GOID TERM ONTOLOGY pValue Genes GO:0009686 gibberellin biosynthetic process BP 0.00147040402268039 RGL2//ATGA20OX4//AT1G72570 GO:0016102 diterpenoid biosynthetic process BP 0.00168906285750487 RGL2//ATGA20OX4//AT1G72570 GO:0009685 gibberellin metabolic process BP 0.0030830238715653 RGL2//ATGA20OX4//AT1G72570 GO:0016114 terpenoid biosynthetic process BP 0.0033236492762877 AT5G66430//RGL2//ATGA20OX4//AT1G72660//AT1G72570 GO:0016101 diterpenoid metabolic process BP 0.00379072245929215 RGL2//ATGA20OX4//AT1G72570 GO:0006721 terpenoid metabolic process BP 0.00631377702551192 AT5G66430//RGL2//ATGA20OX4//AT1G72660//AT1G72570 GO:0055067 monovalent inorganic cation homeostasis BP 0.0085539963968141 ATCHX19//AHA10 GO:0031497 chromatin assembly BP 0.0107456255252262 HTA6//AT3G20010//AT1G09200 GO:0006323 DNA packaging BP 0.0114608519037318 HTA6//AT3G20010//AT1G09200 GO:0008299 isoprenoid biosynthetic process BP 0.0131224031005911 AT5G66430//RGL2//ATGA20OX4//AT1G72660//AT1G72570 GO:0009156 ribonucleoside monophosphate biosyntheti... BP 0.0172270198266164 UKL2//ACA9//AHA10 GO:0009124 nucleoside monophosphate biosynthetic pr... BP 0.0181606033619777 UKL2//ACA9//AHA10 GO:0006720 isoprenoid metabolic process BP 0.0202605588524217 AT5G66430//RGL2//ATGA20OX4//AT1G72660//AT1G72570 GO:0009163 nucleoside biosynthetic process BP 0.0254726694213027 UKL2//ACA9//AHA10 GO:0042455 ribonucleoside biosynthetic process BP 0.0254726694213027 UKL2//ACA9//AHA10 GO:0009860 pollen tube growth BP 0.0275221985288405 AT5G36260//ABCA12//AT5G42490//AT4G33230//ACA9 GO:0071103 DNA conformation change BP 0.0315278027525962 HTA6//AT3G20010//AT1G09200 GO:0009809 lignin biosynthetic process BP 0.0325012350862084 UKL2//ANAC012 GO:0031047 gene silencing by RNA BP 0.0378679184501375 SIC//AT4G01730//AT3G20010//AT1G29630//AtTPX2 GO:0000375 RNA splicing, via transesterification re... BP 0.0396994004098117 SIC//nMAT1//APO1 GO:0000377 RNA splicing, via transesterification re... BP 0.0396994004098117 SIC//nMAT1//APO1 GO:0006333 chromatin assembly or disassembly BP 0.0396994004098117 HTA6//AT3G20010//AT1G09200 GO:0044702 single organism reproductive process BP 0.0417467800349313 AT5G36260//ABCA12//AT5G57130//IMPA-8//AT5G42490//ADL2//AT4G33230//TSF//AT4G01730//AT1G17960//AT3G22490//ACA9//RGL2//AT1G48580//ANAC012//AtTPX2//HDG3 GO:0009699 phenylpropanoid biosynthetic process BP 0.0441494545101874 UKL2//ANAC012//AHA10 GO:0009161 ribonucleoside monophosphate metabolic p... BP 0.0456859241517522 UKL2//ACA9//AHA10 GO:0009123 nucleoside monophosphate metabolic proce... BP 0.0472487095252578 UKL2//ACA9//AHA10 GO:0098771 inorganic ion homeostasis BP 0.0472487095252578 ACA9//ATCHX19//AHA10 GO:0048868 pollen tube development BP 0.0484106964456558 AT5G36260//ABCA12//AT5G42490//AT4G33230//ACA9 GO:0009658 chloroplast organization BP 0.0530343627279291 ADL2//APO1 GO:0006334 nucleosome assembly BP 0.0587296164571229 HTA6//AT1G09200 GO:0034728 nucleosome organization BP 0.0587296164571229 HTA6//AT1G09200 GO:1901699 cellular response to nitrogen compound BP 0.058911225670782 ABCG37//SIC//AT3G20010 