GOID	TERM	ONTOLOGY	pValue	Genes
GO:0050826	response to freezing	BP	0.0147131726625878	ATDCL4//MSI3//RST1//OLE3
GO:0000103	sulfate assimilation	BP	0.0163381944529315	APS3//APR2
GO:0045786	negative regulation of cell cycle	BP	0.016903764338493	ASF1A//ICK5//AT;CDKD;1
GO:0019915	lipid storage	BP	0.0224273493494434	ATDCL4//MSI3//RST1//OLE3
GO:0006508	proteolysis	BP	0.0256412829443083	AT4G15475//AT5G66960//ATUBC4//ATCTIMC//VPS35C//AT3G45310//AT4G22050//DER2.1//AT3G25960//scpl44//UBP11//AT1G24140//AT1G51320//AT2G07240//AT2G27630//UBC6
GO:0044257	cellular protein catabolic process	BP	0.0287522423850267	AT4G15475//ATUBC4//ATCTIMC//VPS35C//AT3G25960//FOLB1//UBP11//AT1G51320//AT2G27630//UBC6
GO:0009756	carbohydrate mediated signaling	BP	0.0306877855419336	ATDCL4//MSI3//RST1//OLE3
GO:0010182	sugar mediated signaling pathway	BP	0.0306877855419336	ATDCL4//MSI3//RST1//OLE3
GO:0006694	steroid biosynthetic process	BP	0.0327495998204756	APS3//SIR//AT2G33630//AT1G12230//ATKCR2//SQE2
GO:0045736	negative regulation of cyclin-dependent ...	BP	0.0335842149110199	ICK5//AT;CDKD;1
GO:0048235	pollen sperm cell differentiation	BP	0.0335842149110199	MAPKKK20//ATMGH3
GO:0051235	maintenance of location	BP	0.0337899243155813	ATDCL4//MSI3//RST1//OLE3
GO:0071322	cellular response to carbohydrate stimul...	BP	0.0337899243155813	ATDCL4//MSI3//RST1//OLE3
GO:0016126	sterol biosynthetic process	BP	0.0346797207477923	APS3//SIR//AT1G12230//ATKCR2//SQE2
GO:0030163	protein catabolic process	BP	0.0347528299626027	AT4G15475//ATUBC4//ATCTIMC//VPS35C//AT3G25960//FOLB1//UBP11//AT1G51320//AT2G27630//UBC6
GO:0016125	sterol metabolic process	BP	0.0386850248410215	APS3//SIR//AT1G12230//ATKCR2//SQE2
GO:0016567	protein ubiquitination	BP	0.0418410548720819	ATDCL4//AT5G65500//MSI3//RST1//OLE3//AtPUB4
GO:0009057	macromolecule catabolic process	BP	0.0428654473097124	AT4G15475//ATUBC4//ATCTIMC//VPS35C//AT3G25960//FOLB1//AT3G01810//LSF1//UBP11//AT1G51320//AT2G27630//UBC6
GO:1901701	cellular response to oxygen-containing c...	BP	0.0441122387086401	ATDCL4//MAPKKK19//LTI65//AT5G38820//BG3//AT3G54510//AT3G46630//MSI3//NINJA//RST1//OLE3//BZIP28//AtLEC1
GO:0051603	proteolysis involved in cellular protein...	BP	0.0451069862639803	AT4G15475//ATUBC4//ATCTIMC//VPS35C//AT3G25960//UBP11//AT1G51320//AT2G27630//UBC6
GO:0006511	ubiquitin-dependent protein catabolic pr...	BP	0.0464582269150969	AT4G15475//ATUBC4//ATCTIMC//VPS35C//UBP11//AT1G51320//AT2G27630//UBC6
GO:0008202	steroid metabolic process	BP	0.0496104897919884	APS3//SIR//AT2G33630//AT1G12230//ATKCR2//SQE2
GO:0019941	modification-dependent protein catabolic...	BP	0.0507068447057196	AT4G15475//ATUBC4//ATCTIMC//VPS35C//UBP11//AT1G51320//AT2G27630//UBC6
