GOID TERM ONTOLOGY pValue Genes GO:0019725 cellular homeostasis BP 0.0014722491768996 AtbZIP63//WCRKC1//VHA-A3//CCL//CDI3//ABCG36 GO:0048878 chemical homeostasis BP 0.00177557151389179 AtbZIP63//VHA-A3//ACO1//CCL//CDI3//ABCG36 GO:0055082 cellular chemical homeostasis BP 0.00218899868883684 AtbZIP63//VHA-A3//CCL//CDI3//ABCG36 GO:0016049 cell growth BP 0.00228292260918719 ATPA//ELF6//CYCA2;1//AtNMNAT//SEC15A//VHA-A3//AT3G02810//PDF1//TTL3//ZIP3 GO:0007033 vacuole organization BP 0.00260070267346769 VHA-A3//ACO1//delta-ADR GO:0015985 energy coupled proton transport, down el... BP 0.00363839213587514 ATPA//VHA-A3 GO:0015986 ATP synthesis coupled proton transport BP 0.00363839213587514 ATPA//VHA-A3 GO:0042592 homeostatic process BP 0.00368644611108369 AtbZIP63//WCRKC1//VHA-A3//ACO1//CCL//CDI3//ABCG36 GO:0050801 ion homeostasis BP 0.00484181983311456 VHA-A3//ACO1//CCL//CDI3//ABCG36 GO:0048506 regulation of timing of meristematic pha... BP 0.00619385273799462 AGL24//SPL10 GO:0048510 regulation of timing of transition from ... BP 0.00619385273799462 AGL24//SPL10 GO:0006873 cellular ion homeostasis BP 0.0107211184483006 VHA-A3//CCL//CDI3//ABCG36 GO:1902600 hydrogen ion transmembrane transport BP 0.0130993515834899 ATPA//VHA-A3 GO:0030001 metal ion transport BP 0.0151161377496652 HIPP27//VHA-A3//AT2G28090//CCL//ABCG36//ZIP3//GIK GO:0034220 ion transmembrane transport BP 0.0156453533145469 ATPA//VHA-A3//ZIP3//GIK GO:0040034 regulation of development, heterochronic BP 0.015895835283437 AGL24//SPL10 GO:0040007 growth BP 0.0167044187056796 ATPA//ELF6//CYCA2;1//AtNMNAT//SEC15A//VHA-A3//AT3G02810//PDF1//TTL3//ZIP3 GO:0000902 cell morphogenesis BP 0.0169541239653293 ELF6//CYCA2;1//AtNMNAT//ADL1//SEC15A//VHA-A3//AT3G02810//PDF1 GO:0055080 cation homeostasis BP 0.0182862039826019 VHA-A3//ACO1//CCL//ABCG36 GO:0043687 post-translational protein modification BP 0.0187801365302589 ELF6//SRFR1//PKDM7D GO:0016192 vesicle-mediated transport BP 0.0226300900794357 AT5G43670//ADL1//SEC15A//VHA-A3//delta-ADR//AtSEC24A//PDF1 GO:0032989 cellular component morphogenesis BP 0.0233827766160606 ELF6//CYCA2;1//AtNMNAT//ADL1//SEC15A//VHA-A3//AT3G02810//PDF1 GO:0009653 anatomical structure morphogenesis BP 0.0235512877124593 ELF6//CYCA2;1//AtNMNAT//ADL1//SEC15A//AGP3//VHA-A3//AT3G02810//AT3G09580//LRS1//PDF1//AT1G50270//AT2G16250//SPL10//ZIP3 GO:0009741 response to brassinosteroid BP 0.024032186684602 ELF6//TTL3//GIK GO:0098655 cation transmembrane transport BP 0.024032186684602 ATPA//VHA-A3//ZIP3 GO:0098662 inorganic cation transmembrane transport BP 0.024032186684602 ATPA//VHA-A3//ZIP3 GO:0070838 divalent metal ion transport BP 0.0250282934201723 VHA-A3//CCL//ABCG36//ZIP3 GO:0072511 divalent inorganic cation transport BP 0.0250282934201723 VHA-A3//CCL//ABCG36//ZIP3 GO:0045893 positive regulation of transcription, DN... BP 0.0258184506233569 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0051254 positive regulation of RNA metabolic pro... BP 0.0258184506233569 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:1902680 positive regulation of RNA biosynthetic ... BP 0.0258184506233569 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:1903508 positive regulation of nucleic acid-temp... BP 0.0258184506233569 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0098660 inorganic ion transmembrane transport BP 0.0259419248477111 ATPA//VHA-A3//ZIP3 GO:0048193 Golgi vesicle transport BP 0.0260861698462865 AT5G43670//VHA-A3//delta-ADR//AtSEC24A//PDF1 GO:0042743 hydrogen peroxide metabolic process BP 0.0266335690004614 AT5G16280//emb2726//ABA4//ABCG36//PKDM7D GO:0045935 positive