATBZIP61//AT3G48760//AT4G38900//AT4G25030//AT3G28450//ANAC055//AtHIR2//ATMAPK6 GO:0034620 cellular response to unfolded protein BP 0.00991954716234039 AT5G42010//ATBZIP61//AT3G48760//AT4G38900//AT4G25030//AT3G28450//ANAC055//AtHIR2//ATMAPK6 GO:0035967 cellular response to topologically incor... BP 0.00991954716234039 AT5G42010//ATBZIP61//AT3G48760//AT4G38900//AT4G25030//AT3G28450//ANAC055//AtHIR2//ATMAPK6 GO:0044265 cellular macromolecule catabolic process BP 0.010945465923535 AT4G17270//ADA2B//AT5G62800//ATUBC8//TUB6//AT3G55590//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//AT1G55590//UFO//RUB2 GO:1900140 regulation of seedling development BP 0.0154999064924049 AtTCP14//HSI2-L1//AtETR1//GAI//ASIL1 GO:0043248 proteasome assembly BP 0.0167721051598047 AT4G17270//ATUBC8//CCS52A1//AT4G20150//AT4G02580//AT4G00585//ATS6A.2//CYCA2;3 GO:0051788 response to misfolded protein BP 0.0167721051598047 AT4G17270//ATUBC8//CCS52A1//AT4G20150//AT4G02580//AT4G00585//ATS6A.2//CYCA2;3 GO:0010564 regulation of cell cycle process BP 0.0169020327749778 ATCUL4//AT5G01910//HSI2-L1//CCS52A1//CYCA2;3 GO:0009846 pollen germination BP 0.0187533954703358 ATCSLD4//ATWRKY34//SEC5A GO:0048523 negative regulation of cellular process BP 0.018792865510847 ADA2B//SHA1//AZF3//ROXY2//AT3G59940//AtMYB41//AT4G25030//AFB1//DMS4//FDM3//ATTOPII//ANAC055//AtHIR2//AT1G15670//CPSF73-I//AtETR1//AT1G51550//ATMAPK6//CYCA2;3//GAI//AtCCP3//AtTHO6 GO:0050793 regulation of developmental process BP 0.0216612862460789 XLG3//LNG1//SHA1//ATCUL4//ATDOG1//ATUBC8//AtTCP14//HSI2-L1//CCS52A1//MED25//ATTOPII//AtVGT1//AtETR1//ATMAPK6//CYCA2;3//GAI//ASIL1//AtGRF3//PDF1//ATHB-15//STI//AtTHO6 GO:0009888 tissue development BP 0.0248134613523202 LNG1//SHA1//ATXTH20//ATCUL4//ATUBC8//EMB40//TUB6//AT3G55960//HSI2-L1//AT4G27290//CCS52A1//CML42//AFB1//SEC5A//ATTOPII//RSH4//AtVGT1//CPSF73-I//ATMAPK6//SCD1//ETHE1//CYCA2;3//AT1G62770//PDF1//AT1G08590//ATHB-15//AT1G30870//UFO//STI GO:2000026 regulation of multicellular organismal d... BP 0.025477007962779 XLG3//LNG1//ATCUL4//ATDOG1//AtTCP14//HSI2-L1//MED25//ATTOPII//AtVGT1//AtETR1//ATMAPK6//CYCA2;3//GAI//ASIL1//AtGRF3//PDF1//ATHB-15//AtTHO6 GO:0090626 plant epidermis morphogenesis BP 0.0263695091750686 EMB40//CCS52A1//CML42//AFB1//SEC5A//AtVGT1//AT1G08590//ATHB-15//STI GO:0034976 response to endoplasmic reticulum stress BP 0.0266184392747496 AT5G20950//AT5G42010//ATBZIP61//AT3G48760//AT4G38900//AT4G25030//AT1G17860//AT3G28450//ANAC055//AtHIR2//ATMAPK6 GO:0009057 macromolecule catabolic process BP 0.028549795525299 AT4G17270//ADA2B//AT5G62800//ATUBC8//TUB6//AT3G55590//UBP18//CCS52A1//AT4G20150//AFB1//AT4G02580//AT4G00585//UBP7//PAE2//ATS6A.2//AT1G51550//CYCA2;3//AT1G55590//UFO//RUB2 GO:0006275 regulation of DNA replication BP 0.0300428153236526 AT5G01910//CCS52A1//ATTOPII//CYCA2;3 GO:0009968 negative regulation of signal transducti... BP 0.0311911128475322 AT3G59940//AT1G15670//AtETR1//GAI//AtTHO6 GO:0010648 negative regulation of cell communicatio... BP 0.0311911128475322 AT3G59940//AT1G15670//AtETR1//GAI//AtTHO6 GO:0023057 negative regulation of signaling BP 0.0311911128475322 AT3G59940//AT1G15670//AtETR1//GAI//AtTHO6 GO:0048582 positive regulation of post-embryonic de... BP 0.03275523687711 HSI2-L1//MED25//AtVGT1//CYCA2;3 GO:0051239 regulation of multicellular organismal p... BP 0.0351257753068339 