marker gene list
Dark 40min pls UV-AB 5min
Mutant phyA (Red Light 1h)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 260904_at AT1G02450 NIMIN-1/NIMIN1; protein binding 2.41
2 260955_at AT1G06000 UDP-glucoronosyl/UDP-glucosyl transferase family protein 2.58
3 264467_at AT1G10140 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G58420.1); contains InterPro domain Uncharacterised conserved protein UCP031279 (InterPro:IPR016972) -0.83
4 259364_at AT1G13260 RAV1 (Related to ABI3/VP1 1); DNA binding / transcription factor -1.43
5 260741_at AT1G15040 glutamine amidotransferase-related -1.31
6 261766_at AT1G15580 IAA5 (indoleacetic acid-induced protein 5); transcription factor 2.19
7 261663_at AT1G18330 EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor 2.30
8 259479_at AT1G19020 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40966.1) 2.37
9 255742_at AT1G25560 AP2 domain-containing transcription factor, putative -1.10
10 261443_at AT1G28480 GRX480; thiol-disulfide exchange intermediate 3.07
11 260025_at AT1G30070 SGS domain-containing protein 2.86
12 261567_at AT1G33055 unknown protein -1.53
13 262236_at AT1G48330 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17580.1); similar to unknown [Populus trichocarpa] (GB:ABK96144.1) -0.90
14 263738_at AT1G60060 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40921.1); contains domain PTHR13902:SF3 (PTHR13902:SF3); contains domain PTHR13902 (PTHR13902) -1.51
15 261958_at AT1G64500 glutaredoxin family protein 3.02
16 261975_at AT1G64640 plastocyanin-like domain-containing protein -0.97
17 260167_at AT1G71970 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22680.1); similar to unknown [Populus trichocarpa] (GB:ABK94498.1) -1.11
18 260070_at AT1G73830 BEE3 (BR ENHANCED EXPRESSION 3); DNA binding / transcription factor -0.89
19 259977_at AT1G76590 zinc-binding family protein -0.86
20 262133_at AT1G78000 SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transmembrane transporter -0.81
21 260804_at AT1G78410 VQ motif-containing protein 4.89
22 260773_at AT1G78440 ATGA2OX1 (GIBBERELLIN 2-OXIDASE 1); gibberellin 2-beta-dioxygenase 2.92
23 263128_at AT1G78600 zinc finger (B-box type) family protein 2.29
24 266745_at AT2G02950 PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) 2.54
25 265499_at AT2G15480 UGT73B5 (UDP-GLUCOSYL TRANSFERASE 73B5); UDP-glycosyltransferase/ transferase, transferring glycosyl groups 2.27
26 265342_at AT2G18300 basic helix-loop-helix (bHLH) family protein -0.89
27 266946_at AT2G18890 protein kinase family protein -0.83
28 267336_at AT2G19310 similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to 18.5 kDa class I heat shock protein (HSP 18.5) (GB:P05478); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978) 2.15
29 263374_at AT2G20560 DNAJ heat shock family protein 2.37
30 265387_at AT2G20670 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69754.1); contains InterPro domain Protein of unknown function DUF506, plant (InterPro:IPR006502) -1.10
31 263739_at AT2G21320 zinc finger (B-box type) family protein 4.14
32 263796_at AT2G24540 AFR (ATTENUATED FAR-RED RESPONSE) 2.66
33 266656_at AT2G25900 ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor -0.85
34 266841_at AT2G26150 ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2); DNA binding / transcription factor 5.73
35 266832_at AT2G30040 MAPKKK14 (Mitogen-activated protein kinase kinase kinase 14); kinase 2.33
36 267516_at AT2G30520 RPT2 (ROOT PHOTOTROPISM 2); protein binding 2.78
37 267517_at AT2G30520 RPT2 (ROOT PHOTOTROPISM 2); protein binding 3.20
38 263252_at AT2G31380 STH (salt tolerance homologue); transcription factor/ zinc ion binding 2.73
39 266097_at AT2G37970 SOUL-1; binding 2.40
40 266873_at AT2G44740 CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase -0.96
41 266125_at AT2G45050 zinc finger (GATA type) family protein -0.97
42 263779_at AT2G46340 SPA1 (SUPPRESSOR OF PHYA-105 1); signal transducer 2.44
43 258497_at AT3G02380 COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding 2.85
