GOID TERM ONTOLOGY pValue Genes GO:0006875 cellular metal ion homeostasis BP 0.000240182123708583 ATCAX3//ATKCO1//ATFER1//ATGLR3.2//ATIRT1//ATFER4 GO:0009736 cytokinin-activated signaling pathway BP 0.000300873454672073 ARR9//ARR5//ATIRT1//ATST4B//AT2G43670//ARR12//ARR8 GO:0071368 cellular response to cytokinin stimulus BP 0.000300873454672073 ARR9//ARR5//ATIRT1//ATST4B//AT2G43670//ARR12//ARR8 GO:0015698 inorganic anion transport BP 0.000323502385393181 ABS1//PHT4;5//AT5G64120//ATCLC-C//AT4G26010//AAT1//ATIRT1//AT1G17860//CYP87A2//AT1G69480//AT3G22600//AT3G22620//AT2G04800//UCC2 GO:0009735 response to cytokinin BP 0.000609780920101145 AT1G30260//ARR9//ARR5//ATIRT1//ATST4B//AT2G43670//ARR12//ARR8 GO:0006811 ion transport BP 0.00069223380202417 ABS1//PHT4;5//ATCAX3//AT5G25430//AT5G64120//ATKCO1//AT5G53110//AT5G52740//ATCLC-C//PRA1.A1//ATFER1//ATCNGC16//AT3G47070//LAZ1//AT4G26010//AAT1//ATIRT1//PIP1;4//AT1G17860//CYP87A2//AT1G69480//AT3G22600//AT3G22620//GAPB//BOR5//AT1G01910//AT1G65690//AT1G79520//AT2G04800//ATFER4//UCC2//AT2G23390 GO:0006820 anion transport BP 0.000904706191024941 ABS1//PHT4;5//AT5G25430//AT5G64120//AT5G53110//ATCLC-C//AT4G26010//AAT1//ATIRT1//AT1G17860//CYP87A2//AT1G69480//AT3G22600//AT3G22620//BOR5//AT1G01910//AT1G65690//AT2G04800//UCC2 GO:0046916 cellular transition metal ion homeostasi... BP 0.00130746945971729 ATCAX3//ATFER1//ATIRT1//ATFER4 GO:0015706 nitrate transport BP 0.0015819123921538 ABS1//PHT4;5//AT5G64120//AT4G26010//ATIRT1//AT1G17860//CYP87A2//AT3G22600//AT3G22620//AT2G04800//UCC2 GO:0055065 metal ion homeostasis BP 0.00188229694270239 ATCAX3//ATKCO1//ATFER1//ATGLR3.2//ATIRT1//ATFER4 GO:0010167 response to nitrate BP 0.00539299869683255 ABS1//AT5G64120//AT4G26010//ATIRT1//AT1G17860//CYP87A2//AT3G22600//AT3G22620//AT2G04800//UCC2 GO:0006826 iron ion transport BP 0.00599516777820826 ABS1//ATFER1//AT4G26010//ATIRT1//PIP1;4//CYP87A2//AT2G04800//ATFER4 GO:0007267 cell-cell signaling BP 0.00727211867210806 ESD6//ATMYB23//ATRALF1//EMB2776 GO:0030003 cellular cation homeostasis BP 0.00794331395570289 ATCAX3//ATKCO1//ATFER1//AT3G47070//ATGLR3.2//ATIRT1//ATFER4 GO:0098771 inorganic ion homeostasis BP 0.00807626568831294 ATCAX3//ATKCO1//ATFER1//ATGLR3.2//ATIRT1//ATFER4 GO:0015979 photosynthesis BP 0.0092664452041291 FTRA2//AT5G52960//AT5G45170//ATFER1//PPD6//AT3G47070//GAPB//NDF5//AT1G14345//APG2//AT2G28605//ATGLK1//ATFER4//SEP2//GDCH//AT2G37660 GO:0016579 protein deubiquitination BP 0.0106752965566337 ESD6//AXL//EMB2776 GO:0055076 transition metal ion homeostasis BP 0.0109331380575226 ATCAX3//ATFER1//ATIRT1//ATFER4 GO:0006873 cellular ion homeostasis BP 0.0112837393955236 