GOID TERM ONTOLOGY pValue Genes GO:0009809 lignin biosynthetic process BP 0.000581229556419254 ATLAC17//AT1G76470//AT1G33030//AT1G51990//ATLMCO4 GO:0009808 lignin metabolic process BP 0.00392087034410627 ATLAC17//AT1G76470//AT1G33030//AT1G51990//ATLMCO4 GO:0009699 phenylpropanoid biosynthetic process BP 0.00589226665730799 ATLAC17//ATMYB4//AT1G76470//AT1G33030//AT1G51990//ATLMCO4 GO:0009926 auxin polar transport BP 0.0101161648825834 GLV3//ATMT3//AT1G76520//ATCCD7 GO:0046351 disaccharide biosynthetic process BP 0.0110805974052387 ATSUS2//ATTPS6//ATTPS8 GO:0046916 cellular transition metal ion homeostasi... BP 0.0110805974052387 AtTMN7//ATMT3//ACA7 GO:0060918 auxin transport BP 0.0120964280104542 GLV3//ATMT3//AT1G76520//ATCCD7 GO:0098771 inorganic ion homeostasis BP 0.0126163630912017 AtTMN7//ATMT3//ATCHX19//AtG3Pp3//ACA7 GO:0044262 cellular carbohydrate metabolic process BP 0.0130524423874578 XTH30//ATLAC17//ATSUS2//c-NAD-MDH2//AT5G03980//ATPHS2//XTH29//QQS//AT3G14205//AtCASP//AT1G76400//AtIDD14//ATTPS6//AT2G31930//ATTPS8//ATLMCO4 GO:0009914 hormone transport BP 0.0131732236585249 GLV3//ATMT3//AT1G76520//ATCCD7 GO:0044550 secondary metabolite biosynthetic proces... BP 0.0192513119345512 ATMKK9//ATLAC17//ATMYB4//AT1G76470//NRT1.7//AT1G33030//AT1G51990//ATLMCO4 GO:0072525 pyridine-containing compound biosyntheti... BP 0.0201325292366059 A37//QPT GO:0006457 protein folding BP 0.020438587588719 AT5G06410//ATERDJ3B//ATFKBP53//Hop3//AT3G14200//A37//AT1G52560//AT2G36130//AT2G33735 GO:0009312 oligosaccharide biosynthetic process BP 0.0220831140404042 ATSUS2//ATTPS6//ATTPS8 GO:0055069 zinc ion homeostasis BP 0.0242458962048852 AtTMN7//ACA7 GO:0046685 response to arsenic-containing substance BP 0.0243320352622362 EXL2//AT5G05880//AT4G33540 GO:0055076 transition metal ion homeostasis BP 0.0291867990137632 AtTMN7//ATMT3//ACA7 GO:0034637 cellular carbohydrate biosynthetic proce... BP 0.029980776553084 ATLAC17//ATSUS2//AT5G03980//ATPHS2//QQS//AtCASP//AT1G76400//ATTPS6//AT2G31930//ATTPS8//ATLMCO4 GO:0009698 phenylpropanoid metabolic process BP 0.0322213548977273 ATLAC17//ATMYB4//AT1G76470//AT1G33030//AT1G51990//ATLMCO4 GO:0043455 regulation of secondary metabolic proces... BP 0.0333876824105526 ATMYB4//FUS3 GO:0080092 regulation of pollen tube growth BP 0.0333876824105526 ATROPGEF9//PRK4 GO:0048868 pollen tube development BP 0.0348958782157135 AT5G04390//ATGRP19//ATROPGEF9//PRK4//CRM1B//POD1//AT1G51410//AT1G43630 GO:0008284 positive regulation of cell proliferatio... BP 0.0373541080032033 GLV3//FUS3//AT1G16210 GO:0005992 trehalose biosynthetic process BP 0.0383848221117051 ATTPS6//ATTPS8 GO:0010769 regulation of cell morphogenesis involve... BP 0.0383848221117051 ATROPGEF9//PRK4 GO:0046271 phenylpropanoid catabolic process BP 0.0383848221117051 ATLAC17//ATLMCO4 GO:0046274 lignin catabolic process BP 0.0383848221117051 ATLAC17//ATLMCO4 GO:0060284 regulation of cell development BP 0.0383848221117051 ATROPGEF9//PRK4 GO:0009856 pollination BP 0.0409643159584633 AT5G04390//ATGRP19//ATROPGEF9//PRK4//ATPAP15//CRM1B//POD1//AT1G51410//AT1G43630 GO:0044706 multi-multicellular organism process BP 0.0409643159584633 AT5G04390//ATGRP19//ATROPGEF9//PRK4//ATPAP15//CRM1B//POD1//AT1G51410//AT1G43630 GO:0005991 trehalose metabolic process BP 0.049157448662711 ATTPS6//ATTPS8 GO:0006875 cellular metal ion