GO:0043632	modification-dependent macromolecule cat...	BP	0.0507068447057196	AT4G15475//ATUBC4//ATCTIMC//VPS35C//UBP11//AT1G51320//AT2G27630//UBC6
GO:0048232	male gamete generation	BP	0.0507156163502037	MAPKKK20//ATMGH3
GO:0055046	microgametogenesis	BP	0.0507156163502037	MAPKKK20//ATMGH3
GO:0006334	nucleosome assembly	BP	0.0512020034485121	ATMGH3//G-H2AX//HIS4
GO:0034728	nucleosome organization	BP	0.0512020034485121	ATMGH3//G-H2AX//HIS4
GO:0006333	chromatin assembly or disassembly	BP	0.0519523265134792	ATMGH3//ASF1A//G-H2AX//HIS4
GO:1901264	carbohydrate derivative transport	BP	0.0553969840707861	GTR1//ACD11
GO:0006857	oligopeptide transport	BP	0.0568372441218198	AT5G28470//GTR1//AT3G45690
GO:0015833	peptide transport	BP	0.0568372441218198	AT5G28470//GTR1//AT3G45690
GO:0071310	cellular response to organic substance	BP	0.0581062891596012	ATERF6//EIL2//ATDCL4//MAPKKK19//LTI65//AT5G46420//AT5G38820//BG3//AT3G54510//MSI3//NINJA//RST1//OLE3//BZIP28//AtLEC1//AT1G24140//ARR14
GO:0032446	protein modification by small protein co...	BP	0.0582130423451322	ATDCL4//AT5G65500//MSI3//RST1//OLE3//AtPUB4
GO:0065004	protein-DNA complex assembly	BP	0.059760750633644	ATMGH3//G-H2AX//HIS4
GO:0071824	protein-DNA complex subunit organization	BP	0.059760750633644	ATMGH3//G-H2AX//HIS4
GO:0009845	seed germination	BP	0.0609978306799342	ATDCL4//MSI3//RST1//OLE3//ARR14
GO:0006661	phosphatidylinositol biosynthetic proces...	BP	0.0649596616456208	AT5G40500//AT5G13470//AT3G52070//RTH
GO:0009414	response to water deprivation	BP	0.0662860571051242	AT5G26990//MAPKKK19//LTI65//MAPKKK20//AT3G46630//ESL1//HIS4
GO:0031497	chromatin assembly	BP	0.0721386247798432	ATMGH3//G-H2AX//HIS4
GO:0090351	seedling development	BP	0.0723972103542741	ATDCL4//MSI3//RST1//OLE3//ARR14
GO:0070887	cellular response to chemical stimulus	BP	0.0748953409458501	ATERF6//EIL2//ATDCL4//MAPKKK19//LTI65//AT5G46420//AT5G38820//BG3//AT3G54510//AT3G46630//MSI3//NINJA//RST1//OLE3//BZIP28//AtLEC1//AT1G24140//ARR14
GO:0009415	response to water	BP	0.0752398143732819	AT5G26990//MAPKKK19//LTI65//MAPKKK20//AT3G46630//ESL1//HIS4
GO:0009860	pollen tube growth	BP	0.0815573615042212	AT5G28470//NET2C//AT3G62640//ATMGH3//ARAC4//ATCHX15
GO:0010162	seed dormancy process	BP	0.0820752681705077	ATDCL4//MSI3//RST1//OLE3
GO:0022611	dormancy process	BP	0.0820752681705077	ATDCL4//MSI3//RST1//OLE3
GO:0042886	amide transport	BP	0.0821113208611364	AT5G28470//GTR1//AT3G45690
GO:0044265	cellular macromolecule catabolic process	BP	0.0854193671822841	AT4G15475//ATUBC4//ATCTIMC//VPS35C//AT3G25960//FOLB1//UBP11//AT1G51320//AT2G27630//UBC6
GO:0006323	DNA packaging	BP	0.0855610388818692	ATMGH3//G-H2AX//HIS4
GO:0010200	response to chitin	BP	0.0865444677975844	ATERF6//AtRLP52//BG3//AT3G10930//SKOR//BZIP28//AT1G24140