GO:0009932 cell tip growth BP 0.0616135616119132 AT5G36260//ABCA12//AT5G42490//AT4G33230//ACA9 GO:0065004 protein-DNA complex assembly BP 0.0646256888265432 HTA6//AT1G09200 GO:0071824 protein-DNA complex subunit organization BP 0.0646256888265432 HTA6//AT1G09200 GO:0040029 regulation of gene expression, epigeneti... BP 0.0656390592895101 AT3G51280//SIC//AT4G01730//AT3G20010//AT1G29630//AtTPX2 GO:0007018 microtubule-based movement BP 0.0676454940696846 AT5G42490//AT4G24170 GO:0000904 cell morphogenesis involved in different... BP 0.0695712732829957 AT5G36260//ABCA12//AT5G42490//AT4G33230//ACA9//ENO1 GO:0006406 mRNA export from nucleus BP 0.0707113074259486 AT5G15810//AT2G40430 GO:0051028 mRNA transport BP 0.0707113074259486 AT5G15810//AT2G40430 GO:0055080 cation homeostasis BP 0.071793443685454 ACA9//ATCHX19//AHA10 GO:0006754 ATP biosynthetic process BP 0.0738217804296231 ACA9//AHA10 GO:0009808 lignin metabolic process BP 0.0738217804296231 UKL2//ANAC012 GO:0000003 reproduction BP 0.0760420421109948 SHOC1//IMPA-8//ADL2//ACA9//RGL2//AT1G29630//AT1G48580//ANAC012 GO:0009145 purine nucleoside triphosphate biosynthe... BP 0.0801714289685557 ACA9//AHA10 GO:0009201 ribonucleoside triphosphate biosynthetic... BP 0.0801714289685557 ACA9//AHA10 GO:0009206 purine ribonucleoside triphosphate biosy... BP 0.0801714289685557 ACA9//AHA10 GO:0009142 nucleoside triphosphate biosynthetic pro... BP 0.0834080239881608 ACA9//AHA10 GO:0006342 chromatin silencing BP 0.0836832467985507 AT4G01730//AT3G20010//AT1G29630//AtTPX2 GO:0045814 negative regulation of gene expression, ... BP 0.0852538419813965 AT4G01730//AT3G20010//AT1G29630//AtTPX2 GO:0009119 ribonucleoside metabolic process BP 0.0879163386064449 UKL2//ACA9//AHA10 GO:0009127 purine nucleoside monophosphate biosynth... BP 0.0899984737449867 ACA9//AHA10 GO:0009168 purine ribonucleoside monophosphate bios... BP 0.0899984737449867 ACA9//AHA10 GO:0006325 chromatin organization BP 0.0901417953102631 HTA6//AT5G05420//AT3G51280//AT4G01730//AT3G20010//AT1G09200//AtTPX2 GO:0050801 ion homeostasis BP 0.0921672340035607 ACA9//ATCHX19//AHA10 GO:0006403 RNA localization BP 0.0933498821722751 AT5G15810//AT2G40430 GO:0006405 RNA export from nucleus BP 0.0933498821722751 AT5G15810//AT2G40430 GO:0009657 plastid organization BP 0.0933498821722751 ADL2//APO1 GO:0050657 nucleic acid transport BP 0.0933498821722751 AT5G15810//AT2G40430 GO:0050658 RNA transport BP 0.0933498821722751 AT5G15810//AT2G40430 GO:0051236 establishment of RNA localization BP 0.0933498821722751 AT5G15810//AT2G40430 GO:0022414 reproductive process BP 0.0956284868551325 AT5G36260//ABCA12//AT5G57130//IMPA-8//AT5G42490//ADL2//AT4G33230//TSF//AT4G01730//AT1G17960//AT3G22490//ACA9//RGL2//nMAT1//AT1G48580//ANAC012//AtTPX2//HDG3 GO:0009856 pollination BP 0.0990908283983959 AT5G36260//ABCA12//AT5G42490//AT4G33230//ACA9 GO:0044706 multi-multicellular organism process BP 0.0990908283983959 AT5G36260//ABCA12//AT5G42490//AT4G33230//ACA9 GO:0003006 developmental process involved in reprod... BP 0.0994417601663863 