GOID TERM ONTOLOGY pValue Genes GO:0043473 pigmentation BP 0.00680571327972971 ABCB15//LAX3//ATPIN7//FEI2//AGL20 GO:0043476 pigment accumulation BP 0.00680571327972971 ABCB15//LAX3//ATPIN7//FEI2//AGL20 GO:0043478 pigment accumulation in response to UV l... BP 0.00680571327972971 ABCB15//LAX3//ATPIN7//FEI2//AGL20 GO:0043479 pigment accumulation in tissues in respo... BP 0.00680571327972971 ABCB15//LAX3//ATPIN7//FEI2//AGL20 GO:0043480 pigment accumulation in tissues BP 0.00680571327972971 ABCB15//LAX3//ATPIN7//FEI2//AGL20 GO:0043481 anthocyanin accumulation in tissues in r... BP 0.00680571327972971 ABCB15//LAX3//ATPIN7//FEI2//AGL20 GO:2000243 positive regulation of reproductive proc... BP 0.0105640462090358 EBS//ATVOZ1//AGL20 GO:0009798 axis specification BP 0.0145255856009457 AGD3//ATHD2A//AT1G26530//ATPIN7 GO:0048569 post-embryonic organ development BP 0.0157488697908809 CYP708//AGD3//AtMTM2//CTF7//AT4G29360//ENDO3//AT4G02180//AT3G32120//ABCB15//ATMYB57//LAX3//NRP2//AGL20 GO:0010583 response to cyclopentenone BP 0.0158140293748413 AT5G59530//ATWRKY28//ACT11//LAX3//ATPIN7 GO:0034655 nucleobase-containing compound catabolic... BP 0.0168349407186134 MED19A//CBNAC//ENDO3//AT3G24740 GO:0006333 chromatin assembly or disassembly BP 0.0186657719626717 AT5G11470//EBS//NRP2//HIS1-3//AT2G37470 GO:0007389 pattern specification process BP 0.0233065747280396 AGD3//ATHD2A//CTF7//DDB1B//AT4G02180//OPS//AT1G26530//ATPIN7 GO:0048582 positive regulation of post-embryonic de... BP 0.0246370454718658 EBS//ATVOZ1//AGL20 GO:0009887 organ morphogenesis BP 0.0261889767172491 AGD3//ATMIN7//FAB1A//AT4G29360//AT4G02180//AT3G32120//OPS//LAX3//NRP2//SPL10 GO:0022622 root system development BP 0.026889348581681 CYP708//AGD3//NOXY2//ATDFB//AtMTM2//CTF7//OPS//LAX3//NRP2//ATPIN7//FEI2 GO:0009739 response to gibberellin BP 0.0291859226856392 SLY2//GIS2//ATMYB57//AT2G17650//AGL20 GO:0051240 positive regulation of multicellular org... BP 0.0341669853980888 EBS//ATVOZ1//AGL20 GO:0042435 indole-containing compound biosynthetic ... BP 0.037336640518233 ATMYB34//AT1G49500//GRP3S//SCPL8 GO:0048527 lateral root development BP 0.037336640518233 CYP708//AtMTM2//LAX3//NRP2 GO:0010311 lateral root formation BP 0.038746468957968 LAX3//NRP2 GO:0051094 positive regulation of developmental pro... BP 0.0395488919408183 EBS//ATVOZ1//AGL20 GO:0048513 organ development BP 0.0410588649074477 CYP708//AGD3//NOXY2//ATDFB//AtMTM2//ATMIN7//FAB1A//CTF7//AT4G29360//ENDO3//DDB1B//AT4G02180//AT3G32120//ABCB15//ATMYB57//OPS//LAX3//AT1G26530//NRP2//SPL10//ATPIN7//FEI2//AGL20 GO:0000956 nuclear-transcribed mRNA catabolic proce... BP 0.0423915151180018 MED19A//CBNAC//AT3G24740 GO:0006401 RNA catabolic process BP 0.0423915151180018 MED19A//CBNAC//AT3G24740 GO:0006402 mRNA catabolic process BP 0.0423915151180018 MED19A//CBNAC//AT3G24740 GO:0009944 polarity specification of adaxial/abaxia... BP 0.0423915151180018 AGD3//ATHD2A//AT1G26530 GO:0065001 specification of axis polarity BP 0.0423915151180018 AGD3//ATHD2A//AT1G26530 GO:0003002 regionalization BP 0.0424886224896806 AGD3//ATHD2A//CTF7//AT4G02180//OPS//AT1G26530 GO:0048528 post-embryonic