GOID	TERM	ONTOLOGY	pValue	Genes
GO:0006275	regulation of DNA replication	BP	0.00173071619567593	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//MAP65-2//ATMSH2//ATPOT1//ATCDT1A
GO:0006261	DNA-dependent DNA replication	BP	0.00473581069175911	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//ATMSH2//AT1G34770//ATORC6//ATCDT1A
GO:0006270	DNA replication initiation	BP	0.00519705050035514	ORTH2//AtTOP3alpha//ATCAP-C//ATMSH2//ATCDT1A
GO:0006342	chromatin silencing	BP	0.00683495586957877	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0010564	regulation of cell cycle process	BP	0.00696458510473898	ATCAP-C//CCS52B//MAP65-2//EDA8//ATMSH2//RST1//ATCDT1A
GO:0045814	negative regulation of gene expression, ...	BP	0.00713675437208444	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0051052	regulation of DNA metabolic process	BP	0.010711736034437	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//MAP65-2//ATMSH2//ATPOT1//ATCDT1A
GO:0043414	macromolecule methylation	BP	0.0147213718854057	ORTH2//AT5G15070//AT5G15550//AtTOP3alpha//AT5G64150//ATCAP-C//CCS52B//AT5G06550//ANT//MAP65-2//YAO//ATMSH2//AT1G30550//ATCDT1A
GO:0006479	protein methylation	BP	0.0151614401930783	ORTH2//AT5G15070//AtTOP3alpha//AT5G64150//ATCAP-C//CCS52B//AT5G06550//MAP65-2//ATMSH2//ATCDT1A
GO:0008213	protein alkylation	BP	0.0151614401930783	ORTH2//AT5G15070//AtTOP3alpha//AT5G64150//ATCAP-C//CCS52B//AT5G06550//MAP65-2//ATMSH2//ATCDT1A
GO:0042542	response to hydrogen peroxide	BP	0.015768940107865	AT5G18420//LPPepsilon1//ATMEK1//GEK1//AT2G29500
GO:0032259	methylation	BP	0.0170769305660034	ORTH2//AT5G15070//AT5G15550//AtTOP3alpha//AT5G64150//ATCAP-C//CCS52B//AT5G06550//ANT//MAP65-2//YAO//ATMSH2//AT1G30550//ATCDT1A
GO:0006508	proteolysis	BP	0.0173970595429424	AT5G26830//AT5G59130//UBP21//AT5G42620//AT5G22860//CCS52B//VFB2//CEP3//SGT1A//AT1G66660//AT1G66620//DDI1//AT3G15710//AT1G50380//ATSKP2;2
GO:0009266	response to temperature stimulus	BP	0.0188010304291184	AT1G51090//AT3G57570//LPPepsilon1//ATMEK1//ATCTC1//ATMSRB3//AT4G02550//EDA8//RST1//AT1G50380//ATFBP7//ATSKP2;2//AT2G29500//BAM7
GO:0010286	heat acclimation	BP	0.0191643185563052	AT4G02550//ATSKP2;2//AT2G29500
GO:0048831	regulation of shoot system development	BP	0.020126484242101	ATCAP-C//BAM8//AT5G06550//MAP65-2//EDA8//ATFYPP3//ATMSH2//RST1//ATCDT1A//BAM7
GO:0006260	DNA replication	BP	0.0207439368437866	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//MAP65-2//ATMSH2//AT1G34770//ATPOT1//ATORC6//ATCDT1A
GO:0051726	regulation of cell cycle	BP	0.0211701668537875	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//MAP65-2//EDA8//ATMSH2//RST1//ATCDT1A
GO:0010048	vernalization response	BP	0.0226513619033449	AT3G57570//ATCTC1//AT1G50380//BAM7
GO:0016458	gene silencing	BP	0.0247433337854867	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//MAP65-2//ATMSH2//AT1G76630//ATCDT1A
GO:0006346	methylation-dependent chromatin silencin...	BP	0.0263560100395643	ORTH2//ATCAP-C//ANT//ATMSH2//AT1G76630
GO:0071103	DNA conformation change	BP	0.0277402497187565	ORTH2//AtTOP3alpha//ATMSH2//HIS4
GO:0008283	cell proliferation	BP	0.0296392504932616	ORTH2//ATCAP-C//CCS52B//HAC11//ATPSK3//ANT//MAP65-2//ATMSH2
GO:0016571	histone methylation	BP	0.0325275650163133	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//AT5G06550//MAP65-2//ATMSH2//ATCDT1A