GO:0006301	postreplication repair	BP	0.0918624296258478	ATUBC4//UBC6
GO:0019722	calcium-mediated signaling	BP	0.0918624296258478	AtNek7//CBL8
GO:0006469	negative regulation of protein kinase ac...	BP	0.0975250840216704	ICK5//AT;CDKD;1
GO:0033673	negative regulation of kinase activity	BP	0.0975250840216704	ICK5//AT;CDKD;1
GO:0051348	negative regulation of transferase activ...	BP	0.0975250840216704	ICK5//AT;CDKD;1
GO:0071901	negative regulation of protein serine/th...	BP	0.0975250840216704	ICK5//AT;CDKD;1
GO:0043085	positive regulation of catalytic activit...	BP	0.0983344260323202	AT5G46420//AT5G05200//AT3G56010//LSF1
GO:0010243	response to organonitrogen compound	BP	0.100586504275262	ATERF6//AtRLP52//BG3//AT3G10930//SKOR//BZIP28//AT1G24140
GO:0044093	positive regulation of molecular functio...	BP	0.101180688098904	AT5G46420//AT5G05200//AT3G56010//LSF1
GO:0032870	cellular response to hormone stimulus	BP	0.102445998400032	ATERF6//EIL2//MAPKKK19//LTI65//AT5G38820//BG3//AT3G54510//NINJA//BZIP28//AtLEC1//ARR14
GO:0001933	negative regulation of protein phosphory...	BP	0.103283749713326	ICK5//AT;CDKD;1
GO:0042326	negative regulation of phosphorylation	BP	0.103283749713326	ICK5//AT;CDKD;1
GO:0000904	cell morphogenesis involved in different...	BP	0.103516134472082	AT5G28470//NET2C//AT3G62640//ATMGH3//ASF1A//ARAC4//ATCHX15//ATHB-15
GO:0007015	actin filament organization	BP	0.104064783856584	STY46//ARAC4//ATHB-15//PRF5
GO:0071495	cellular response to endogenous stimulus	BP	0.107931624578212	ATERF6//EIL2//MAPKKK19//LTI65//AT5G38820//BG3//AT3G54510//NINJA//BZIP28//AtLEC1//ARR14
GO:0010563	negative regulation of phosphorus metabo...	BP	0.109133081911629	ICK5//AT;CDKD;1
GO:0045936	negative regulation of phosphate metabol...	BP	0.109133081911629	ICK5//AT;CDKD;1
GO:0031400	negative regulation of protein modificat...	BP	0.115067897206498	ICK5//AT;CDKD;1
GO:1990267	response to transition metal nanoparticl...	BP	0.119202627709525	AT5G38820//ATCTIMC//ATWRKY61
GO:0035556	intracellular signal transduction	BP	0.119804589345389	ATERF6//EIL2//MAPKKK19//BG3//AtNek7//ARFC1//BZIP28//ARAC4//CBL8//ARR14
GO:1901700	response to oxygen-containing compound	BP	0.120109502480719	ATERF6//ATDCL4//AT5G26990//AtRLP52//MAPKKK19//AtHGO//LTI65//AT5G38820//BG3//AT3G54510//MAPKKK20//AT3G46630//MSI3//NINJA//AT3G10930//RST1//OLE3//SKOR//BZIP28//AT1G73980//AtLEC1//ESL1//AT1G24140//HSP70T-2//TPS10//HIS4//ACD11
GO:0016052	carbohydrate catabolic process	BP	0.120416288756718	SIR//ATCTIMC//AT3G25960//AT3G01810//LSF1//AT1G12230
GO:0009612	response to mechanical stimulus	BP	0.12108316950398	AtNek7//AT3G10930
GO:0009686	gibberellin biosynthetic process	BP	0.12108316950398	AT3G54510//ATGA20OX4