root development BP 0.0434718101439132 CYP708//AtMTM2//LAX3//NRP2 GO:0051276 chromosome organization BP 0.0439173518520704 AT5G08430//AGD3//AT5G11470//ATMIN7//FAB1A//CTF7//AT4G29360//EBS//DDB1B//NRP2//HIS1-3//AT2G37470//AT2G45700 GO:0009886 post-embryonic morphogenesis BP 0.0440586238337528 AGD3//AT4G29360//AT4G02180//AT3G32120//ATCYP38//OPS//LAX3//NRP2//PSRP3/1 GO:0009926 auxin polar transport BP 0.0453339823861417 ABCB15//LAX3//ATPIN7 GO:0009740 gibberellic acid mediated signaling path... BP 0.0483752201929899 SLY2//ATMYB57//AT2G17650 GO:0009943 adaxial/abaxial axis specification BP 0.0483752201929899 AGD3//ATHD2A//AT1G26530 GO:0010476 gibberellin mediated signaling pathway BP 0.0483752201929899 SLY2//ATMYB57//AT2G17650 GO:0006633 fatty acid biosynthetic process BP 0.0499781591469715 KCS15//ATCYP38//LACS9//KCS12//SCPL8 GO:0048583 regulation of response to stimulus BP 0.0503578629904443 SLY2//ATMIN7//CBNAC//DDB1B//AT3G18280//ABCB15//ATCYP38//AT1G75460//ATVOZ1//AT1G22885//AtDBP1 GO:0009914 hormone transport BP 0.0515140652943147 ABCB15//LAX3//ATPIN7 GO:0009955 adaxial/abaxial pattern specification BP 0.0515140652943147 AGD3//ATHD2A//AT1G26530 GO:0060918 auxin transport BP 0.0515140652943147 ABCB15//LAX3//ATPIN7 GO:0071370 cellular response to gibberellin stimulu... BP 0.0515140652943147 SLY2//ATMYB57//AT2G17650 GO:0048645 organ formation BP 0.0537879279986019 AGD3//AT4G29360//AT4G02180//LAX3//NRP2 GO:0048518 positive regulation of biological proces... BP 0.0538759530974207 ATMYB34//AGD3//ATMIN7//CBNAC//FAB1A//EBS//AtMYB83//AT3G18280//ATCYP38//AT1G60970//AT1G07440//ATVOZ1//AtBE2//SPL10//AT1G22885//AGL20 GO:0009832 plant-type cell wall biogenesis BP 0.0548813971198693 AT4G14360//AtMYB83//FEI2//AT2G25800 GO:0042430 indole-containing compound metabolic pro... BP 0.0548813971198693 ATMYB34//AT1G49500//GRP3S//SCPL8 GO:0048364 root development BP 0.0569825180271142 CYP708//AGD3//NOXY2//ATDFB//AtMTM2//CTF7//LAX3//NRP2//ATPIN7//FEI2 GO:0009888 tissue development BP 0.0579437571411091 CYP708//AGD3//GIS2//ATDFB//ATMIN7//FAB1A//DDB1B//ATCYP38//OPS//LAX3//AT1G26530//AT1G08180//PSRP3/1//SPL10//ATPIN7//FEI2//AGL20 GO:0006334 nucleosome assembly BP 0.065019447195432 NRP2//HIS1-3//AT2G37470 GO:0034728 nucleosome organization BP 0.065019447195432 NRP2//HIS1-3//AT2G37470 GO:0065004 protein-DNA complex assembly BP 0.065019447195432 NRP2//HIS1-3//AT2G37470 GO:0071824 protein-DNA complex subunit organization BP 0.065019447195432 NRP2//HIS1-3//AT2G37470 GO:0009911 positive regulation of flower developmen... BP 0.0654904601856845 EBS//AGL20 GO:0009411 response to UV BP 0.0684167948034485 ABCB15//LAX3//ATPIN7//FEI2//AGL20 GO:0048731 system development BP 0.0701038876329397 AT5G08430//AtELF5//CYP708//SLY2//AGD3//NOXY2//ATDFB//AtMTM2//ATHD2A//ATMIN7//FAB1A//CTF7//AT4G29360//EBS//ENDO3//DDB1B//AT4G02180//AT3G32120//ABCB15//ATHSFA1E//ATMYB57//ATCYP38//OPS//LAX3//AT1G26530//NRP2//ATVOZ1//PSRP3/1//SPL10//ATPIN7//FEI2//AGL20 GO:0045229 external encapsulating structure organiz... BP 0.0741936949717783 AT4G14360//AT5G59850//AGD3//NOXY2//KCS15//ENDO3//AT3G10720//LAX3//ATPIN7//FEI2//CPK20 GO:0048440 