ATCAX3//ATKCO1//ATFER1//AT3G47070//ATGLR3.2//ATIRT1//ATFER4 GO:0006913 nucleocytoplasmic transport BP 0.0128699677970236 AT4G16680//HY5//AT5G06120//AT4G26600//AT1G13730//AT2G28450//AT2G34357 GO:0051169 nuclear transport BP 0.0128699677970236 AT4G16680//HY5//AT5G06120//AT4G26600//AT1G13730//AT2G28450//AT2G34357 GO:0010114 response to red light BP 0.013082259199725 SPT//HY5//ARR5//AT3G47070//GAPB//ATRL2 GO:0044699 single-organism process BP 0.0133874193881143 ESD6//AT4G16680//AT4G15660//AT4G15810//ABS1//NDC1//AT1G26190//RAP2.11//FTRA2//PHT4;5//CEN2//SPT//ATCAX3//AT5G25430//CYP71B13//DG1//AT5G66740//STR18//CLE21//AT5G64120//AT5G63380//AT5G62840//FOLB2//AT5G62650//CDF1//AT5G60750//anac099//ATKCO1//AT5G52960//AT5G53110//AT5G52740//ATCLC-C//AT5G47435//AtNUDT11//ATCRA1//ARP9//AT5G42660//AT5G40500//ATMYB23//CYP716A2//ATPEN3//ATTTG1//SQP2//AtMYB43//ATMIXTA//AT5G11560//HY5//AHBP-1B//AT5G06120//MOP10//MLS//PRA1.A1//ATFER1//ATPRP3//ARR9//PPD6//AT3G55890//AT3G49320//ARR5//ATCNGC16//AT3G47070//ATSK2//LAZ1//ATGLR3.2//ALDH3//ATGPX7//AT4G30320//NZZ//AT4G26600//AT4G26010//ATFSD1//AT4G22460//AT4G22730//AAT1//ATIRT1//AT4G11210//AT4G05590//CRK37//PIP1;4//AT1G17860//HDG12//CYP87A2//AT1G19230//AT1G13730//AT1G13650//ATPSK1//AT1G69480//AT3G22210//AT3G22600//AT3G22620//CYP71B4//anac058//UGT84A2//AT3G22845//AT3G09580//AT3G10060//AT3G09160//CASP2//AT3G11560//AT3G05180//ATST4B//GAPB//NDF5//PIP5K2//AT1G29630//AT1G71500//BOR5//CYCA3;4//AT2G43670//KCS4//AT1G19450//AT1G07280//AT1G14345//AT1G63550//AT1G01910//AT1G32730//AtPERK11//GLYI7//ATRALF1//APG2//AT1G70770//emb1273//AT1G65690//AT1G79520//AOAT1//AtD27//SPS1//ATCPISCA//AIR3//AT2G28605//ATRL2//AT2G04800//ATSRX//ATGLK1//ATFER4//AGL3//APG9//AT1G09170//ARR12//GUX3//ANP1//ATCYCD1;1//AT1G22850//AT1G51160//AT2G28450//AT2G37240//AXL//AT2G41380//ARR8//GDCH//UCC2//PLIM2a//SNZ//AT2G34357//EMB2776//AT2G23390//AT2G37660//CYP76C1//ATZW10 GO:0055072 iron ion homeostasis BP 0.0152305311614529 ATFER1//ATIRT1//ATFER4 GO:0055082 cellular chemical homeostasis BP 0.0155413664767382 ATCAX3//ATKCO1//ATFER1//AT3G47070//ATGLR3.2//ATIRT1//ATFER4 GO:0048442 sepal development BP 0.0178583051366993 HDG12//AT1G32730//AGL3 GO:0048464 flower calyx development BP 0.0178583051366993 HDG12//AT1G32730//AGL3 GO:0071705 nitrogen compound transport BP 0.0181187235978609 ABS1//PHT4;5//AT5G64120//AT5G53110//HY5//AT4G26010//AAT1//ATIRT1//AT1G17860//CYP87A2//AT3G22600//AT3G22620//AT1G63550//AT1G65690//AT2G04800//UCC2//AT2G34357 GO:0009891 positive regulation of biosynthetic proc... BP 0.0192094067385708 ESD6//FTRA2//AT5G52960//ATTTG1//HY5//AHBP-1B//ARR5//AT4G05590//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0010876 