homeostasis BP 0.0498592113389974 AtTMN7//ATMT3//ACA7 GO:0071103 DNA conformation change BP 0.0498592113389974 ATFKBP53//AT1G54260//AT2G13720 GO:0007167 enzyme linked receptor protein signaling... BP 0.0530617961262391 AT3G46370//PRK4//AT3G24240//AT2G16250 GO:0007169 transmembrane receptor protein tyrosine ... BP 0.0530617961262391 AT3G46370//PRK4//AT3G24240//AT2G16250 GO:0032989 cellular component morphogenesis BP 0.0586720383994334 AT5G04390//AT2353//ATGRP19//VEL1//ATROPGEF9//ASAR1//ATELC//PRK4//CRM1B//LNG2//CCRL6//AT1G43630//ELF3 GO:0006073 cellular glucan metabolic process BP 0.058973670209322 XTH30//ATSUS2//ATPHS2//XTH29//QQS//AtCASP//AT1G76400//AtIDD14 GO:0044042 glucan metabolic process BP 0.058973670209322 XTH30//ATSUS2//ATPHS2//XTH29//QQS//AtCASP//AT1G76400//AtIDD14 GO:0022603 regulation of anatomical structure morph... BP 0.0610057932083281 KAPP//ATROPGEF9//PRK4//LNG2 GO:0000902 cell morphogenesis BP 0.0633136354309352 AT5G04390//AT2353//ATGRP19//VEL1//ATROPGEF9//ASAR1//ATELC//PRK4//CRM1B//LNG2//AT1G43630//ELF3 GO:0010150 leaf senescence BP 0.0641333174675961 ANAC092//AtWRKY22//COR15B GO:0009688 abscisic acid biosynthetic process BP 0.0670551618294337 FUS3//AT1G23450 GO:0016106 sesquiterpenoid biosynthetic process BP 0.0670551618294337 FUS3//AT1G23450 GO:0043289 apocarotenoid biosynthetic process BP 0.0670551618294337 FUS3//AT1G23450 GO:0072503 cellular divalent inorganic cation homeo... BP 0.0670551618294337 AtTMN7//ACA7 GO:1902645 tertiary alcohol biosynthetic process BP 0.0670551618294337 FUS3//AT1G23450 GO:0009873 ethylene-activated signaling pathway BP 0.0674550828892182 ATERF-1//ATMKK9//ANAC092//AtMYB32//ATERF15 GO:0044264 cellular polysaccharide metabolic proces... BP 0.0735277819158767 XTH30//ATLAC17//ATSUS2//ATPHS2//XTH29//QQS//AtCASP//AT1G76400//AtIDD14//AT2G31930//ATLMCO4 GO:0030048 actin filament-based movement BP 0.0759349263265232 ATPLC1//PRK4//AT1G43630 GO:0005975 carbohydrate metabolic process BP 0.0786399758364604 XTH30//AT5G20870//ATLAC17//AT5G58090//ATSUS2//PFK2//c-NAD-MDH2//AT5G03980//AtFBA4//ATPHS2//AT4G35670//AT4G26830//ATUGE2//XTH29//ASAR1//QQS//AT3G14205//AT3G26140//AtCASP//CRM1B//AT1G76400//AtIDD14//ATTPS6//EMB2763//AT2G31930//ATTPS8//ATLMCO4 GO:0005982 starch metabolic process BP 0.0786622039889751 ATSUS2//ATPHS2//QQS//AtIDD14 GO:0050801 ion homeostasis BP 0.0798652381536069 AtTMN7//ATMT3//ATCHX19//AtG3Pp3//ACA7 GO:0009608 response to symbiont BP 0.079996301351106 ATVOZ1//AT1G16210 GO:0009610 response to symbiotic fungus BP 0.079996301351106 ATVOZ1//AT1G16210 GO:0010374 stomatal complex development BP 0.0818282769258695 AT3G57370//CAK1AT//AT3G24240//AT2G16250 GO:0009687 abscisic acid metabolic process BP 0.0867338663824744 FUS3//AT1G23450 GO:0043288 apocarotenoid metabolic process BP 0.0867338663824744 FUS3//AT1G23450 GO:1901264 carbohydrate derivative transport BP 0.0867338663824744 AtG3Pp3//ATENT7 GO:1902644 tertiary alcohol metabolic process BP 0.0867338663824744 FUS3//AT1G23450 GO:0042127 regulation of cell proliferation BP 0.0886170139096112 GLV3//FUS3//AT1G16210 GO:0071369 cellular response to ethylene stimulus BP 0.0906133738492875 ATERF-1//ATMKK9//ANAC092//AtMYB32//ATERF15 GO:0000904 cell morphogenesis involved in different... BP 0.0915831370052077 AT5G04390//ATGRP19//VEL1//ATROPGEF9//ATELC//PRK4//CRM1B//AT1G43630 GO:0001510 