GOID TERM ONTOLOGY pValue Genes GO:0046467 membrane lipid biosynthetic process BP 0.000709689243639255 ASUS1//AT5G09570//PUT3//SETH2//AT3G23870//ATSMO1//ATSPS3F//AT1G11880 GO:0071705 nitrogen compound transport BP 0.00104646926873162 ABCI2//AT2G41620//AT5G26010//AT5G64100//AAP4//AT5G56350//AT5G42420//ASFT//AT5G39990//PUT3//AT3G43270//ATNST-KT1//AT4G30670//ATIRT1//AtWRKY47//AT3G25260//AT1G77610//AT1G52200//NRT1.5//SIAR1//ABCB4//ATPP2-A3//EMB1611//CAT5 GO:1903509 liposaccharide metabolic process BP 0.00114061579167088 ASUS1//AT5G24810//AT5G09570//SETH2//AT3G23870//ATSPS3F//AT1G11880 GO:0006825 copper ion transport BP 0.00163117647744815 COPT5//AT5G24580//ATCOX17 GO:0009306 protein secretion BP 0.00163117647744815 ATVPS33//AT1G29310//ATSYTB GO:0006643 membrane lipid metabolic process BP 0.00194811193887185 ASUS1//AT5G09570//PUT3//SETH2//AT3G23870//ATSMO1//ATSPS3F//AT1G11880 GO:0009247 glycolipid biosynthetic process BP 0.00263370081593619 ASUS1//AT5G09570//SETH2//AT3G23870//ATSPS3F//AT1G11880 GO:0032940 secretion by cell BP 0.00274154519933951 ATEXO70F1//ATVPS33//AT1G29310//ATSYTB GO:0046903 secretion BP 0.00274154519933951 ATEXO70F1//ATVPS33//AT1G29310//ATSYTB GO:0010876 lipid localization BP 0.00277813738984521 AT2G41620//DOT2//ACBP2//AtPMS1//AT2G22050//AT1G68710//ATNHX5//AT2G10940//EMB1611 GO:1901700 response to oxygen-containing compound BP 0.00327074389270909 CYT1//AT2G41620//ATMYB12//ARF7//ASUS1//COPT5//AT5G08300//DOT2//AT5G26010//AT5G64100//AAP4//SRO5//PDCB1//ATEXO70F1//SLY2//BSK2//ATH3//ASFT//ATCHS//LECRKA4.2//BOP1//CYP94B3//AT4G38410//KAI2//AT4G30670//ATVLN4//ATCBF3//AT4G22530//CRK28//ATIRT1//ATGRP2//AtSFR6//AtPMS1//AtWRKY47//ADR1//ATPUB9//AT1G52200//NRT1.5//AT2G23910//PSAP//ABCB4//ATPP2-A3//AT2G30810//EMB1611//ATGRP23 GO:0010167 response to nitrate BP 0.00329098057010665 AT5G26010//AT5G64100//ASFT//AT4G30670//ATIRT1//AtWRKY47//AT1G52200//NRT1.5//ATPP2-A3 GO:0010162 seed dormancy process BP 0.00343470008869759 AT2G41620//DOT2//PDCB1//ATHD2A//AtPMS1//EMB1611 GO:0022611 dormancy process BP 0.00343470008869759 AT2G41620//DOT2//PDCB1//ATHD2A//AtPMS1//EMB1611 GO:0015706 nitrate transport BP 0.00347756579371363 AT5G26010//AT5G64100//ASFT//AT4G30670//ATIRT1//AtWRKY47//AT1G52200//NRT1.5//ATPP2-A3 GO:0006664 glycolipid metabolic process BP 0.00440426161367133 ASUS1//AT5G09570//SETH2//AT3G23870//ATSPS3F//AT1G11880 GO:0010431 seed maturation BP 0.00692849051585541 AT2G41620//DOT2//PDCB1//ATHD2A//AtPMS1//EMB1611 GO:0009691 cytokinin biosynthetic process BP 