lipid localization BP 0.0220258923540718 ESD6//PRA1.A1//AT4G22460//AT3G22600//AT3G22620//AXL//EMB2776 GO:0055080 cation homeostasis BP 0.023264684062171 ATCAX3//ATKCO1//ATFER1//AT3G47070//ATGLR3.2//ATIRT1//ATFER4 GO:0045165 cell fate commitment BP 0.0238228435544095 ATMYB23//ATTTG1//EMB2776 GO:0051179 localization BP 0.0256523090436025 ESD6//AT4G16680//AT4G15810//ABS1//PHT4;5//CEN2//ATCAX3//AT5G25430//AT5G64120//ATKCO1//AT5G53110//AT5G52740//ATCLC-C//ATTTG1//AT5G11560//HY5//AT5G06120//PRA1.A1//ATFER1//AT3G49320//ARR5//ATCNGC16//AT3G47070//LAZ1//ATGLR3.2//AT4G26600//AT4G26010//AT4G22460//AAT1//ATIRT1//AT4G05590//PIP1;4//AT1G17860//CYP87A2//AT1G13730//AT1G69480//AT3G22600//AT3G22620//AT3G22845//GAPB//BOR5//AT1G19450//AT1G12120//AT1G63550//AT1G01910//APG2//AT1G65690//AT1G79520//AOAT1//AT2G04800//ATGLK1//ATFER4//AT1G51160//AT2G28450//AXL//UCC2//AT2G34357//EMB2776//AT2G23390 GO:0045893 positive regulation of transcription, DN... BP 0.0260676982969161 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0051254 positive regulation of RNA metabolic pro... BP 0.0260676982969161 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:1902680 positive regulation of RNA biosynthetic ... BP 0.0260676982969161 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:1903508 positive regulation of nucleic acid-temp... BP 0.0260676982969161 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0009893 positive regulation of metabolic process BP 0.0279618365289156 ESD6//FTRA2//AT5G52960//ATTTG1//HY5//AHBP-1B//ARR5//AT4G05590//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//GDCH//EMB2776//AT2G23390 GO:0033554 cellular response to stress BP 0.0306000702600231 ABS1//CEN2//AT5G64120//AT5G52740//ATTTG1//AHBP-1B//ATPRP3//ARR5//ATBPM6//DER1//AT4G26010//ATFSD1//AAT1//ATIRT1//AT4G05590//CRK37//PIP1;4//AT1G17860//HDG12//CYP87A2//AT1G69480//AT3G10060//AT1G29630//AT1G70770//AT1G65690//AT2G04800//ATGLK1 GO:0010304 PSII associated light-harvesting complex... BP 0.0307338152562851 FOLB2//GAPB//FTSH8 GO:0006810 transport BP 0.0327871389421043 AT4G16680//AT4G15810//ABS1//PHT4;5//ATCAX3//AT5G25430//AT5G64120//ATKCO1//AT5G53110//AT5G52740//ATCLC-C//ATTTG1//AT5G11560//HY5//AT5G06120//PRA1.A1//ATFER1//AT3G49320//ARR5//ATCNGC16//AT3G47070//LAZ1//ATGLR3.2//AT4G26600//AT4G26010//AT4G22460//AAT1//ATIRT1//AT4G05590//PIP1;4//AT1G17860//CYP87A2//AT1G13730//AT1G69480//AT3G22600//AT3G22620//AT3G22845//GAPB//BOR5//AT1G19450//AT1G12120//AT1G63550//AT1G01910//AT1G65690//AT1G79520//AOAT1//AT2G04800//ATGLK1//ATFER4//AT1G51160//AT2G28450//UCC2//AT2G34357//AT2G23390 GO:0044765 single-organism transport BP 0.0335147306557917 