44 258609_at AT3G02910 Identical to UPF0131 protein At3g02910 [Arabidopsis Thaliana] (GB:Q9M8T3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46720.1); similar to Os03g0854000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051934.1); similar to unknown [Picea sitchensis] (GB:ABK22133.1); contains InterPro domain Butirosin biosynthesis, BtrG-like (InterPro:IPR013024); contains InterPro domain Protein of unknown function UPF0131 (InterPro:IPR005347) 3.13
45 259332_at AT3G03830 auxin-responsive protein, putative -0.86
46 258742_at AT3G05800 transcription factor 2.31
47 256245_at AT3G12580 HSP70 (heat shock protein 70); ATP binding 3.04
48 257858_at AT3G12920 protein binding / zinc ion binding -0.97
49 256999_at AT3G14200 DNAJ heat shock N-terminal domain-containing protein 2.52
50 257229_at AT3G16490 IQD26 (IQ-domain 26); calmodulin binding -1.09
51 257932_at AT3G17040 HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding 2.24
52 258349_at AT3G17609 HYH (HY5-HOMOLOG); DNA binding / transcription factor 4.46
53 257262_at AT3G21890 zinc finger (B-box type) family protein 3.41
54 256766_at AT3G22231 PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) 3.20
55 258325_at AT3G22830 AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B); DNA binding / transcription factor 2.28
56 258321_at AT3G22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding 3.89
57 258133_at AT3G24500 ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor 2.80
58 252367_at AT3G48360 BT2 (BTB AND TAZ DOMAIN PROTEIN 2); protein binding / transcription factor/ transcription regulator -1.18
59 252356_at AT3G48370 transposable element gene -1.69
60 252319_at AT3G48710 GTP binding / RNA binding -0.85
61 252123_at AT3G51240 F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase 3.97
62 252118_at AT3G51400 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23715.1); contains InterPro domain Protein of unknown function DUF241, plant (InterPro:IPR004320) -0.89
63 251974_at AT3G53200 AtMYB27 (myb domain protein 27); DNA binding / transcription factor -1.45
64 251977_at AT3G53250 auxin-responsive family protein -2.15
65 251705_at AT3G56400 WRKY70 (WRKY DNA-binding protein 70); transcription factor 2.67
66 251374_at AT3G60390 HAT3 (homeobox-leucine zipper protein 3); transcription factor -1.45
67 251373_at AT3G60530 zinc finger (GATA type) family protein -0.91
68 251321_at AT3G61460 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding -0.81
69 255381_at AT4G03510 RMA1 (Ring finger protein with Membrane Anchor 1); protein binding / ubiquitin-protein ligase/ zinc ion binding -1.03
70 255177_at AT4G08040 ACS11 (1-Amino-cyclopropane-1-carboxylate synthase 11); 1-aminocyclopropane-1-carboxylate synthase 3.73
71 254954_at AT4G10910 unknown protein -1.64
72 254685_at AT4G13790 auxin-responsive protein, putative -1.40
73 245439_at AT4G16670 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39969.1); contains InterPro domain Pleckstrin-like, plant (InterPro:IPR013666); contains InterPro domain Protein of unknown function DUF828, plant (InterPro:IPR008546); contains InterPro domain Pleckstrin-like (InterPro:IPR001849) -1.25
74 245276_at AT4G16780 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / transcription factor -3.41
75 254573_at AT4G19420 pectinacetylesterase family protein -1.09
76 254193_at AT4G23870 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11020.1) -0.97
77 254075_at AT4G25470 CBF2 (FREEZING TOLERANCE QTL 4); DNA binding / transcription activator/ transcription factor 2.25
78 254066_at AT4G25480 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription activator/ transcription factor 3.71
79 253859_at AT4G27657 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27652.1) 2.59
80 253423_at AT4G32280 IAA29 (indoleacetic acid-induced protein 29); transcription factor -1.65
81 253317_at AT4G33960 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15830.1) -0.88
82 253155_at AT4G35720 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23717.1); contains InterPro domain Protein of unknown function DUF241, plant (InterPro:IPR004320) -0.97