0.00812114803325187 ATIPT5//AtPMS1//ATWOX14 GO:0042127 regulation of cell proliferation BP 0.00867099355721643 PSY1//ARGOS//GLV3//UNE6//ATCUL3 GO:0009743 response to carbohydrate BP 0.0149341175796214 AT2G41620//ATMYB12//ASUS1//AT5G08300//DOT2//ATCHS//KAI2//AtPMS1//AT2G23910//ABCB4//EMB1611 GO:0006820 anion transport BP 0.0150615357048615 AT5G26010//AT5G64100//AAP4//AT5G56350//ASFT//AT3G43270//AT4G30670//ATIRT1//AtWRKY47//AT1G77610//AT1G52200//NRT1.5//SIAR1//AT1G68710//ABCB4//ATPP2-A3//CAT5 GO:0001101 response to acid chemical BP 0.0155156488270791 CYT1//ASUS1//COPT5//AT5G26010//AT5G64100//AAP4//PDCB1//SLY2//ASFT//ATCHS//LECRKA4.2//BOP1//CYP94B3//AT4G38410//AT4G30670//ATVLN4//ATCBF3//ATIRT1//ATGRP2//AtSFR6//AtWRKY47//ADR1//ATPUB9//AT1G52200//NRT1.5//PSAP//ABCB4//ATPP2-A3//AT2G30810//ATGRP23 GO:0009631 cold acclimation BP 0.0167797518412197 ATCBF3//ATGRP2//AtSFR6 GO:0019915 lipid storage BP 0.0172731913988683 AT2G41620//DOT2//AtPMS1//EMB1611 GO:0009629 response to gravity BP 0.0175619032511999 ARF7//ATCHS//GLV3//MEL4//ATCUL3//ABCB4 GO:0010035 response to inorganic substance BP 0.0179961543469593 CYT1//ASUS1//AT5G08300//AT5G26010//AT5G64100//AAP4//ATEXO70F1//ATH3//ASFT//ATRBOHA//AT3G55410//AT4G38410//AT4G30670//ACBP2//ATCBF3//ATIRT1//ATGRP2//AtWRKY47//ADR1//ATCOX17//ATGSTU8//AT1G52200//NRT1.5//ALS3//PAG1//ABCB4//ATPP2-A3 GO:0009880 embryonic pattern specification BP 0.018947240236394 AtPMS1//CHMP1A//EMB1611 GO:0042221 response to chemical BP 0.0201403278016686 CYT1//AT2G41620//ATMYB12//ARF7//ASUS1//COPT5//AT5G08300//DOT2//EMB2782//AT5G26010//AT5G24810//AT5G64100//AAP4//SRO5//PDCB1//ATNMT1//ATEXO70F1//SLY2//BSK2//ATH3//ASFT//AtNIT4//ATCHS//ATRBOHA//LECRKA4.2//ARGOS//BOP1//AT3G55410//CYP94B3//AT4G38410//KAI2//AT4G30670//ATVLN4//ACBP2//ATCBF3//AT4G22530//CRK28//ATIRT1//ATGRP2//AtSFR6//AtPMS1//AtWRKY47//ADR1//ATCOX17//ATPUB9//ATGSTU8//AHP4//AT1G52200//NRT1.5//UBC29//ALS3//PAG1//AT2G23910//PSAP//ABCB4//ATPP2-A3//AT2G30810//EMB1611//ATOFP2//ATGRP23 GO:0050826 response to freezing BP 0.0203546630419649 AT2G41620//DOT2//AtPMS1//EMB1611 GO:0009734 auxin-activated signaling pathway BP 0.0212623395274018 ATH3//NRT1.5//ABCB4 GO:0010072 primary shoot apical meristem specificat... BP 0.0212623395274018 AtPMS1//ATWOX14//EMB1611 GO:0006506 GPI anchor biosynthetic process BP 0.02458992593134 SETH2//AT1G11880 GO:0017004 cytochrome complex assembly BP 0.02458992593134 ABCI2//EMB3121 GO:0019375 galactolipid biosynthetic process BP 0.025574879153567 ASUS1//AT5G09570//AT3G23870//ATSPS3F