carpel development BP 0.0752989570374043 ENDO3//AT4G02180//AT3G32120//ABCB15//AGL20 GO:0048469 cell maturation BP 0.0753209481544612 CYP708//AGD3//ATDFB//LAX3//ATPIN7//FEI2 GO:0048764 trichoblast maturation BP 0.0753209481544612 CYP708//AGD3//ATDFB//LAX3//ATPIN7//FEI2 GO:0048765 root hair cell differentiation BP 0.0753209481544612 CYP708//AGD3//ATDFB//LAX3//ATPIN7//FEI2 GO:0044283 small molecule biosynthetic process BP 0.0757630736103195 AT5G08430//ATMYB34//AtcPT5//AT5G44710//SQP2//ATDFB//AtMTM2//KCS15//AT3G10720//ATCYP38//LAX3//LACS9//ATCK1//AT1G49500//GRP3S//KCS12//AT2G17650//SCPL8 GO:0009684 indoleacetic acid biosynthetic process BP 0.0761051261511413 AT1G49500//GRP3S//SCPL8 GO:0031497 chromatin assembly BP 0.0761051261511413 NRP2//HIS1-3//AT2G37470 GO:0006355 regulation of transcription, DNA-templat... BP 0.0795919215406808 AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:1903506 regulation of nucleic acid-templated tra... BP 0.0795919215406808 AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:2001141 regulation of RNA biosynthetic process BP 0.0795919215406808 AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:0006323 DNA packaging BP 0.0799740791014398 NRP2//HIS1-3//AT2G37470 GO:0006857 oligopeptide transport BP 0.0799740791014398 AT5G13400//AT4G01090//AT1G52190 GO:0009683 indoleacetic acid metabolic process BP 0.0799740791014398 AT1G49500//GRP3S//SCPL8 GO:0015833 peptide transport BP 0.0799740791014398 AT5G13400//AT4G01090//AT1G52190 GO:0051252 regulation of RNA metabolic process BP 0.0818835125128665 AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:0044270 cellular nitrogen compound catabolic pro... BP 0.0825436780322656 MED19A//CBNAC//ENDO3//AT3G24740//AT1G49500 GO:0046700 heterocycle catabolic process BP 0.0825436780322656 MED19A//CBNAC//ENDO3//AT3G24740//AT1G49500 GO:0009893 positive regulation of metabolic process BP 0.0835106324743327 ATMYB34//AtMYB83//AT3G18280//ATCYP38//AT1G60970//AT1G07440//ATVOZ1//AtBE2//SPL10//AT1G22885//AGL20 GO:0048646 anatomical structure formation involved ... BP 0.083671359157773 AGD3//KCS15//AT4G29360//AT4G02180//LAX3//NRP2 GO:0018130 heterocycle biosynthetic process BP 0.0836886157288901 ATCG00800//AT5G08430//AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//ATDFB//ATHD2A//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//AT1G49500//AT1G28530//GRP3S//SPL10//AT1G22885//AT2G28810//AT2G35310//NAPRT2//SCPL8//AT2G45700//AGL20 GO:0010101 post-embryonic root morphogenesis BP 0.0837343811257317 LAX3//NRP2 GO:0010102 lateral root morphogenesis BP 0.0837343811257317 LAX3//NRP2 GO:0048467 gynoecium development BP 0.0850382839890487 ENDO3//AT4G02180//AT3G32120//ABCB15//AGL20 GO:0021700 developmental maturation BP 0.0858364551375606 CYP708//AGD3//ATDFB//LAX3//ATPIN7//FEI2 GO:0048767 root hair elongation BP 0.0881496255246272 ATDFB//LAX3//ATPIN7//FEI2 GO:0048437 floral organ development BP 0.0883720941744103 AGD3//CTF7//AT4G29360//ENDO3//AT4G02180//AT3G32120//ABCB15//ATMYB57//AGL20 GO:0071555 cell wall organization BP 0.0892172281140638 AT4G14360//AT5G59850//AGD3//NOXY2//ENDO3//AT3G10720//LAX3//ATPIN7//FEI2//CPK20 