GOID	TERM	ONTOLOGY	pValue	Genes
GO:0031425	chloroplast RNA processing	BP	0.000374375686546599	OTP84//CRR2//OTP81
GO:0071901	negative regulation of protein serine/th...	BP	0.00318364563007526	CYCD3;3//ICK3//DSPTP1E
GO:0006469	negative regulation of protein kinase ac...	BP	0.00367349609713937	CYCD3;3//ICK3//DSPTP1E
GO:0033673	negative regulation of kinase activity	BP	0.00367349609713937	CYCD3;3//ICK3//DSPTP1E
GO:0051348	negative regulation of transferase activ...	BP	0.00367349609713937	CYCD3;3//ICK3//DSPTP1E
GO:0001933	negative regulation of protein phosphory...	BP	0.00420688055649241	CYCD3;3//ICK3//DSPTP1E
GO:0042326	negative regulation of phosphorylation	BP	0.00420688055649241	CYCD3;3//ICK3//DSPTP1E
GO:0010563	negative regulation of phosphorus metabo...	BP	0.00478490145228282	CYCD3;3//ICK3//DSPTP1E
GO:0031400	negative regulation of protein modificat...	BP	0.00478490145228282	CYCD3;3//ICK3//DSPTP1E
GO:0045936	negative regulation of phosphate metabol...	BP	0.00478490145228282	CYCD3;3//ICK3//DSPTP1E
GO:0046148	pigment biosynthetic process	BP	0.0134816777524314	AT5G64150//APT5//GSA2//UGT84A2//ATHST//AT1G56050//ATSULA//AT2G32640
GO:0090305	nucleic acid phosphodiester bond hydroly...	BP	0.0157419074782129	ATDUF9//ATSRS2//DAL//MER3
GO:0006725	cellular aromatic compound metabolic pro...	BP	0.0168350789004883	bHLH104//NRPE7//AT5G64150//AT5G60990//ANQ1//OVA6//CBF4//AT5G50000//AT5G48220//ATUK/UPRT1//ATDUF9//ATTERC//AT5G10960//APT5//AT3G63510//AT3G61240//NTT//OTP84//CYCD3;3//GSA2//CRR2//HISN7//ATSRS2//AT4G24810//ARF9//AT4G21820//AT-HSFB2B//AT4G11190//DAL//ATLAC1//ICK3//ATCM1//XRCC4//UGT84A2//MER3//AT-HSFA6B//AT3G14330//AT3G07670//AT1G56345//AT1G26460//AT1G56050//AT1G23410//EMA1//BBX18//ATSULA//CYP702A1//AT1G09730//AT2G17360//AT2G25830//OTP81//AT2G30050//ATWHY3
GO:1901360	organic cyclic compound metabolic proces...	BP	0.017525549690302	bHLH104//NRPE7//AT5G64150//AT5G60990//ANQ1//OVA6//CBF4//AT5G50000//AT5G48220//ATUK/UPRT1//ATDUF9//CYP724A1//ATTERC//AT5G10960//APT5//AT3G63510//AT3G61240//NTT//OTP84//CYCD3;3//GSA2//CRR2//HISN7//ATSRS2//AT4G24810//ARF9//AT4G21820//AT-HSFB2B//AT4G11190//DAL//ATLAC1//ICK3//ATCM1//XRCC4//UGT84A2//MER3//AT-HSFA6B//AT3G14330//AT3G07670//AT1G56345//AT2G43420//AT1G26460//AT1G56050//AT1G23410//EMA1//BBX18//ATSULA//CYP702A1//AT1G09730//AT2G17360//AT2G25830//OTP81//AT2G30050//ATWHY3
GO:0032269	negative regulation of cellular protein ...	BP	0.018007523064132	CYCD3;3//ICK3//DSPTP1E
GO:0051248	negative regulation of protein metabolic...	BP	0.018007523064132	CYCD3;3//ICK3//DSPTP1E
GO:0071900	regulation of protein serine/threonine k...	BP	0.018007523064132	CYCD3;3//ICK3//DSPTP1E