GO:0000041 transition metal ion transport BP 0.0270994479672509 COPT5//AT5G26010//AT5G24580//AT4G30670//ATIRT1//ATCOX17//NRT1.5//ATPP2-A3 GO:0019374 galactolipid metabolic process BP 0.0274776487930065 ASUS1//AT5G09570//AT3G23870//ATSPS3F GO:0010106 cellular response to iron ion starvation BP 0.0289528428232419 AT5G26010//AT4G30670//ATIRT1//NRT1.5//ATPP2-A3 GO:0009958 positive gravitropism BP 0.0295651039904476 GLV3//MEL4 GO:0009308 amine metabolic process BP 0.0296648640460232 ATSPDS3//AT5G19240//ATIPT5//AtPMS1//ATWOX14//AT1G52200//NRT1.5 GO:0090421 embryonic meristem initiation BP 0.031999519886647 AtPMS1//ATWOX14//EMB1611 GO:0006826 iron ion transport BP 0.0322373334086911 AT5G26010//AT4G30670//ATIRT1//NRT1.5//ATPP2-A3 GO:0015698 inorganic anion transport BP 0.0347891046796606 AT5G26010//AT5G64100//ASFT//AT4G30670//ATIRT1//AtWRKY47//AT1G52200//NRT1.5//ATPP2-A3 GO:0048598 embryonic morphogenesis BP 0.0349018075169612 DOT2//ATNMT1 GO:0008284 positive regulation of cell proliferatio... BP 0.0350505406532586 GLV3//UNE6//ATCUL3 GO:0010074 maintenance of meristem identity BP 0.0350505406532586 AT2G41620//NSN1//EMB1611 GO:0048508 embryonic meristem development BP 0.0350505406532586 AtPMS1//ATWOX14//EMB1611 GO:0071365 cellular response to auxin stimulus BP 0.0350505406532586 ATH3//NRT1.5//ABCB4 GO:0009756 carbohydrate mediated signaling BP 0.0359173041175693 AT2G41620//DOT2//AtPMS1//EMB1611 GO:0010182 sugar mediated signaling pathway BP 0.0359173041175693 AT2G41620//DOT2//AtPMS1//EMB1611 GO:0051235 maintenance of location BP 0.0382361390588759 AT2G41620//DOT2//AtPMS1//EMB1611 GO:0010154 fruit development BP 0.038381812126254 AT2G41620//DOT2//PDCB1//ELL1//CYP94B3//ATHD2A//AtDOF4.4//AtPMS1//ATWOX14//CHMP1A//emb1507//ATCUL3//EMB1611 GO:0006505 GPI anchor metabolic process BP 0.0405789821041954 SETH2//AT1G11880 GO:0009636 response to toxic substance BP 0.0405789821041954 ATH3//AtNIT4 GO:0046834 lipid phosphorylation BP 0.0405789821041954 AT5G04980//ATPI4K GO:0046854 phosphatidylinositol phosphorylation BP 0.0405789821041954 AT5G04980//ATPI4K GO:0006508 proteolysis BP 0.0407680694402961 CYT1//UCH3//AT1G44130//AT5G08300//AtMC3//AT5G60190//ATNMT1//AT5G56350//AT5G10770//AT5G05050//GAMMA-VPE//ATGSTU8//AT1G32970//ATCUL3//UBC29//AT2G07240//PAG1//ABCB4 GO:0009966 regulation of signal transduction BP 0.04143490097807 SLY2//REN1//AtSFR6//AHP4//ABCB4 GO:0023051 regulation of signaling BP 0.0434461149684639 SLY2//REN1//AtSFR6//AHP4//ABCB4 GO:0010053 root