regulation of nucleobase-contai... BP 0.0281462881104368 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0051173 positive regulation of nitrogen compound... BP 0.029115239463792 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0010628 positive regulation of gene expression BP 0.0296079059489024 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0009891 positive regulation of biosynthetic proc... BP 0.0301816681810083 ELF6//SRFR1//AGL24//ATSWI3C//ABCG36//SPL10//PKDM7D GO:0006754 ATP biosynthetic process BP 0.0312097994511179 ATPA//VHA-A3 GO:0052386 cell wall thickening BP 0.0312097994511179 ATGSL01//ABCG36 GO:0052543 callose deposition in cell wall BP 0.0312097994511179 ATGSL01//ABCG36 GO:0006487 protein N-linked glycosylation BP 0.0321469043706979 AT5G15680//AtSEC24A//LRS1 GO:0010557 positive regulation of macromolecule bio... BP 0.0321539756372038 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0006812 cation transport BP 0.0325972221636729 ATPA//HIPP27//VHA-A3//AT2G28090//CCL//ABCG36//ZIP3//GIK GO:0009145 purine nucleoside triphosphate biosynthe... BP 0.0331649404842953 ATPA//VHA-A3 GO:0009201 ribonucleoside triphosphate biosynthetic... BP 0.0331649404842953 ATPA//VHA-A3 GO:0009206 purine ribonucleoside triphosphate biosy... BP 0.0331649404842953 ATPA//VHA-A3 GO:0031328 positive regulation of cellular biosynth... BP 0.034291297869991 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0009142 nucleoside triphosphate biosynthetic pro... BP 0.035166921821156 ATPA//VHA-A3 GO:0010604 positive regulation of macromolecule met... BP 0.0365192041851894 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0055076 transition metal ion homeostasis BP 0.0372147303755515 VHA-A3//ACO1 GO:0048869 cellular developmental process BP 0.0377639122979211 ELF6//CYCA2;1//AtNMNAT//ADL1//SEC15A//AGP3//VHA-A3//AGL24//ATGSL01//AT3G02810//PDF1//ZIP3 GO:0072593 reactive oxygen species metabolic proces... BP 0.039860529137802 AT5G16280//emb2726//ABA4//ABCG36//PKDM7D GO:0031325 positive regulation of cellular metaboli... BP 0.0406392194375974 ELF6//SRFR1//AGL24//ATSWI3C//SPL10//PKDM7D GO:0042325 regulation of phosphorylation BP 0.0414438483650786 CYCA2;1//PDF1 GO:0009832 plant-type cell wall biogenesis BP 0.0415184756652927 ATPA//ADL1//TTL3 GO:0048522 positive regulation of cellular process BP 0.0420623648625242 ELF6//SRFR1//AGL24//AtSEC24A//AT1G50270//ATSWI3C//SPL10//PKDM7D GO:0071365 cellular response to auxin stimulus BP 0.0458444736373349 ABCG36//TTL3 GO:0030003 cellular cation homeostasis BP 0.0480002745998707 VHA-A3//CCL//ABCG36 GO:0042744 hydrogen peroxide catabolic process BP 0.0481067181751154 emb2726//ABA4 GO:0031323 regulation of cellular metabolic process BP 0.0504076620742939 ELF6//AtbZIP63//CYCA2;1//AT5G18230//SRFR1//AGL24//ABA4//AT3G04450//PDF1//ATHB18//ATSWI3C//ABCG36//EMB1135//SPL10//PKDM7D//AT2G17930//ANAC034//GIK GO:0006486 protein glycosylation BP 0.0522965804556731 AT5G15680//AtSEC24A//LRS1//PKDM7D GO:0009101 glycoprotein biosynthetic process BP 0.0522965804556731 AT5G15680//AtSEC24A//LRS1//PKDM7D GO:0043413 macromolecule glycosylation BP 0.0522965804556731 AT5G15680//AtSEC24A//LRS1//PKDM7D GO:0009127 purine nucleoside monophosphate biosynth... BP 0.0527504231064257 ATPA//VHA-A3 GO:0009168 purine ribonucleoside monophosphate bios... BP 0.0527504231064257 ATPA//VHA-A3 GO:0070085 glycosylation BP 0.0543856587854178 AT5G15680//AtSEC24A//LRS1//PKDM7D GO:0009100 glycoprotein metabolic process BP 0.0554470893117467 AT5G15680//AtSEC24A//LRS1//PKDM7D GO:0060560 developmental growth involved in morphog... BP 0.0569589019991597 