GO:0045736	negative regulation of cyclin-dependent ...	BP	0.0182874966692203	CYCD3;3//ICK3
GO:0043549	regulation of kinase activity	BP	0.0193391607543254	CYCD3;3//ICK3//DSPTP1E
GO:0045859	regulation of protein kinase activity	BP	0.0193391607543254	CYCD3;3//ICK3//DSPTP1E
GO:0010020	chloroplast fission	BP	0.0208943583809068	ARC1//ATSULA
GO:0043572	plastid fission	BP	0.0208943583809068	ARC1//ATSULA
GO:0042542	response to hydrogen peroxide	BP	0.0212030936044354	CPR5//AT-HSFB2B//AT1G56345//AT2G43630
GO:0001932	regulation of protein phosphorylation	BP	0.0221618017829215	CYCD3;3//ICK3//DSPTP1E
GO:0051338	regulation of transferase activity	BP	0.0221618017829215	CYCD3;3//ICK3//DSPTP1E
GO:0042325	regulation of phosphorylation	BP	0.0251971640850271	CYCD3;3//ICK3//DSPTP1E
GO:0008610	lipid biosynthetic process	BP	0.0260702607597206	DGS1//AT2353//AT5G50000//KCS21//CYP724A1//DGAT2//AtLpxD1//CP33//AT3G29430//ATHST//AT3G07670//AT2G43420//FTM1//ATSULA//DSPTP1E//AT2G32640
GO:0034641	cellular nitrogen compound metabolic pro...	BP	0.0291124542974661	bHLH104//NRPE7//ASN2//AT5G64150//AT5G60990//ANQ1//OVA6//CBF4//AT5G50000//AT5G48220//ATUK/UPRT1//ATDUF9//ATTERC//AT5G10960//APT5//AT3G63510//AT3G61240//NTT//OTP84//CYCD3;3//GSA2//CRR2//HISN7//ATSRS2//AT4G24810//ARF9//AT4G21820//AT-HSFB2B//DAL//ICK3//XRCC4//MER3//AT-HSFA6B//AT3G14330//AT3G07670//AT1G56345//AT1G26460//AT1G56050//AT1G23410//EMA1//BBX18//ATSULA//CYP702A1//AT1G09730//AT2G17360//AT2G25830//OTP81//AT2G30050//ATWHY3
GO:0009668	plastid membrane organization	BP	0.0324088626742862	OVA6//ATTERC//DAL//CP33//AT3G07670//ATSULA
GO:0010027	thylakoid membrane organization	BP	0.0324088626742862	OVA6//ATTERC//DAL//CP33//AT3G07670//ATSULA
GO:0042440	pigment metabolic process	BP	0.0328365642279515	AT5G64150//APT5//GSA2//UGT84A2//ATHST//AT1G56050//ATSULA//AT2G32640
GO:0042138	meiotic DNA double-strand break formatio...	BP	0.0337128313597561	ATDUF9//ATSRS2//MER3
GO:0044711	single-organism biosynthetic process	BP	0.0342351826046273	DGS1//ASN2//AT5G64150//AT5G60990//AT2353//AT5G50000//KCS21//ATUK/UPRT1//CYP724A1//ATTERC//APT5//AT3G61240//DGAT2//CYCD3;3//GSA2//HISN7//AT4G11190//AtLpxD1//DAL//CP33//AT3G29430//ICK3//ATCM1//UGT84A2//ATHST//AT3G07670//AT2G43420//FTM1//AT1G26460//AT1G56050//AT1G23410//EMA1//BBX18//ATSULA//DSPTP1E//AT1G09390//CYP702A1//AT2G25830//AT2G32640
GO:0006783	heme biosynthetic process	BP	0.0360004042229293	AT5G64150//AT1G56050
GO:0007568	aging	BP	0.037486558013826	AtLARP1b//CPR5//AT2G40760