epidermal cell differentiation BP 0.0440437825538618 ATATP-PRT1//AGP14//AT4G30670//ATVLN4//ATIRT1//AtSFR6//IDL1//GCS1//ABCB4 GO:0009690 cytokinin metabolic process BP 0.0450664010948113 ATIPT5//AtPMS1//ATWOX14 GO:0006869 lipid transport BP 0.0455151188838129 ACBP2//AT2G22050//AT1G68710//ATNHX5//AT2G10940 GO:0009630 gravitropism BP 0.0455151188838129 ARF7//GLV3//MEL4//ATCUL3//ABCB4 GO:0010646 regulation of cell communication BP 0.0455151188838129 SLY2//REN1//AtSFR6//AHP4//ABCB4 GO:0010629 negative regulation of gene expression BP 0.0456415990363964 AT2G41620//DOT2//EMB2782//AT5G09570//AT3G42660//AtPMS1//AT3G23870//AT3G16780//NSN1//RIP4//EMB1611//ATOFP2 GO:0051179 localization BP 0.0457495154180239 ABCI2//AT2G41620//COPT5//DOT2//AT5G26010//AT5G64100//AAP4//PDCB1//AT5G56350//PM-ANT//AT5G54910//ATEXO70F1//AT5G42420//ASFT//AT5G39990//AT5G24580//ATCHS//PUT3//ADR1-L2//ATVPS33//AT3G43270//ATNST-KT1//AT4G34910//GAMMA-VPE//AT4G30670//ATVLN4//ACBP2//ATIRT1//AT4G09930//AtPMS1//AtWRKY47//AT1G20760//GLV3//ATCOX17//AT2G22050//AT3G25260//AT3G03330//AT1G77610//AT1G52200//NRT1.5//AT1G14560//AT1G06890//AT1G21380//AT1G29310//ATSYTB//SIAR1//AT1G68710//CHMP1A//ATNHX5//ATNAT8//ATCHX15//AT2G21520//AT2G01970//AT2G10940//PAG1//ABCB4//ATPP2-A3//EMB1611//CAT5 GO:0044699 single-organism process BP 0.0460591345465642 ABCI2//CYT1//AT2G41620//PGSIP8//ATATP-PRT1//ARF7//ASUS1//COPT5//AT5G08300//DOT2//EMB2782//AT5G26010//AT5G24810//ATFKBP12//AT5G64100//AAP4//ANAC100//PDCB1//COBL5//PSY1//ATNMT1//AGP14//AT5G56350//PM-ANT//AT5G54910//ATEXO70F1//AtAUG3//SLY2//BSK2//ATH3//AT5G42420//ASFT//SDH2-2//AT5G39990//AT5G24580//AT5G19240//AtNIT4//ATIPT5//AT5G18640//ATCHS//AT5G09570//ATRBOHA//PUT3//AT5G04980//ADR1-L2//LECRKA4.2//ARGOS//AT3G57220//BOP1//AT3G55410//AT3G55420//ATVPS33//ELL1//AT3G50880//AtWDR5a//CYP94B3//AT3G46220//SETH2//ATHD2A//AT3G44400//AT3G43270//AT3G42660//ATNST-KT1//KAI2//AT4G34910//GAMMA-VPE//AT4G30670//ATVLN4//MTO2//ACBP2//AT4G26650//REN1//AT4G22530//INP1//CRK28//ARK3//AtDOF4.4//ATIRT1//ATGRP2//AT4G10930//AtSFR6//AtPMS1//AtWRKY47//AT2G33630//ATWOX14//AT1G20760//AT1G18130//AT3G66652//GLV3//IDL1//AT3G23870//ATCOX17//AtRLP41//AT2G22050//AT3G25260//AT-HSFC1//AT3G16780//NSN1//RPL18//ATGSTU8//AT3G03330//UNE6//AHP4//AT1G77610//AT1G77600//AT1G52200//ARC12//NRT1.5//AT1G14560//RIP4//AT1G06890//AT1G21380//AT1G29310//HEI10//ATSMO1//ATSPS3F//ATSYTB//SIAR1//AT1G80950//AT1G33670//ATGSTF4//AT1G68710//CHMP1A//AT1G34200//AT1G28600//emb1507//ATNHX5//ATNAT8//ATPI4K//ATCUL3//AT1G31150//ATCHX15//GCS1//EIF2//AT1G11880//ATGUT1//UBC29//AT2G10940//AT2G37810//SAG13//PAG1//AT2G23910//PSAP//ABCB4//ATPP2-A3//CYCP4;1//ELF4//EMB1611//CAT5//ATOFP2 