AT4G16680//AT4G15810//ABS1//PHT4;5//ATCAX3//AT5G25430//AT5G64120//ATKCO1//AT5G53110//AT5G52740//ATCLC-C//ATTTG1//AT5G11560//AT5G06120//PRA1.A1//ATFER1//AT3G49320//ARR5//ATCNGC16//AT3G47070//LAZ1//AT4G26600//AT4G26010//AT4G22460//AAT1//ATIRT1//AT4G05590//PIP1;4//AT1G17860//CYP87A2//AT1G69480//AT3G22600//AT3G22620//GAPB//BOR5//AT1G19450//AT1G63550//AT1G01910//AT1G65690//AT1G79520//AOAT1//AT2G04800//ATGLK1//ATFER4//AT1G51160//AT2G28450//UCC2//AT2G34357//AT2G23390 GO:0006888 ER to Golgi vesicle-mediated transport BP 0.0335819199301775 AT5G11560//PRA1.A1//AAT1//AT1G51160 GO:0045935 positive regulation of nucleobase-contai... BP 0.0338105555617641 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0048878 chemical homeostasis BP 0.0342629269773812 ATCAX3//ATKCO1//ATFER1//AT3G47070//ATGLR3.2//ATIRT1//ATFER4//AXL GO:0010039 response to iron ion BP 0.0345416983134095 ATFER1//ATIRT1//ATFER4 GO:0045596 negative regulation of cell differentiat... BP 0.0345416983134095 HY5//HDG12//AGL3 GO:0051173 positive regulation of nitrogen compound... BP 0.0348828280870956 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0006606 protein import into nucleus BP 0.0355105812401479 AT4G16680//AT5G06120//AT4G26600//AT2G28450//AT2G34357 GO:0044744 protein targeting to nucleus BP 0.0355105812401479 AT4G16680//AT5G06120//AT4G26600//AT2G28450//AT2G34357 GO:1902593 single-organism nuclear import BP 0.0355105812401479 AT4G16680//AT5G06120//AT4G26600//AT2G28450//AT2G34357 GO:1902578 single-organism localization BP 0.0366939595988478 AT4G16680//AT4G15810//ABS1//PHT4;5//ATCAX3//AT5G25430//AT5G64120//ATKCO1//AT5G53110//AT5G52740//ATCLC-C//ATTTG1//AT5G11560//AT5G06120//PRA1.A1//ATFER1//AT3G49320//ARR5//ATCNGC16//AT3G47070//LAZ1//AT4G26600//AT4G26010//AT4G22460//AAT1//ATIRT1//AT4G05590//PIP1;4//AT1G17860//CYP87A2//AT1G69480//AT3G22600//AT3G22620//GAPB//BOR5//AT1G19450//AT1G63550//AT1G01910//AT1G65690//AT1G79520//AOAT1//AT2G04800//ATGLK1//ATFER4//AT1G51160//AT2G28450//UCC2//AT2G34357//AT2G23390 GO:0010628 positive regulation of gene expression BP 0.0370997889739572 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0006760 folic acid-containing compound metabolic... BP 0.037794324092421 FOLB2//AT5G47435 GO:0006874 cellular calcium ion homeostasis BP 0.037794324092421 ATCAX3//ATGLR3.2 GO:0055074 calcium ion homeostasis BP 0.037794324092421 ATCAX3//ATGLR3.2 GO:0034504 protein localization to nucleus BP 0.0378388049692831 AT4G16680//AT5G06120//AT4G26600//AT2G28450//AT2G34357 GO:0048528 post-embryonic root development BP 0.0378388049692831 RAP2.11//ATPRP3//ATIRT1//PIP5K2//AIR3 GO:0051170 nuclear import BP 0.0378388049692831 