XLG3//LNG1//ATCUL4//ATDOG1//AtTCP14//HSI2-L1//MED25//ATTOPII//AtVGT1//AtETR1//ATMAPK6//CYCA2;3//GAI//ASIL1//AtGRF3//PDF1//ATHB-15//AtTHO6 GO:0009735 response to cytokinin BP 0.0370801084513558 ADA2B//ARR18//AT3G59940//AtTCP14//AT1G15670//AtETR1 GO:0090558 plant epidermis development BP 0.0385765301175954 LNG1//EMB40//TUB6//AT3G55960//AT4G27290//CCS52A1//CML42//AFB1//SEC5A//RSH4//AtVGT1//ATMAPK6//SCD1//CYCA2;3//AT1G08590//ATHB-15//AT1G30870//STI GO:0003333 amino acid transmembrane transport BP 0.0390640368503509 CAT7//CAT4 GO:0009960 endosperm development BP 0.0390640368503509 ATUBC8//ETHE1 GO:0010099 regulation of photomorphogenesis BP 0.0390640368503509 ATCUL4//AtTHO6 GO:0010090 trichome morphogenesis BP 0.0412519065907576 EMB40//CCS52A1//CML42//SEC5A//ATHB-15//STI GO:0051726 regulation of cell cycle BP 0.0438043862207515 ATCUL4//AT5G01910//HSI2-L1//CCS52A1//ATTOPII//CPSF73-I//CYCA2;3 GO:0010229 inflorescence development BP 0.0467498127078487 AtTCP14//ATMAPK6 GO:0009853 photorespiration BP 0.0480453730139149 AT4G17270//AT5G47890//AT4G20150//AT4G02580//AT4G00585//PAE2 GO:0010029 regulation of seed germination BP 0.0484032507321532 AtTCP14//HSI2-L1//GAI//ASIL1 GO:0051240 positive regulation of multicellular org... BP 0.0484032507321532 HSI2-L1//MED25//AtVGT1//CYCA2;3 GO:0010026 trichome differentiation BP 0.0504544677442194 EMB40//CCS52A1//CML42//SEC5A//ATHB-15//STI GO:0001558 regulation of cell growth BP 0.0513657089569798 LNG1//ALNS//ATUBC8//CCS52A1//CYCA2;3 GO:0007033 vacuole organization BP 0.0519502397122684 ATVTI11//AT5G10960//ARFC1//GRV2 GO:2000030 regulation of response to red or far red... BP 0.0549338028914071 ATCUL4//AtTHO6 GO:0051094 positive regulation of developmental pro... BP 0.0556353702651846 HSI2-L1//MED25//AtVGT1//CYCA2;3 GO:0009723 response to ethylene BP 0.0613422304107545 XLG3//AALP//AT3G48760//AT4G25030//AT3G25190//ANAC055//AtETR1//AT1G63840//ATMAPK6//GAI//ATGSTU13 GO:0045892 negative regulation of transcription, DN... BP 0.0630821171411981 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0630821171411981 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:1903507 negative regulation of nucleic acid-temp... BP 0.0630821171411981 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:0000741 karyogamy BP 0.0635762558943357 EDA41//ATS6A.2 GO:0030865 cortical cytoskeleton organization BP 0.0635762558943357 EMB40//MPB2C GO:0010374 stomatal complex development BP 0.0635968463788948 AFB1//AtVGT1//ATMAPK6//SCD1//CYCA2;3//AT1G08590 GO:0051253 negative regulation of RNA metabolic pro... BP 0.0649866759277884 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:0010498 proteasomal protein catabolic process BP 0.068909850980817 ATUBC8//TUB6//AT3G55590//CCS52A1//ATS6A.2//CYCA2;3//UFO GO:0006305 DNA alkylation BP 0.0705292532975478 DMS4//FDM3//ATTOPII//AT3G12710//AT1G49590 GO:0006306 DNA methylation BP 0.0705292532975478 DMS4//FDM3//ATTOPII//AT3G12710//AT1G49590 GO:0051301 cell division BP 0.0706825787722398 ATCUL4//EMB40//HSI2-L1//CCS52A1//ATTOPII//ATMAPK6//SCD1//CYCA2;3//GRV2 GO:0000278 mitotic cell cycle BP 0.0709205481898801 ADA2B//ATCUL4//EMB40//AT5G01910//ATTOPII//CPSF73-I//SCD1//CYCA2;3//AT1G51200//STI GO:0043094 cellular metabolic compound salvage BP 0.0723634802179646 AT4G17270//AT5G47890//AT4G20150//AT4G02580//AT4G00585//PAE2 GO:0048284 organelle fusion BP 0.0726394475631361 