RNA methylation BP 0.0930300881441907 HD2C//ATFKBP53//AT2G47790 GO:0006334 nucleosome assembly BP 0.0936345187908662 ATFKBP53//AT1G54260 GO:0006714 sesquiterpenoid metabolic process BP 0.0936345187908662 FUS3//AT1G23450 GO:0034728 nucleosome organization BP 0.0936345187908662 ATFKBP53//AT1G54260 GO:0009846 pollen germination BP 0.100687587682284 ATPAP15//CRM1B GO:0072507 divalent inorganic cation homeostasis BP 0.100687587682284 AtTMN7//ACA7 GO:0007166 cell surface receptor signaling pathway BP 0.102105148206976 AT3G46370//PRK4//AT3G24240//AT2G16250 GO:0051510 regulation of unidimensional cell growth BP 0.10212139524033 ATROPGEF9//PRK4//LNG2 GO:0048573 photoperiodism, flowering BP 0.10569085792793 VEL1//AT1G73660//ATVOZ1//ELF3 GO:0009860 pollen tube growth BP 0.106154468187896 AT5G04390//ATGRP19//ATROPGEF9//PRK4//CRM1B//AT1G43630 GO:0055065 metal ion homeostasis BP 0.10679503448576 AtTMN7//ATMT3//ACA7 GO:0010440 stomatal lineage progression BP 0.107882796000721 AT3G57370//CAK1AT GO:0065004 protein-DNA complex assembly BP 0.107882796000721 ATFKBP53//AT1G54260 GO:0071824 protein-DNA complex subunit organization BP 0.107882796000721 ATFKBP53//AT1G54260 GO:0009826 unidimensional cell growth BP 0.109402055728709 AT5G04390//AT2353//ATGRP19//ATROPGEF9//PRK4//CRM1B//LNG2//AT1G43630//ELF3 GO:0017038 protein import BP 0.111115945612548 IMPA-5//OLE1//AtIDD11//CRM1B//AT1G21610 GO:0022604 regulation of cell morphogenesis BP 0.111550888465475 ATROPGEF9//PRK4//LNG2 GO:0009816 defense response to bacterium, incompati... BP 0.115210248336534 PBS1//RPS5 GO:0031497 chromatin assembly BP 0.115210248336534 ATFKBP53//AT1G54260 GO:0032880 regulation of protein localization BP 0.115210248336534 GLV3//POD1 GO:0009648 photoperiodism BP 0.116784619228721 VEL1//AT1G73660//ATVOZ1//ELF3 GO:0000160 phosphorelay signal transduction system BP 0.117354974036115 ATERF-1//ATMKK9//ANAC092//AtMYB32//ATERF15 GO:0048584 positive regulation of response to stimu... BP 0.121299781264161 SNRK2-3//ATERDJ3B//ATVOZ1 GO:0033365 protein localization to organelle BP 0.123425786562899 IMPA-5//OLE1//ASAR1//AtIDD11//CRM1B//POD1//AT1G21610//AT1G16210 GO:0006323 DNA packaging BP 0.130224140912377 ATFKBP53//AT1G54260 GO:0006606 protein import into nucleus BP 0.131348997615446 IMPA-5//OLE1//CRM1B GO:0044744 protein targeting to nucleus BP 0.131348997615446 IMPA-5//OLE1//CRM1B GO:1902593 single-organism nuclear import BP 0.131348997615446 IMPA-5//OLE1//CRM1B GO:0001558 regulation of cell growth BP 0.136480216120421 ATROPGEF9//PRK4//LNG2 GO:0072524 pyridine-containing compound metabolic p... BP 0.136480216120421 AtFBA4//A37//QPT GO:0005976 polysaccharide metabolic process BP 0.136812863553445 XTH30//ATLAC17//ATSUS2//ATPHS2//XTH29//QQS//AtCASP//AT1G76400//AtIDD14//AT2G31930//ATLMCO4 GO:0048878 chemical homeostasis BP 0.137034148963294 AtTMN7//ATMT3//ATCHX19//AtG3Pp3//ACA7 GO:0034504 protein localization to nucleus BP 0.14167929047608 IMPA-5//OLE1//CRM1B GO:0051170 nuclear import BP 0.14167929047608 IMPA-5//OLE1//CRM1B GO:0055080 cation homeostasis BP 0.144512627857505 AtTMN7//ATMT3//ATCHX19//ACA7 GO:0010260 organ senescence BP 0.152271347937231 ANAC092//AtWRKY22//COR15B GO:0007031 peroxisome organization BP 0.157659509238112 AtIDD11//PEX11C//AT1G21610 GO:0009108 coenzyme biosynthetic process BP 0.157659509238112 AtPPT1//A37//QPT