AT5G36260//ABCA12//AT5G57130//IMPA-8//AT5G42490//ADL2//AT4G33230//TSF//AT4G01730//AT1G17960//AT3G22490//ACA9//RGL2//nMAT1//AT1G48580//AtTPX2//HDG3 GO:0051168 nuclear export BP 0.100159112439831 AT5G15810//AT2G40430 GO:0016458 gene silencing BP 0.101926252884757 SIC//AT4G01730//AT3G20010//AT1G29630//AtTPX2 GO:0048609 multicellular organismal reproductive pr... BP 0.101926252884757 IMPA-8//ADL2//RGL2//AT1G48580//ANAC012 GO:0009062 fatty acid catabolic process BP 0.103158052975653 RGL2//ATDPL1//AT1G23070 GO:0009112 nucleobase metabolic process BP 0.104188274544001 174_ GO:0018202 peptidyl-histidine modification BP 0.104188274544001 125_ GO:1900376 regulation of secondary metabolite biosy... BP 0.104188274544001 174_ GO:0015931 nucleobase-containing compound transport BP 0.105416492456017 AT5G15810//AT2G40430//ATENT7 GO:0006270 DNA replication initiation BP 0.107102535194092 AT3G51280//AtTPX2 GO:0009698 phenylpropanoid metabolic process BP 0.107694416512289 UKL2//ANAC012//AHA10 GO:0072329 monocarboxylic acid catabolic process BP 0.109991562010833 RGL2//ATDPL1//AT1G23070 GO:0006730 one-carbon metabolic process BP 0.113995258616653 649_ GO:0046131 pyrimidine ribonucleoside metabolic proc... BP 0.113995258616653 174_ GO:0044703 multi-organism reproductive process BP 0.116801620098417 AT5G36260//ABCA12//IMPA-8//AT5G42490//AT4G33230//ACA9//AT1G48580 GO:0009116 nucleoside metabolic process BP 0.116995678031234 UKL2//ACA9//AHA10 GO:0008283 cell proliferation BP 0.117740056797568 HTA6//AT3G51280//AT1G09200//AtTPX2 GO:0009152 purine ribonucleotide biosynthetic proce... BP 0.117749805326706 ACA9//AHA10 GO:0009855 determination of bilateral symmetry BP 0.117749805326706 AT5G57130//AT3G20010 GO:0009799 specification of symmetry BP 0.121356506354398 AT5G57130//AT3G20010 GO:0042451 purine nucleoside biosynthetic process BP 0.121356506354398 ACA9//AHA10 GO:0046129 purine ribonucleoside biosynthetic proce... BP 0.121356506354398 ACA9//AHA10 GO:0009887 organ morphogenesis BP 0.122887736767165 AT5G57130//AT4G01730//RGL2//AT1G72570//ASL18 GO:0010675 regulation of cellular carbohydrate meta... BP 0.123695750266008 174_ GO:1901659 glycosyl compound biosynthetic process BP 0.124163208153852 UKL2//ACA9//AHA10 GO:0032504 multicellular organism reproduction BP 0.127624976028785 IMPA-8//ADL2//RGL2//AT1G48580//ANAC012 GO:0080167 response to karrikin BP 0.128650119040685 AT1G80530//BGLU4 GO:0009900 dehiscence BP 0.133290896421774 703_ GO:0018871 1-aminocyclopropane-1-carboxylate metabo... BP 0.133290896421774 830_ GO:0042218 1-aminocyclopropane-1-carboxylate biosyn... BP 0.133290896421774 830_ GO:0048235 pollen sperm cell differentiation BP 0.133290896421774 390_ GO:0006606 protein import into nucleus BP 0.13895942818192 AT5G15810//NTL//AT2G40430 GO:0009827 plant-type cell wall modification BP 0.13895942818192 AT5G36260//ABCA12//ACA9 GO:0044744 protein targeting to nucleus BP 0.13895942818192 AT5G15810//NTL//AT2G40430 GO:0051170 nuclear import BP 0.13895942818192 AT5G15810//NTL//AT2G40430 GO:1902593 single-organism nuclear import BP 0.13895942818192 AT5G15810//NTL//AT2G40430