GO:0046483	heterocycle metabolic process	BP	0.0405722098311367	bHLH104//NRPE7//AT5G64150//AT5G60990//ANQ1//OVA6//CBF4//AT5G50000//AT5G48220//ATUK/UPRT1//ATDUF9//ATTERC//AT5G10960//APT5//AT3G63510//AT3G61240//NTT//OTP84//CYCD3;3//GSA2//CRR2//HISN7//ATSRS2//AT4G24810//ARF9//AT4G21820//AT-HSFB2B//DAL//ICK3//XRCC4//MER3//AT-HSFA6B//AT3G14330//AT3G07670//AT1G56345//AT1G26460//AT1G56050//AT1G23410//EMA1//BBX18//ATSULA//CYP702A1//AT1G09730//AT2G17360//AT2G25830//OTP81//AT2G30050//ATWHY3
GO:0042168	heme metabolic process	BP	0.0465550599639638	AT5G64150//AT1G56050
GO:0006629	lipid metabolic process	BP	0.0499199936784654	DGS1//AT2353//AT5G50000//KCS21//CYP724A1//DGAT2//HISN7//AtLpxD1//CP33//AT3G29430//ATHST//AT3G07670//AT2G43420//FTM1//AT1G20135//GLIP2//ATSULA//DSPTP1E//AT1G09390//AT2G32640
GO:0009644	response to high light intensity	BP	0.0502756827100733	CPR5//AT-HSFB2B//AT1G56345//AT2G43630
GO:0010150	leaf senescence	BP	0.0502956489044455	AtLARP1b//CPR5
GO:1901661	quinone metabolic process	BP	0.0541405864670703	AT3G29430//ATHST
GO:1901663	quinone biosynthetic process	BP	0.0541405864670703	AT3G29430//ATHST
GO:0009658	chloroplast organization	BP	0.0550375273190038	OVA6//ATTERC//ARC1//DAL//AT3G07670//ATSULA
GO:0042181	ketone biosynthetic process	BP	0.0580859162636574	AT3G29430//ATHST
GO:0000302	response to reactive oxygen species	BP	0.0592083726906518	CPR5//AT-HSFB2B//AT1G56345//AT2G43630//LCD1
GO:0043086	negative regulation of catalytic activit...	BP	0.0618607077970716	CYCD3;3//ICK3//DSPTP1E
GO:0045786	negative regulation of cell cycle	BP	0.0621277761889021	CYCD3;3//ICK3
GO:0010260	organ senescence	BP	0.0662623965061178	AtLARP1b//CPR5
GO:0010440	stomatal lineage progression	BP	0.0704860979686884	CYCD3;3//ICK3
GO:0009072	aromatic amino acid family metabolic pro...	BP	0.0716307251225187	AT5G48220//GSA2//ATCM1//CYP702A1//AT2G25830
GO:0006302	double-strand break repair	BP	0.0721664943123679	ATDUF9//XRCC4//MER3
GO:0044092	negative regulation of molecular functio...	BP	0.0748560550947487	CYCD3;3//ICK3//DSPTP1E
GO:0000079	regulation of cyclin-dependent protein s...	BP	0.0791864687674495	CYCD3;3//ICK3
GO:0009968	negative regulation of signal transducti...	BP	0.0791864687674495	GLIP2//DSPTP1E
GO:0010648	negative regulation of cell communicatio...	BP	0.0791864687674495	GLIP2//DSPTP1E
GO:0016926	protein desumoylation	BP	0.0791864687674495	DGS1//AT1G09730
GO:0023057	negative regulation of signaling	BP	0.0791864687674495	GLIP2//DSPTP1E