GO:0090627 plant epidermal cell differentiation BP 0.0465929332238234 ATATP-PRT1//AGP14//AT4G30670//ATVLN4//ATIRT1//AtSFR6//IDL1//GCS1//ABCB4 GO:0007126 meiotic nuclear division BP 0.0478956670950615 AT2G41620//ATIPT5//AtPMS1//AT3G66652//HEI10//emb1507 GO:0071322 cellular response to carbohydrate stimul... BP 0.0483511410137085 AT2G41620//DOT2//AtPMS1//EMB1611 GO:1901698 response to nitrogen compound BP 0.0484858270282881 CYT1//EMB2782//AT5G26010//AT5G64100//SRO5//ASFT//AtNIT4//LECRKA4.2//CYP94B3//AT4G30670//AT4G22530//CRK28//ATIRT1//AtPMS1//AtWRKY47//AT1G52200//NRT1.5//ATPP2-A3 GO:0043248 proteasome assembly BP 0.0497555315424123 AT5G08300//ATNMT1//ATGSTU8//UBC29//PAG1//ABCB4 GO:0051788 response to misfolded protein BP 0.0497555315424123 AT5G08300//ATNMT1//ATGSTU8//UBC29//PAG1//ABCB4 GO:0019827 stem cell maintenance BP 0.0524462288453867 AT2G41620//NSN1//EMB1611 GO:0009845 seed germination BP 0.0536071035751107 AT2G41620//DOT2//LECRKA4.2//ATGRP2//AtPMS1//EMB1611 GO:0048285 organelle fission BP 0.0536899280382288 AT2G41620//ATIPT5//AtPMS1//AT3G66652//AT1G77600//ARC12//HEI10//emb1507 GO:0009798 axis specification BP 0.0563410129596655 BOP1//ATHD2A//CHMP1A GO:0048864 stem cell development BP 0.0563410129596655 AT2G41620//NSN1//EMB1611 GO:0009606 tropism BP 0.0591490596034475 ARF7//GLV3//MEL4//ATCUL3//ABCB4 GO:0034754 cellular hormone metabolic process BP 0.0591490596034475 AT5G19240//ATIPT5//AtPMS1//ATWOX14//AT1G52200 GO:0006897 endocytosis BP 0.0594549211738068 AT4G09930//ATPP2-A3 GO:0006904 vesicle docking involved in exocytosis BP 0.0594549211738068 ATEXO70F1//ATVPS33 GO:0022406 membrane docking BP 0.0594549211738068 ATEXO70F1//ATVPS33 GO:0048278 vesicle docking BP 0.0594549211738068 ATEXO70F1//ATVPS33 GO:0009926 auxin polar transport BP 0.0603693703486324 ATCHS//GLV3//ABCB4 GO:0045596 negative regulation of cell differentiat... BP 0.0603693703486324 AT2G41620//NSN1//EMB1611 GO:0048863 stem cell differentiation BP 0.0603693703486324 AT2G41620//NSN1//EMB1611 GO:0006810 transport BP 0.061039713557969 ABCI2//AT2G41620//COPT5//AT5G26010//AT5G64100//AAP4//AT5G56350//PM-ANT//AT5G54910//ATEXO70F1//AT5G42420//ASFT//AT5G39990//AT5G24580//ATCHS//PUT3//ADR1-L2//ATVPS33//AT3G43270//ATNST-KT1//AT4G34910//GAMMA-VPE//AT4G30670//ATVLN4//ACBP2//ATIRT1//AT4G09930//AtWRKY47//GLV3//ATCOX17//AT2G22050//AT3G25260//AT3G03330//AT1G77610//AT1G52200//NRT1.5//AT1G14560//AT1G06890//AT1G21380//AT1G29310//ATSYTB//SIAR1//AT1G68710//CHMP1A//ATNHX5//ATNAT8//ATCHX15//AT2G21520//AT2G01970//AT2G10940//PAG1//ABCB4//ATPP2-A3//EMB1611//CAT5 