EDA41//ATS6A.2 GO:1903825 organic acid transmembrane transport BP 0.0726394475631361 CAT7//CAT4 GO:0031324 negative regulation of cellular metaboli... BP 0.0729331016925053 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550//CYCA2;3//AtCCP3 GO:0010558 negative regulation of macromolecule bio... BP 0.0729722706990161 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:0045934 negative regulation of nucleobase-contai... BP 0.0729722706990161 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:2000113 negative regulation of cellular macromol... BP 0.0729722706990161 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:0010605 negative regulation of macromolecule met... BP 0.0742743499252062 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550//AT1G49590//CYCA2;3//AtCCP3//AtTHO6 GO:0022414 reproductive process BP 0.0745617367049674 AHL22//AN3//AT5G27980//SLK2//ATCUL4//ATDOG1//ckl8//ATUBC8//ROXY2//TUB6//AT5G10960//AT5G01910//AtTCP14//ATCSLD4//HSI2-L1//AT4G27290//AT4G27300//ATWRKY34//ATSBT3.18//CCS52A1//AFB1//MED25//DLAH//SEC5A//AT3G28850//ATTOPII//AtVGT1//ATS6A.2//ATMAPK6//ETHE1//GAI//SRS5//AT1G24030//ASIL1//DAZ1//AT2G24620//AT1G61430//AT1G08590//ATHB-15//AT1G51200//AT2G24320//GRV2//STI//AtTHO6 GO:0009736 cytokinin-activated signaling pathway BP 0.0760967824510451 ARR18//AT3G59940//AT1G15670//AtETR1 GO:0050665 hydrogen peroxide biosynthetic process BP 0.0760967824510451 ckl8//AtETR1//AT1G24030//STI GO:0071368 cellular response to cytokinin stimulus BP 0.0760967824510451 ARR18//AT3G59940//AT1G15670//AtETR1 GO:1903409 reactive oxygen species biosynthetic pro... BP 0.0760967824510451 ckl8//AtETR1//AT1G24030//STI GO:0051172 negative regulation of nitrogen compound... BP 0.0771868866806054 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:0006304 DNA modification BP 0.0776820067691319 DMS4//FDM3//ATTOPII//AT3G12710//AT1G49590 GO:0043161 proteasome-mediated ubiquitin-dependent ... BP 0.0776820067691319 ATUBC8//CCS52A1//ATS6A.2//CYCA2;3//UFO GO:0044728 DNA methylation or demethylation BP 0.0776820067691319 DMS4//FDM3//ATTOPII//AT3G12710//AT1G49590 GO:0006972 hyperosmotic response BP 0.0797781717727828 ATSK42//AALP//AZF3//TUB6//AT4G25030//ANAC055//AT1G63840//GAI//NAD-ME1 GO:0048609 multicellular organismal reproductive pr... BP 0.0821583287099095 ATCUL4//ATDOG1//TUB6//HSI2-L1//CCS52A1//ATS6A.2//GAI//ASIL1//DAZ1 GO:0048508 embryonic meristem development BP 0.0822460140391413 ATCUL4//HSI2-L1//AT1G08590 GO:0010014 meristem initiation BP 0.0850758829553586 ATCUL4//HSI2-L1//CPSF73-I//AT1G62770//ATHB-15//STI GO:0031327 negative regulation of cellular biosynth... BP 0.0860623261143195 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:0051128 regulation of cellular component organiz... BP 0.0860623261143195 LNG1//AT5G59700//ALNS//ATUBC8//EMB40//CCS52A1//SEC5A//CYCA2;3//ATHB-15//STI GO:0009739 response to gibberellin BP 0.0884350396583822 ATKO1//TUB6//AtTCP14//GASA2//AtETR1//GAI GO:0051510 regulation of unidimensional cell growth BP 0.0899486389638554 LNG1//ATUBC8//CCS52A1//CYCA2;3 GO:0009890 negative regulation of biosynthetic proc... BP 0.0907235440009444 ADA2B//AZF3//ROXY2//AtMYB41//AFB1//DMS4//FDM3//ATTOPII//CPSF73-I//AT1G51550 GO:0010431 seed maturation BP 0.0918658656025614 ATCUL4//ATDOG1//TUB6//HSI2-L1//GAI//ASIL1 GO:0009646 response to absence of light BP 0.0918867588423584 AHL22//ACBP