AT4G16680//AT5G06120//AT4G26600//AT2G28450//AT2G34357 GO:1990267 response to transition metal nanoparticl... BP 0.0378388049692831 ATFER1//ATFSD1//ATIRT1//JAL33//ATFER4 GO:0048441 petal development BP 0.0385817901400351 HDG12//AT1G32730//AGL3 GO:0048465 corolla development BP 0.0385817901400351 HDG12//AT1G32730//AGL3 GO:0010557 positive regulation of macromolecule bio... BP 0.0418300478077795 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0050801 ion homeostasis BP 0.0420162213055295 ATCAX3//ATKCO1//ATFER1//AT3G47070//ATGLR3.2//ATIRT1//ATFER4 GO:0007623 circadian rhythm BP 0.0423205346170189 SPT//HY5//ARR9//ARR5//ATFSD1//ARR8 GO:0010106 cellular response to iron ion starvation BP 0.0423205346170189 ABS1//AT4G26010//ATIRT1//PIP1;4//CYP87A2//AT2G04800 GO:0048511 rhythmic process BP 0.0423205346170189 SPT//HY5//ARR9//ARR5//ATFSD1//ARR8 GO:0000338 protein deneddylation BP 0.0428512907947524 ESD6//AXL//EMB2776 GO:0010388 cullin deneddylation BP 0.0428512907947524 ESD6//AXL//EMB2776 GO:0031537 regulation of anthocyanin metabolic proc... BP 0.0428512907947524 HY5//ARR12//ARR8 GO:0042558 pteridine-containing compound metabolic ... BP 0.0452486467535151 FOLB2//AT5G47435 GO:0010162 seed dormancy process BP 0.0453744697821785 ESD6//ATCRA1//ARR9//AXL//EMB2776 GO:0022611 dormancy process BP 0.0453744697821785 ESD6//ATCRA1//ARR9//AXL//EMB2776 GO:0009963 positive regulation of flavonoid biosynt... BP 0.0457422414165755 ATTTG1//HY5//ARR5//AT4G05590 GO:0051234 establishment of localization BP 0.0464069969395867 AT4G16680//AT4G15810//ABS1//PHT4;5//ATCAX3//AT5G25430//AT5G64120//ATKCO1//AT5G53110//AT5G52740//ATCLC-C//ATTTG1//AT5G11560//HY5//AT5G06120//PRA1.A1//ATFER1//AT3G49320//ARR5//ATCNGC16//AT3G47070//LAZ1//ATGLR3.2//AT4G26600//AT4G26010//AT4G22460//AAT1//ATIRT1//AT4G05590//PIP1;4//AT1G17860//CYP87A2//AT1G13730//AT1G69480//AT3G22600//AT3G22620//AT3G22845//GAPB//BOR5//AT1G19450//AT1G12120//AT1G63550//AT1G01910//APG2//AT1G65690//AT1G79520//AOAT1//AT2G04800//ATGLK1//ATFER4//AT1G51160//AT2G28450//UCC2//AT2G34357//AT2G23390 GO:0031328 positive regulation of cellular biosynth... BP 0.0469673976443665 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0048367 shoot system development BP 0.04697537249805 ESD6//AT1G26190//FTRA2//SPT//AT5G62840//HY5//ATFER1//PPD6//NZZ//HDG12//AT3G09580//AT3G09160//NDF5//AT1G32730//AtD27//AT2G28605//ATGLK1//ATFER4//AGL3//ARR12//ANP1//AXL//ARR8//EMB2776 GO:0048580 regulation of post-embryonic development BP 0.0470108385858505 ESD6//AT1G26190//SPT//ATKCO1//HY5//ATGLK1//ARR12//AXL//ARR8//EMB2776 GO:0000302 response to reactive oxygen species BP 0.0511393057389808 