GO:0044710	single-organism metabolic process	BP	0.0821667992183847	DGS1//ASN2//AT5G64150//AT5G60990//AtGulLO4//OVA6//AT2353//AT5G50000//KCS21//AT5G48220//ATUK/UPRT1//ATDUF9//CYP724A1//ATTERC//APT5//AT3G63510//AT3G61240//DGAT2//CYCD3;3//GSA2//CRR2//HISN7//ATSRS2//AT4G21820//AT4G11190//AtLpxD1//DAL//ATLAC1//CP33//AT3G29430//ICK3//CYP71B24//ATCM1//XRCC4//UGT84A2//MER3//AT-HSFA6B//ATHST//AT3G07670//AT1G71500//AT2G43420//AT1G48070//FTM1//AT1G26460//AT1G20135//AT1G56050//CYP71A18//AT1G23410//GLIP2//EMA1//BBX18//ATSULA//DSPTP1E//AT1G09390//AT1G05170//CYP702A1//HCS1//AT2G06960//AT2G25830//AT2G30050//ATWHY3//AT2G32640
GO:0010605	negative regulation of macromolecule met...	BP	0.0830215424893678	CYCD3;3//CRR2//AT4G21820//AT-HSFB2B//ICK3//AT1G23410//EMA1//DSPTP1E
GO:0006139	nucleobase-containing compound metabolic...	BP	0.0852537392303682	bHLH104//NRPE7//AT5G60990//ANQ1//OVA6//CBF4//AT5G50000//ATUK/UPRT1//ATDUF9//ATTERC//AT5G10960//APT5//AT3G63510//AT3G61240//NTT//OTP84//CYCD3;3//GSA2//CRR2//ATSRS2//AT4G24810//ARF9//AT4G21820//AT-HSFB2B//DAL//ICK3//XRCC4//MER3//AT-HSFA6B//AT3G14330//AT3G07670//AT1G56345//AT1G26460//AT1G23410//EMA1//BBX18//ATSULA//AT1G09730//AT2G17360//OTP81//AT2G30050//ATWHY3
GO:0007062	sister chromatid cohesion	BP	0.0860485763173409	ATDUF9//ATSRS2//MER3
GO:0006807	nitrogen compound metabolic process	BP	0.0866391229763152	bHLH104//NRPE7//ASN2//AT5G64150//AT5G60990//ANQ1//OVA6//CBF4//AT5G50000//AT5G48220//ATUK/UPRT1//ATDUF9//ATTERC//AT5G10960//APT5//AT3G63510//AT3G61240//NTT//OTP84//CYCD3;3//GSA2//CRR2//HISN7//ATSRS2//AT4G24810//ARF9//AT4G21820//AT-HSFB2B//DAL//ICK3//ATCM1//XRCC4//MER3//AT-HSFA6B//AT3G14330//AT3G07670//AT1G56345//AT1G26460//AT1G56050//AT1G23410//EMA1//BBX18//ATSULA//CYP702A1//AT1G09730//AT2G17360//AT2G25830//OTP81//AT2G30050//ATWHY3
GO:0006312	mitotic recombination	BP	0.0882011952186176	ATDUF9//MER3
GO:0010050	vegetative phase change	BP	0.0882011952186176	ATUK/UPRT1//ETP2
GO:0061024	membrane organization	BP	0.0958629983120248	AT5G63710//OVA6//ATTERC//DAL//CP33//AT3G07670//ATSULA//AT2G30050
GO:0009642	response to light intensity	BP	0.0960161527743232	CPR5//AT-HSFB2B//AT1G56345//AT2G43630
GO:0010228	vegetative to reproductive phase transit...	BP	0.0982695908407533	DGS1//CPR5//OVA6//AT5G10960//ATSRS2//CP33
GO:0009073	aromatic amino acid family biosynthetic ...	BP	0.100968101331406	GSA2//ATCM1//AT2G25830
GO:0045132	meiotic chromosome segregation	BP	0.104069187864082	ATDUF9//ATSRS2//MER3
GO:0048285	organelle fission	BP	0.104368006570144	ATDUF9//ATSRS2//ARC1//MER3//ATSULA
GO:0044283	small molecule biosynthetic process	BP	0.104931742158722	ASN2//AT2353//AT5G50000//KCS21//ATUK/UPRT1//CYP724A1//GSA2//HISN7//AtLpxD1//AT3G29430//ATCM1//ATHST//FTM1//BBX18//AT1G09390//CYP702A1//AT2G25830
GO:0007131	reciprocal meiotic recombination	BP	0.107207734366439	ATDUF9//ATSRS2//MER3