GO:0045892	negative regulation of transcription, DN...	BP	0.0325275650163133	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0051253	negative regulation of RNA metabolic pro...	BP	0.0325275650163133	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:1902679	negative regulation of RNA biosynthetic ...	BP	0.0325275650163133	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:1903507	negative regulation of nucleic acid-temp...	BP	0.0325275650163133	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0051567	histone H3-K9 methylation	BP	0.0328356415116837	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//ATMSH2//ATCDT1A
GO:0061647	histone H3-K9 modification	BP	0.0328356415116837	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//ATMSH2//ATCDT1A
GO:0044271	cellular nitrogen compound biosynthetic ...	BP	0.0343769199654456	ORTH2//AT5G67000//AtTOP3alpha//AT5G64150//SRT1//ATCAP-C//AT5G47435//UBP21//NRPC2//TSBtype2//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//AT3G57010//ANT//AT4G27240//ATMEK1//YAO//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//AT1G42440//CuAO1//AT1G28530//AT1G75670//ATCDT1A//TH-1
GO:0000272	polysaccharide catabolic process	BP	0.0349901231301945	BAM8//BAM7
GO:0007005	mitochondrion organization	BP	0.0354599187234067	AT5G15550//AT5G06550//YAO//RPS2//AT1G75670
GO:0009644	response to high light intensity	BP	0.0355071269387004	AT5G18420//LPPepsilon1//GEK1//AT2G29500
GO:0031497	chromatin assembly	BP	0.0367709009233927	ORTH2//ATMSH2//HIS4
GO:0016569	covalent chromatin modification	BP	0.0389347852740827	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//AT5G06550//ANT//MAP65-2//ATMSH2//AT1G76630//ATCDT1A
GO:0045934	negative regulation of nucleobase-contai...	BP	0.039558720213972	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0051172	negative regulation of nitrogen compound...	BP	0.039558720213972	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0006323	DNA packaging	BP	0.0397817082054971	ORTH2//ATMSH2//HIS4
GO:0007067	mitotic nuclear division	BP	0.0397817082054971	AtTOP3alpha//ATCAP-C//MAP65-2
GO:0008037	cell recognition	BP	0.0402132429214184	YAO//AT1G61370
GO:0048544	recognition of pollen	BP	0.0402132429214184	YAO//AT1G61370
GO:0018022	peptidyl-lysine methylation	BP	0.0416442610974437	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//MAP65-2//ATMSH2//ATCDT1A
GO:0034968	histone lysine methylation	BP	0.0416442610974437	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//MAP65-2//ATMSH2//ATCDT1A
GO:0009409	response to cold	BP	0.0420761318070792	AT1G51090//AT3G57570//ATMEK1//ATCTC1//ATMSRB3//EDA8//RST1//AT1G50380//ATFBP7//BAM7
GO:0010558	negative regulation of macromolecule bio...	BP	0.0440099571296965	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:2000113	negative regulation of cellular macromol...	BP	0.0440099571296965	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0009890	negative regulation of biosynthetic proc...	BP	0.0463572371648439	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0031327	negative regulation of cellular biosynth...	BP	0.0463572371648439	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//ATMSH2//AT1G76630//ATCDT1A
GO:0009057	macromolecule catabolic process	BP	0.0477552798649257	AT5G26830//UBP21//BAM8//CCS52B//AT3G57570//VFB2//SGT1A//AT1G66660//AT1G66620//ATSKP2;2//BAM7
GO:0010089	xylem development	BP	0.0495359753868345	ANT//AT4G25320//AT1G63520
GO:0006338	chromatin remodeling	BP	0.0514637012624589	ORTH2//ATMSH2
GO:0009875	pollen-pistil interaction	BP	0.0514637012624589	YAO//AT1G61370
GO:0010556	regulation of macromolecule biosynthetic...	BP	0.0517099978315175	ORTH2//AT5G67000//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//MAP65-2//ATMEK1//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//ATFBP7//ATPOT1//ATCDT1A