ELF6//CYCA2;1//AtNMNAT//SEC15A//AT3G02810//ZIP3 GO:0033993 response to lipid BP 0.0570613716391547 ELF6//AtbZIP63//AGL24//CDI3//ABCG36//TTL3//GIK GO:0046034 ATP metabolic process BP 0.057547040081894 ATPA//VHA-A3 GO:0051273 beta-glucan metabolic process BP 0.059338747107344 ATPA//ATGSL01//TTL3 GO:0009144 purine nucleoside triphosphate metabolic... BP 0.0600004734756589 ATPA//VHA-A3 GO:0009199 ribonucleoside triphosphate metabolic pr... BP 0.0600004734756589 ATPA//VHA-A3 GO:0009205 purine ribonucleoside triphosphate metab... BP 0.0600004734756589 ATPA//VHA-A3 GO:0044767 single-organism developmental process BP 0.0614961137888519 ELF6//AT5G16280//CYCA2;1//AtNMNAT//ADL1//SEC15A//AGP3//VHA-A3//emb2726//AGL24//ATGSL01//AT3G02810//AT3G09580//LRS1//PDF1//AT1G50270//TTL3//AT2G16250//EMB1135//SPL10//PKDM7D//AT2G17930//ANAC034//ZIP3//GIK GO:0009141 nucleoside triphosphate metabolic proces... BP 0.0624894999311516 ATPA//VHA-A3 GO:0009156 ribonucleoside monophosphate biosyntheti... BP 0.0624894999311516 ATPA//VHA-A3 GO:0048468 cell development BP 0.0625324823986574 AtNMNAT//ADL1//SEC15A//AGP3//AGL24//AT3G02810//ZIP3 GO:0009893 positive regulation of metabolic process BP 0.0632384079587889 ELF6//SRFR1//AGL24//ATSWI3C//ABCG36//SPL10//PKDM7D GO:0044707 single-multicellular organism process BP 0.0647818094381876 ELF6//AT5G16280//CYCA2;1//AtNMNAT//ADL1//SEC15A//AGP3//emb2726//AGL24//ATGSL01//AT3G09580//LRS1//CDI3//AT1G50270//TTL3//AT2G16250//EMB1135//SPL10//PKDM7D//AT2G17930//ANAC034//ZIP3//GIK GO:0009826 unidimensional cell growth BP 0.0666185125968888 ELF6//CYCA2;1//AtNMNAT//SEC15A//AT3G02810 GO:0000041 transition metal ion transport BP 0.0670091739605012 ABCG36//ZIP3//GIK GO:0009124 nucleoside monophosphate biosynthetic pr... BP 0.0675709366542928 ATPA//VHA-A3 GO:0042451 purine nucleoside biosynthetic process BP 0.0675709366542928 ATPA//VHA-A3 GO:0046129 purine ribonucleoside biosynthetic proce... BP 0.0675709366542928 ATPA//VHA-A3 GO:0032501 multicellular organismal process BP 0.0702168803006743 ELF6//AT5G16280//CYCA2;1//AtNMNAT//ADL1//SEC15A//AGP3//emb2726//AGL24//ATGSL01//AT3G02810//AT3G09580//LRS1//CDI3//AT1G50270//TTL3//AT2G16250//EMB1135//SPL10//PKDM7D//AT2G17930//ANAC034//ZIP3//GIK GO:0009163 nucleoside biosynthetic process BP 0.0727846824810123 ATPA//VHA-A3 GO:0042455 ribonucleoside biosynthetic process BP 0.0727846824810123 ATPA//VHA-A3 GO:0032502 developmental process BP 0.0748178787725277 ELF6//AT5G16280//CYCA2;1//AtNMNAT//ADL1//SEC15A//AGP3//VHA-A3//emb2726//AGL24//ATGSL01//AT3G02810//AT3G09580//LRS1//PDF1//AT1G50270//TTL3//AT2G16250//EMB1135//SPL10//PKDM7D//AT2G17930//ANAC034//ZIP3//GIK GO:0009152 purine ribonucleotide biosynthetic proce... BP 0.0754391406422684 ATPA//VHA-A3 GO:0045892 negative regulation of transcription, DN... BP 0.0776827824720343 AT5G18230//SRFR1//ATSWI3C//AT2G17930//GIK GO:0051253 negative regulation of RNA metabolic pro... BP 0.0776827824720343 AT5G18230//SRFR1//ATSWI3C//AT2G17930//GIK GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0776827824720343 AT5G18230//SRFR1//ATSWI3C//AT2G17930//GIK GO:1903507 negative regulation of nucleic acid-temp... BP 0.0776827824720343 AT5G18230//SRFR1//ATSWI3C//AT2G17930//GIK GO:0010256 endomembrane system organization BP 0.0784680157385279 VHA-A3//ACO1//delta-ADR GO:0006811 ion transport BP 0.0815998771235445 ATPA//HIPP27//VHA-A3//AT2G28090//CCL//CDI3//ABCG36//ZIP3//GIK GO:0010558 negative regulation of macromolecule bio... BP 0.0830234745279105 AT5G18230//SRFR1//ATSWI3C//AT2G17930//GIK GO:0045934 negative regulation of nucleobase-contai... BP 0.0830234745279105 AT5G18230//SRFR1//ATSWI3C//AT2G17930//GIK