GO:0048831 regulation of shoot system development BP 0.0623670320888094 AT2G41620//DOT2//SLY2//AT3G42660//AtDOF4.4//AtPMS1//ATCUL3//ELF4//EMB1611 GO:0043933 macromolecular complex subunit organizat... BP 0.0647319900940284 ABCI2//PSBI//AT5G08300//DOT2//ATNMT1//ATH3//AT3G42660//ATVLN4//ATGRP2//AtSFR6//AtPMS1//EMB3121//AT3G16780//ATGSTU8//RIP4//ATSMO1//AT1G31150//UBC29//PAG1//PSAP//ABCB4//EMB1611 GO:0090351 seedling development BP 0.0662232958451736 AT2G41620//DOT2//LECRKA4.2//ATGRP2//AtPMS1//EMB1611 GO:0006887 exocytosis BP 0.066299424259214 ATEXO70F1//ATVPS33 GO:0009875 pollen-pistil interaction BP 0.066299424259214 REN1//ARK3 GO:0045892 negative regulation of transcription, DN... BP 0.0671959476384908 AT2G41620//DOT2//AT5G09570//AT3G23870//AT3G16780//NSN1//RIP4//EMB1611//ATOFP2 GO:0051253 negative regulation of RNA metabolic pro... BP 0.0671959476384908 AT2G41620//DOT2//AT5G09570//AT3G23870//AT3G16780//NSN1//RIP4//EMB1611//ATOFP2 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0671959476384908 AT2G41620//DOT2//AT5G09570//AT3G23870//AT3G16780//NSN1//RIP4//EMB1611//ATOFP2 GO:1903507 negative regulation of nucleic acid-temp... BP 0.0671959476384908 AT2G41620//DOT2//AT5G09570//AT3G23870//AT3G16780//NSN1//RIP4//EMB1611//ATOFP2 GO:0010015 root morphogenesis BP 0.0678740104863289 ATATP-PRT1//ARF7//AGP14//AT4G30670//ATVLN4//ATIRT1//AtSFR6//IDL1//GCS1//ABCB4 GO:0034220 ion transmembrane transport BP 0.0684812291148988 COPT5//ATIRT1//AT1G77610//ATNHX5//ATCHX15//CAT5 GO:1902589 single-organism organelle organization BP 0.0714531571229619 AT2G41620//DOT2//EMB2782//AtAUG3//ATIPT5//AT3G42660//ATVLN4//ACBP2//AtSFR6//AtPMS1//AT3G66652//AT3G16780//AT3G03330//AT1G77600//RIP4//HEI10//ATNHX5//AT1G31150//EMB1611 GO:0051234 establishment of localization BP 0.0715154544790035 ABCI2//AT2G41620//COPT5//AT5G26010//AT5G64100//AAP4//AT5G56350//PM-ANT//AT5G54910//ATEXO70F1//AT5G42420//ASFT//AT5G39990//AT5G24580//ATCHS//PUT3//ADR1-L2//ATVPS33//AT3G43270//ATNST-KT1//AT4G34910//GAMMA-VPE//AT4G30670//ATVLN4//ACBP2//ATIRT1//AT4G09930//AtWRKY47//GLV3//ATCOX17//AT2G22050//AT3G25260//AT3G03330//AT1G77610//AT1G52200//NRT1.5//AT1G14560//AT1G06890//AT1G21380//AT1G29310//ATSYTB//SIAR1//AT1G68710//CHMP1A//ATNHX5//ATNAT8//ATCHX15//AT2G21520//AT2G01970//AT2G10940//PAG1//ABCB4//ATPP2-A3//EMB1611//CAT5