GO:2000112	regulation of cellular macromolecule bio...	BP	0.0517099978315175	ORTH2//AT5G67000//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//MAP65-2//ATMEK1//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//ATFBP7//ATPOT1//ATCDT1A
GO:0051276	chromosome organization	BP	0.0550060198665805	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//AT5G06550//ANT//MAP65-2//ATCTC1//ATMSH2//RST1//AT1G76630//ATPOT1//ATCDT1A//HIS4
GO:0016567	protein ubiquitination	BP	0.0550992959257819	ORTH2//AT3G49810//EDA8//AT1G66660//AT1G66620//RST1
GO:0016568	chromatin modification	BP	0.0554969339965866	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//AT5G06550//ANT//MAP65-2//ATMSH2//AT1G76630//ATCDT1A
GO:0031326	regulation of cellular biosynthetic proc...	BP	0.0596106895351474	ORTH2//AT5G67000//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//MAP65-2//ATMEK1//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//ATFBP7//ATPOT1//ATCDT1A
GO:0006305	DNA alkylation	BP	0.0608090575830724	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//ANT//ATMSH2
GO:0006306	DNA methylation	BP	0.0608090575830724	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//ANT//ATMSH2
GO:0044728	DNA methylation or demethylation	BP	0.0608090575830724	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//ANT//ATMSH2
GO:0009408	response to heat	BP	0.0611800047201288	LPPepsilon1//AT4G02550//ATFBP7//ATSKP2;2//AT2G29500
GO:0006304	DNA modification	BP	0.062787848451321	ORTH2//AtTOP3alpha//ATCAP-C//CCS52B//ANT//ATMSH2
GO:0010608	posttranscriptional regulation of gene e...	BP	0.0648044485929524	ATCAP-C//ANT//ATMEK1//ATMSH2//AT1G76630//ATFBP7
GO:0007131	reciprocal meiotic recombination	BP	0.0656293116724997	AtTOP3alpha//ATCAP-C//MAP65-2//ATMSH2
GO:0035825	reciprocal DNA recombination	BP	0.0656293116724997	AtTOP3alpha//ATCAP-C//MAP65-2//ATMSH2
GO:0006486	protein glycosylation	BP	0.0683004470562599	AT3G26560//DDI1//RST1//AT3G06340//ALG3
GO:0009101	glycoprotein biosynthetic process	BP	0.0683004470562599	AT3G26560//DDI1//RST1//AT3G06340//ALG3
GO:0043413	macromolecule glycosylation	BP	0.0683004470562599	AT3G26560//DDI1//RST1//AT3G06340//ALG3
GO:0007127	meiosis I	BP	0.0685958125559693	AtTOP3alpha//ATCAP-C//MAP65-2//ATMSH2
GO:0007000	nucleolus organization	BP	0.0701294758421439	ORTH2//MAP65-2
GO:0007059	chromosome segregation	BP	0.0707722118964019	AT5G10710//AtTOP3alpha//ATCAP-C//MAP65-2//RST1
GO:0032446	protein modification by small protein co...	BP	0.0710810528565381	ORTH2//AT3G49810//EDA8//AT1G66660//AT1G66620//RST1
GO:0006325	chromatin organization	BP	0.0713226956093618	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//AT5G06550//ANT//MAP65-2//ATMSH2//AT1G76630//ATCDT1A//HIS4
GO:0006626	protein targeting to mitochondrion	BP	0.0716306827948174	AT5G15550//AT5G06550//RPS2//AT1G75670
GO:0070585	protein localization to mitochondrion	BP	0.0716306827948174	AT5G15550//AT5G06550//RPS2//AT1G75670
GO:0072655	establishment of protein localization to...	BP	0.0716306827948174	AT5G15550//AT5G06550//RPS2//AT1G75670
GO:0009100	glycoprotein metabolic process	BP	0.0732928575471009	AT3G26560//DDI1//RST1//AT3G06340//ALG3
GO:0009642	response to light intensity	BP	0.0747333495795348	AT5G18420//LPPepsilon1//GEK1//AT2G29500