GO:0009880 embryonic pattern specification BP 0.0901226235041211 DDB1B//ATPIN7 GO:1901362 organic cyclic compound biosynthetic pro... BP 0.0924028693895535 ATCG00800//AT5G08430//AT5G04840//ATMYB34//AT5G46010//SQP2//AT5G16680//AtMYB40//GIS2//AT5G06800//ATDFB//AtMTM2//ATHD2A//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//AT3G10720//ATMYB57//ATCYP38//LAX3//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//AT1G49500//AT1G28530//GRP3S//SPL10//AT1G22885//AT2G28810//AT2G35310//NAPRT2//SCPL8//AT2G45700//AGL20 GO:0019439 aromatic compound catabolic process BP 0.0927580495691726 MED19A//CBNAC//ENDO3//AT3G24740//AT1G49500 GO:0009889 regulation of biosynthetic process BP 0.0944661586581376 AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//AT3G18280//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT1G22885//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:0048827 phyllome development BP 0.0953395477770062 AGD3//CTF7//AT4G29360//ENDO3//DDB1B//AT4G02180//AT3G32120//ABCB15//ATMYB57//OPS//SPL10//AGL20 GO:0042886 amide transport BP 0.096272301731674 AT5G13400//AT4G01090//AT1G52190 GO:0006722 triterpenoid metabolic process BP 0.096649233706144 CYP708//SQP2 GO:0072330 monocarboxylic acid biosynthetic process BP 0.0968067319995371 AtMTM2//KCS15//ATCYP38//LACS9//ATCK1//AT1G49500//GRP3S//KCS12//SCPL8 GO:0016053 organic acid biosynthetic process BP 0.096912525164534 AT5G08430//ATMYB34//AT5G44710//ATDFB//AtMTM2//KCS15//ATCYP38//LACS9//ATCK1//AT1G49500//GRP3S//KCS12//AT2G17650//SCPL8 GO:0046394 carboxylic acid biosynthetic process BP 0.096912525164534 AT5G08430//ATMYB34//AT5G44710//ATDFB//AtMTM2//KCS15//ATCYP38//LACS9//ATCK1//AT1G49500//GRP3S//KCS12//AT2G17650//SCPL8 GO:0044271 cellular nitrogen compound biosynthetic ... BP 0.0998774027024155 ATCG00800//AT5G08430//AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//ATDFB//ATHD2A//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//AT1G49500//AT1G28530//GRP3S//SPL10//AT2G28810//AT2G35310//NAPRT2//SCPL8//AT2G45700//AGL20 GO:0006351 transcription, DNA-templated BP 0.104649080267179 ATCG00800//AT5G08430//AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:0032774 RNA biosynthetic process BP 0.104649080267179 ATCG00800//AT5G08430//AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:0097659 nucleic acid-templated transcription BP 0.104649080267179 ATCG00800//AT5G08430//AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//SPL10//AT2G28810//AT2G35310//AT2G45700//AGL20 GO:0019438 aromatic compound biosynthetic process BP 0.107834519305361 ATCG00800//AT5G08430//AT5G04840//ATMYB34//AT5G46010//AT5G16680//AtMYB40//GIS2//AT5G06800//ATDFB//AtMTM2//ATHD2A//CBNAC//AT4G29360//EBS//ATWRKY28//ARF13//AtMYB83//ATRL6//GATA24//ATHSFA1E//ATMYB57//ATCYP38//AT1G60970//AT1G76350//IAA34//AT1G75460//ATVOZ1//AT1G49500//AT1G28530//GRP3S//SPL10//AT1G22885//AT2G28810//AT2G35310//NAPRT2//SCPL8//AT2G45700//AGL20 GO:1901361 organic cyclic compound catabolic proces... BP 0.109234872813144 MED19A//CBNAC//ENDO3//AT3G24740//AT1G49500 GO:0009072 aromatic amino acid family metabolic pro... BP 0.111155569579214 ATMYB34//ATG8B//AT1G49500//SCPL8