GO:0035825	reciprocal DNA recombination	BP	0.107207734366439	ATDUF9//ATSRS2//MER3
GO:0022402	cell cycle process	BP	0.109780499827715	AT4G15830//ANQ1//ATDUF9//CYCD3;3//ATSRS2//AT4G21820//ICK3//MER3
GO:0007155	cell adhesion	BP	0.111943465126532	DGS1//FLA18
GO:0022610	biological adhesion	BP	0.111943465126532	DGS1//FLA18
GO:0008299	isoprenoid biosynthetic process	BP	0.112691450524063	AT2353//AtLpxD1//CP33//AT3G29430//ATHST//AT3G07670//ATSULA//AT2G32640
GO:0019220	regulation of phosphate metabolic proces...	BP	0.112825943074256	CYCD3;3//DAL//ICK3//DSPTP1E
GO:0051174	regulation of phosphorus metabolic proce...	BP	0.112825943074256	CYCD3;3//DAL//ICK3//DSPTP1E
GO:0007127	meiosis I	BP	0.113594415167366	ATDUF9//ATSRS2//MER3
GO:0016226	iron-sulfur cluster assembly	BP	0.113594415167366	OVA6//CP33//AT2G25830
GO:0031163	metallo-sulfur cluster assembly	BP	0.113594415167366	OVA6//CP33//AT2G25830
GO:0006974	cellular response to DNA damage stimulus	BP	0.116687854473331	ATDUF9//ATSRS2//XRCC4//MER3//ATWHY3
GO:0032268	regulation of cellular protein metabolic...	BP	0.120942793557259	ANQ1//CYCD3;3//DAL//ICK3//DSPTP1E
GO:0031399	regulation of protein modification proce...	BP	0.12297988656303	CYCD3;3//DAL//ICK3//DSPTP1E
GO:0051726	regulation of cell cycle	BP	0.123097452943556	ANQ1//CYCD3;3//AT4G21820//ICK3//MER3
GO:0010026	trichome differentiation	BP	0.123437829458794	DGS1//CPR5//ATMYC1
GO:0009902	chloroplast relocation	BP	0.126786362843079	ATTERC//DAL//AT3G07670
GO:0051667	establishment of plastid localization	BP	0.126786362843079	ATTERC//DAL//AT3G07670
GO:0019750	chloroplast localization	BP	0.130167402245051	ATTERC//DAL//AT3G07670
GO:0051644	plastid localization	BP	0.130167402245051	ATTERC//DAL//AT3G07670
GO:0051246	regulation of protein metabolic process	BP	0.131893922449054	ANQ1//CYCD3;3//DAL//ICK3//DSPTP1E
GO:0051656	establishment of organelle localization	BP	0.133580230148793	ATTERC//DAL//AT3G07670
GO:0006720	isoprenoid metabolic process	BP	0.134229734019248	AT2353//AtLpxD1//CP33//AT3G29430//ATHST//AT3G07670//ATSULA//AT2G32640
GO:0009067	aspartate family amino acid biosynthetic...	BP	0.137024127957235	ASN2//AT5G50000//ATUK/UPRT1
GO:0016109	tetraterpenoid biosynthetic process	BP	0.137024127957235	ATHST//ATSULA//AT2G32640
GO:0016117	carotenoid biosynthetic process	BP	0.137024127957235	ATHST//ATSULA//AT2G32640
GO:0031324	negative regulation of cellular metaboli...	BP	0.138784919074757	CYCD3;3//AT4G21820//AT-HSFB2B//ICK3//AT1G23410//DSPTP1E
GO:0006114	glycerol biosynthetic process	BP	0.141144258293252	501_
GO:0006144	purine nucleobase metabolic process	BP	0.141144258293252	413_