marker gene list
| Imbibed 24 h ABA 30uM (seed) |
| Mutant phyB (Dark) |
･･･up requlated genes
･･･down regulated genes| probeID | AGICode | Annotation | gene expression |
|
|---|---|---|---|---|
| 1 | 265094_at | AT1G03890 | cupin family protein | 1.20 |
| 2 | 261080_at | AT1G07370 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor | -0.81 |
| 3 | 261197_at | AT1G12900 | GAPA-2; glyceraldehyde-3-phosphate dehydrogenase | -1.18 |
| 4 | 262829_at | AT1G14970 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01480.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77011.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42288.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) | -0.88 |
| 5 | 255761_at | AT1G16770 | similar to unnamed protein product [Vitis vinifera] (GB:CAO41707.1) | 2.17 |
| 6 | 262414_at | AT1G49430 | LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) | -0.85 |
| 7 | 261957_at | AT1G64660 | ATMGL; catalytic/ methionine gamma-lyase | 1.31 |
| 8 | 264213_at | AT1G65390 | ATPP2-A5; carbohydrate binding | -0.97 |
| 9 | 262290_at | AT1G70985 | hydroxyproline-rich glycoprotein family protein | 1.99 |
| 10 | 262177_at | AT1G74710 | ICS1 (ISOCHORISMATE SYNTHASEI); isochorismate synthase | -0.77 |
| 11 | 262176_at | AT1G74960 | FAB1 (FATTY ACID BIOSYNTHESIS 1); fatty-acid synthase | -0.78 |
| 12 | 260797_at | AT1G78390 | NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) | 1.44 |
| 13 | 267321_at | AT2G19320 | unknown protein | 2.81 |
| 14 | 266166_at | AT2G28080 | glycosyltransferase family protein | -0.80 |
| 15 | 267154_at | AT2G30870 | ATGSTF10 (EARLY DEHYDRATION-INDUCED 13); glutathione transferase | -0.87 |
| 16 | 267461_at | AT2G33830 | dormancy/auxin associated family protein | 1.60 |
| 17 | 266636_at | AT2G35370 | GDCH (Glycine decarboxylase complex H) | -0.78 |
| 18 | 267534_at | AT2G41900 | zinc finger (CCCH-type) family protein | -0.80 |
| 19 | 267393_at | AT2G44500 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15104.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) | -0.88 |
| 20 | 258911_at | AT3G06470 | GNS1/SUR4 membrane family protein | -1.16 |
| 21 | 256772_at | AT3G13750 | BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase | -0.78 |
| 22 | 256774_at | AT3G13760 | DC1 domain-containing protein | -0.98 |
| 23 | 258347_at | AT3G17520 | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | 1.17 |
| 24 | 256827_at | AT3G18570 | glycine-rich protein / oleosin | 2.28 |
| 25 | 257204_at | AT3G23805 | RALFL24 (RALF-LIKE 24) | -0.87 |
| 26 | 258240_at | AT3G27660 | OLEO4 (OLEOSIN4) | 1.39 |
| 27 | 252347_at | AT3G48130 | ribosomal protein L13 homolog | -1.32 |
| 28 | 255602_at | AT4G01026 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01360.1); similar to hypothetical protein [Arabidopsis suecica] (GB:BAF63139.1); contains domain SSF55961 (SSF55961) | 1.13 |
| 29 | 255550_at | AT4G01970 | ATSTS (ARABIDOPSIS THALIANA STACHYOSE SYNTHASE); galactinol-raffinose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds | 1.69 |
| 30 | 255048_at | AT4G09600 | GASA3 (GAST1 PROTEIN HOMOLOG 3) | 1.76 |
| 31 | 255049_at | AT4G09610 | GASA2 (GAST1 PROTEIN HOMOLOG 2) | 2.85 |
| 32 | 245485_at | AT4G16230 | GDSL-motif lipase/hydrolase family protein | -1.45 |
| 33 | 254580_at | AT4G19390 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63752.1); contains InterPro domain Uncharacterised conserved protein UCP022348 (InterPro:IPR016804); contains InterPro domain Protein of unknown function UPF0114 (InterPro:IPR005134) | 1.31 |
| 34 | 253238_at | AT4G34480 | glycosyl hydrolase family 17 protein | 1.11 |
| 35 | 253206_at | AT4G34640 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase | -0.98 |
| 36 | 250624_at | AT5G07330 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63060.1); similar to unknown [Xerophyta humilis] (GB:AAT45004.1) | 1.11 |
| 37 | 250503_at | AT5G09820 | plastid-lipid associated protein PAP / fibrillin family protein | -1.45 |
| 38 | 245981_at | AT5G13100 | oxidoreductase | -1.00 |
| 39 | 249123_at | AT5G43760 | beta-ketoacyl-CoA synthase, putative | -0.96 |
| 40 | 248912_at | AT5G45670 | GDSL-motif lipase/hydrolase family protein | -0.81 |
| 41 | 248915_at | AT5G45690 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47983.1); contains InterPro domain Protein of unknown function DUF1264 (InterPro:IPR010686) | 2.23 |
| 42 | 248186_at | AT5G53880 | similar to unknown [Populus trichocarpa] (GB:ABK92577.1) | -1.36 |
| 43 | 248188_at | AT5G54070 | AT-HSFA9 (ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9); DNA binding / transcription factor | 3.85 |
| 44 | 248200_at | AT5G54160 | ATOMT1 (O-METHYLTRANSFERASE 1) | -1.05 |
| 45 | 248096_at | AT5G55240 | caleosin-related family protein / embryo-specific protein, putative | 1.84 |
| 46 | 247435_at | AT5G62480 | ATGSTU9 (GLUTATHIONE S-TRANSFERASE TAU 9); glutathione transferase | 1.50 |
| 47 | 247172_at | AT5G65550 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | 1.66 |
| 48 | 247096_at | AT5G66430 | S-adenosyl-L-methionine:carboxyl methyltransferase family protein | 1.77 |
| 49 | 245024_at | ATCG00120 | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. | 1.32 |
| 50 | 245026_at | ATCG00140 | ATPase III subunit | 1.71 |
| 51 | 244973_at | ATCG00690 | Encodes photosystem II 5 kD protein subunit PSII-T. This is a plastid-encoded gene (PsbTc) which also has a nuclear-encoded paralog (PsbTn). | 2.13 |