GO:0016102	diterpenoid biosynthetic process	BP	0.127174026056711	AT3G54510//ATGA20OX4
GO:0007165	signal transduction	BP	0.128025575992533	ATERF6//EIL2//ATDCL4//AtRLP52//MAPKKK19//LTI65//AT5G47440//BG3//AT3G54510//MSI3//NINJA//AtNek7//ARFC1//RST1//OLE3//BZIP28//AtLEC1//CLE9//ARAC4//CBL8//AT1G24140//ARR14
GO:0010431	seed maturation	BP	0.128443050427933	ATDCL4//MSI3//RST1//OLE3
GO:0015980	energy derivation by oxidation of organi...	BP	0.131358177025258	AT5G54980//ATCTIMC//AT1G12230
GO:0048868	pollen tube development	BP	0.13194511054939	AT5G28470//NET2C//AT3G62640//ATMGH3//ARAC4//ATCHX15
GO:0045229	external encapsulating structure organiz...	BP	0.132764654291894	NET2C//AT3G62640//AT3G60730//ATMGH3//AT3G01810//ACOS5//ARAC4//ATCHX15//LAP6//ATHB-15
GO:0000272	polysaccharide catabolic process	BP	0.133335743585744	AT3G01810//LSF1
GO:0010043	response to zinc ion	BP	0.133335743585744	ATCTIMC//ATWRKY61
GO:0010584	pollen exine formation	BP	0.133335743585744	ACOS5//LAP6
GO:0030036	actin cytoskeleton organization	BP	0.134881954824201	STY46//ARAC4//ATHB-15//PRF5
GO:0008610	lipid biosynthetic process	BP	0.13564606864495	APS3//AT5G40500//AT5G13470//SIR//AT3G56010//AT3G54510//AT3G52070//RTH//AT4G31050//AT2G33630//ATGA20OX4//AtLEC1//AT1G12230//ATKCR2//TPS10//SQE2//AT2G19320
GO:0009933	meristem structural organization	BP	0.136659729204994	ATDCL4//MSI3//RST1//OLE3//ATHB-15
GO:0009755	hormone-mediated signaling pathway	BP	0.137812276470244	ATERF6//EIL2//MAPKKK19//LTI65//BG3//AT3G54510//NINJA//BZIP28//AtLEC1//ARR14
GO:0010208	pollen wall assembly	BP	0.139563744491794	ACOS5//LAP6
GO:0010927	cellular component assembly involved in ...	BP	0.139563744491794	ACOS5//LAP6
GO:0019932	second-messenger-mediated signaling	BP	0.139563744491794	AtNek7//CBL8
GO:0085029	extracellular matrix assembly	BP	0.139563744491794	ACOS5//LAP6
GO:0046488	phosphatidylinositol metabolic process	BP	0.144781420585424	AT5G40500//AT5G13470//AT3G52070//RTH
GO:0048532	anatomical structure arrangement	BP	0.145002226240792	ATDCL4//MSI3//RST1//OLE3//ATHB-15
GO:0000079	regulation of cyclin-dependent protein s...	BP	0.145853593153921	ICK5//AT;CDKD;1
GO:0009685	gibberellin metabolic process	BP	0.145853593153921	AT3G54510//ATGA20OX4
GO:0009409	response to cold	BP	0.146015304513514	ATDCL4//LTI65//SIR//BG3//MAPKKK20//MSI3//RST1//OLE3//BZIP28
GO:0010440	stomatal lineage progression	BP	0.152200992313768	ICK5//AT;CDKD;1
GO:0016101	diterpenoid metabolic process	BP	0.152200992313768	AT3G54510//ATGA20OX4
GO:0009108	coenzyme biosynthetic process	BP	0.15840743891584	AT5G53920//AT4G31050//ACOS5//ATCOAE
GO:0050790	regulation of catalytic activity	BP	0.159066889059797	AT5G46420//AT5G05200//AT3G56010//ICK5//LSF1//AT;CDKD;1