GO:0044249	cellular biosynthetic process	BP	0.0757837162237892	ATSYTC//ORTH2//AT5G10710//MUB2//AT5G26830//AT5G67000//AtTOP3alpha//AT5G64150//SRT1//AT5G54750//ATCAP-C//AT5G47435//UBP21//NRPC2//AT5G44010//TSBtype2//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//AT3G57010//CAN//LPPepsilon1//VFB2//AT3G48185//ANT//GGP3//AT4G27240//MAP65-2//ATMEK1//AT4G24750//YAO//ATMSRB3//ARF13//LAG13//ASIL2//AT3G26560//DDI1//ATMSH2//LPD1//AtMYB4R1//RST1//ATRAB18C//AT3G06340//RPS2//AT1G76580//AT1G76630//AT1G62310//AT1G26640//AtTLP8//anac028//AT1G42440//AT1G34770//ATFBP7//CuAO1//AT1G28530//AT1G75670//ATPOT1//ATORC6//ATCDT1A//TH-1//AT2G24170//ALG3
GO:0070085	glycosylation	BP	0.0758621909290102	AT3G26560//DDI1//RST1//AT3G06340//ALG3
GO:0051301	cell division	BP	0.0761148749967114	ORTH2//AT5G10710//ATCAP-C//CCS52B//MAP65-2//EDA8//AT3G26560//ATMSH2//RST1
GO:0034654	nucleobase-containing compound biosynthe...	BP	0.0771257875077697	ORTH2//AT5G67000//AtTOP3alpha//SRT1//ATCAP-C//AT5G47435//UBP21//NRPC2//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//ATMEK1//YAO//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//AT1G42440//AT1G28530//AT1G75670//ATCDT1A
GO:0006310	DNA recombination	BP	0.0776971399263667	ORTH2//AtTOP3alpha//ATCAP-C//MAP65-2//ATMSH2//AT1G34770
GO:0009909	regulation of flower development	BP	0.0780075190292329	ATCAP-C//AT5G06550//MAP65-2//EDA8//ATFYPP3//ATMSH2//RST1//ATCDT1A
GO:0006511	ubiquitin-dependent protein catabolic pr...	BP	0.0787937919610429	UBP21//CCS52B//VFB2//SGT1A//AT1G66660//AT1G66620//ATSKP2;2
GO:0051302	regulation of cell division	BP	0.0805527396507043	CCS52B//MAP65-2//ATMSH2
GO:0051603	proteolysis involved in cellular protein...	BP	0.0816961337574352	AT5G26830//UBP21//CCS52B//VFB2//SGT1A//AT1G66660//AT1G66620//ATSKP2;2
GO:0019941	modification-dependent protein catabolic...	BP	0.0828985061628262	UBP21//CCS52B//VFB2//SGT1A//AT1G66660//AT1G66620//ATSKP2;2
GO:0043632	modification-dependent macromolecule cat...	BP	0.0828985061628262	UBP21//CCS52B//VFB2//SGT1A//AT1G66660//AT1G66620//ATSKP2;2
GO:0006417	regulation of translation	BP	0.0836074818304754	ATMEK1//ATFBP7
GO:0010629	negative regulation of gene expression	BP	0.0845011109122792	ORTH2//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//ANT//MAP65-2//ATMSH2//AT1G76630//ATCDT1A
GO:0018130	heterocycle biosynthetic process	BP	0.0851212592707137	ORTH2//AT5G67000//AtTOP3alpha//AT5G64150//SRT1//ATCAP-C//AT5G47435//UBP21//NRPC2//TSBtype2//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//ATMEK1//YAO//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//AT1G42440//AT1G28530//AT1G75670//ATCDT1A//TH-1
GO:0019219	regulation of nucleobase-containing comp...	BP	0.0854065081397141	ORTH2//AT5G67000//AtTOP3alpha//SRT1//ATCAP-C//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//MAP65-2//ATMEK1//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//ATPOT1//ATCDT1A
GO:0016570	histone modification	BP	0.0863804747690359	ORTH2//AT5G15070//AtTOP3alpha//ATCAP-C//CCS52B//AT5G06550//MAP65-2//ATMSH2//ATCDT1A
GO:0006351	transcription, DNA-templated	BP	0.0881693626257535	ORTH2//AT5G67000//AtTOP3alpha//SRT1//ATCAP-C//NRPC2//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//ATMEK1//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//AT1G75670//ATCDT1A
GO:0097659	nucleic acid-templated transcription	BP	0.0881693626257535	ORTH2//AT5G67000//AtTOP3alpha//SRT1//ATCAP-C//NRPC2//CCS52B//HAC11//NF-YB12//AT5G06550//HAT14//ANT//AT4G27240//ATMEK1//ARF13//ASIL2//ATMSH2//AtMYB4R1//ATRAB18C//AT1G76580//AT1G76630//AT1G62310//AtTLP8//anac028//AT1G75670//ATCDT1A
GO:0000003	reproduction	BP	0.0882300059884	AtTOP3alpha//ATCAP-C//NRPC2//CCS52B//ANT//MAP65-2//EDA8//ASIL2//ATMSH2//RST1//AT1G34770
GO:0030244	cellulose biosynthetic process	BP	0.0893584727253363	MUB2//AT5G54750//ALG3