83 253161_at AT4G35770 SEN1 (DARK INDUCIBLE 1) -0.98
84 253104_at AT4G36010 pathogenesis-related thaumatin family protein -1.32
85 253054_at AT4G37580 HLS1 (HOOKLESS 1); N-acetyltransferase -0.97
86 251058_at AT5G01790 unknown protein -1.14
87 251020_at AT5G02270 ATNAP9 (Non-intrinsic ABC protein 9) 3.67
88 251012_at AT5G02580 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55240.1); similar to hypothetical protein OsI_019565 [Oryza sativa (indica cultivar-group)] (GB:EAY98332.1); similar to Os05g0462000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055765.1); contains InterPro domain Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476) -2.03
89 250781_at AT5G05410 DREB2A (DRE-BINDING PROTEIN 2A); DNA binding / transcription activator/ transcription factor 2.34
90 250649_at AT5G06690 (THIOREDOXIN-LIKE 5); thiol-disulfide exchange intermediate -0.94
91 250550_at AT5G07870 transferase family protein 2.19
92 250420_at AT5G11260 HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor 2.94
93 246468_at AT5G17050 UDP-glucoronosyl/UDP-glucosyl transferase family protein 2.68
94 250012_x_at AT5G18060 auxin-responsive protein, putative -1.48
95 249983_at AT5G18470 curculin-like (mannose-binding) lectin family protein 2.51
96 249923_at AT5G19120 aspartic-type endopeptidase/ pepsin A -0.82
97 249918_at AT5G19240 Identical to Uncharacterized GPI-anchored protein At5g19240 precursor [Arabidopsis Thaliana] (GB:Q84VZ5;GB:Q8H7A4); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19230.1); similar to unknown [Populus trichocarpa] (GB:ABK94712.1) 2.35
98 249890_at AT5G22570 WRKY38 (WRKY DNA-binding protein 38); transcription factor 3.67
99 249862_at AT5G22920 zinc finger (C3HC4-type RING finger) family protein -1.04
100 249769_at AT5G24120 SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor 3.13
101 246966_at AT5G24850 CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding 2.54
102 246932_at AT5G25190 ethylene-responsive element-binding protein, putative -1.08
103 246926_at AT5G25240 similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G14890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67727.1) -1.09
104 246108_at AT5G28630 glycine-rich protein 2.47
105 249234_at AT5G42200 zinc finger (C3HC4-type RING finger) family protein -0.89
106 249063_at AT5G44110 POP1 4.01
107 254521_at AT5G44820 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46707.1); contains domain PTHR10483:SF6 (PTHR10483:SF6); contains domain PTHR10483 (PTHR10483) 2.17
108 248793_at AT5G47240 ATNUDT8 (Arabidopsis thaliana Nudix hydrolase homolog 8); hydrolase -1.34
109 248736_at AT5G48110 terpene synthase/cyclase family protein -0.82
110 248686_at AT5G48540 33 kDa secretory protein-related 2.23
111 248607_at AT5G49480 ATCP1 (CA2+-BINDING PROTEIN 1); calcium ion binding 2.21
112 248434_at AT5G51440 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) 3.62
113 248347_at AT5G52250 transducin family protein / WD-40 repeat family protein 2.87
114 248213_at AT5G53660 AtGRF7 (GROWTH-REGULATING FACTOR 7) -1.34
115 248208_at AT5G53980 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52); transcription factor -1.23
116 247947_at AT5G57090 EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin:hydrogen symporter/ transporter -1.39
117 247878_at AT5G57760 unknown protein -1.43
118 247778_at AT5G58750 wound-responsive protein-related 4.24
119 247780_at AT5G58770 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative 6.26
120 247533_at AT5G61570 protein kinase family protein -1.11
121 247323_at AT5G64170 dentin sialophosphoprotein-related 4.51
122 247159_at AT5G65800 ACS5 (ACC SYNTHASE 5); 1-aminocyclopropane-1-carboxylate synthase -1.14
123 247047_at AT5G66650 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22909.1); contains InterPro domain Protein of unknown function DUF607 (InterPro:IPR006769) -0.96
124 246997_at AT5G67390 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71983.1) -1.38