RAP2.11//SVR3//ATFER1//DER1//ATFSD1//ATIRT1//AT1G17860//ATFER4 GO:0043603 cellular amide metabolic process BP 0.052064671335872 FOLB2//AT5G47435//AT5G42660 GO:0010604 positive regulation of macromolecule met... BP 0.0525249891986821 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0009913 epidermal cell differentiation BP 0.0531912701806238 ATMYB23//ATTTG1 GO:0030855 epithelial cell differentiation BP 0.0531912701806238 ATMYB23//ATTTG1 GO:0031325 positive regulation of cellular metaboli... BP 0.0539814486825876 ESD6//FTRA2//AT5G52960//HY5//AHBP-1B//NDF5//APG2//AT2G28605//AT2G16365//ATGLK1//AXL//EMB2776 GO:0010035 response to inorganic substance BP 0.0549106762500858 ABS1//RAP2.11//ATCAX3//AT5G64120//ATMIXTA//ATFER1//ALDH3//DER1//AT4G26010//ATFSD1//ATIRT1//PIP1;4//AT1G17860//CYP87A2//AT3G22600//AT3G22620//AT3G10060//JAL33//GAPB//GLYI7//AT2G04800//ATFER4//AT2G41380//UCC2//AT2G39920 GO:0051093 negative regulation of developmental pro... BP 0.0567213336490555 SPT//HY5//HDG12//ATGLK1//AGL3 GO:0010380 regulation of chlorophyll biosynthetic p... BP 0.0615842045316438 ATGLK1//ARR12 GO:1901463 regulation of tetrapyrrole biosynthetic ... BP 0.0615842045316438 ATGLK1//ARR12 GO:0009908 flower development BP 0.062783255742797 ESD6//AT1G26190//SPT//HY5//ATFER1//NZZ//HDG12//AT3G09160//AT1G32730//ATGLK1//ATFER4//AGL3//ANP1//AXL//EMB2776 GO:0042744 hydrogen peroxide catabolic process BP 0.0639543974329049 NDC1//GAPB//AOAT1//ATCPISCA GO:0006979 response to oxidative stress BP 0.064945815801787 RAP2.11//SVR3//ATFER1//ATGPX7//DER1//AT4G26010//ATFSD1//ATIRT1//AT1G17860//ATSRX//ATFER4//ANP1 GO:0019915 lipid storage BP 0.0675069415949294 ESD6//AXL//EMB2776 GO:0070887 cellular response to chemical stimulus BP 0.0681112654807392 ESD6//ABS1//RAP2.11//AT5G64120//ATCRA1//HY5//AHBP-1B//ATPRP3//ARR9//ARR5//ATFSD1//ATIRT1//AT3G10060//ATST4B//AT2G43670//AT1G70770//ATGLK1//ARR12//AXL//ARR8//EMB2776 GO:0090567 reproductive shoot system development BP 0.068555459297722 ESD6//AT1G26190//SPT//HY5//ATFER1//NZZ//HDG12//AT3G09160//AT1G32730//ATGLK1//ATFER4//AGL3//ANP1//AXL//EMB2776 GO:0045736 negative regulation of cyclin-dependent ... BP 0.0703913550260751 CYCA3;4//ATCYCD1;1 GO:0071248 cellular response to metal ion BP 0.0703913550260751 RAP2.11//ATIRT1 GO:0046283 anthocyanin-containing compound metaboli... BP 0.0721579239513654 HY5//UGT84A2//ARR12//ARR8 GO:0050826 response to freezing BP 0.0730673033628962 ESD6//AXL//EMB2776 GO:0000041 transition metal ion transport BP 0.0750502585925495 ABS1//ATFER1//AT4G26010//ATIRT1//PIP1;4//CYP87A2//AT2G04800//ATFER4 GO:0009845 seed germination BP 0.0762535227611048 ESD6//SPT//ATKCO1//AXL//ARR8//EMB2776