marker gene list
FarRed Light 4 h
Mutant phyA (Red Light 1h)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 259432_at AT1G01520 myb family transcription factor 1.32
2 264611_at AT1G04680 pectate lyase family protein -0.77
3 260784_at AT1G06180 ATMYB13 (myb domain protein 13); DNA binding / transcription factor 1.78
4 262626_at AT1G06430 FTSH8 (FtsH protease 8); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding 1.34
5 262634_at AT1G06690 aldo/keto reductase family protein 1.26
6 263207_at AT1G10550 XTH33 (xyloglucan:xyloglucosyl transferase 33); hydrolase, acting on glycosyl bonds -0.95
7 259537_at AT1G12370 PHR1 (PHOTOLYASE 1) 1.50
8 261766_at AT1G15580 IAA5 (indoleacetic acid-induced protein 5); transcription factor -1.90
9 262536_at AT1G17100 SOUL heme-binding family protein 1.83
10 261376_at AT1G18660 zinc finger (C3HC4-type RING finger) family protein 1.09
11 262853_at AT1G20890 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43758.1) 1.18
12 255969_at AT1G22330 RNA binding -1.02
13 262986_at AT1G23390 kelch repeat-containing F-box family protein -0.79
14 257506_at AT1G29440 auxin-responsive family protein -1.57
15 259787_at AT1G29460 auxin-responsive protein, putative -2.37
16 259773_at AT1G29500 auxin-responsive protein, putative -2.06
17 259783_at AT1G29510 SAUR68 (SMALL AUXIN UPREGULATED 68) -1.42
18 261804_at AT1G30530 UDP-glucoronosyl/UDP-glucosyl transferase family protein 1.46
19 256542_at AT1G42550 PMI1 (PLASTID MOVEMENT IMPAIRED1) 1.72
20 260727_at AT1G48100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein 1.53
21 262236_at AT1G48330 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17580.1); similar to unknown [Populus trichocarpa] (GB:ABK96144.1) -1.15
22 260152_at AT1G52830 IAA6 (indoleacetic acid-induced protein 6); transcription factor -1.11
23 245628_at AT1G56650 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1); DNA binding / transcription factor 1.81
24 264931_at AT1G60590 polygalacturonase, putative / pectinase, putative 1.62
25 261958_at AT1G64500 glutaredoxin family protein 1.16
26 261907_at AT1G65060 4CL3 (4-coumarate:CoA ligase 3); 4-coumarate-CoA ligase 1.46
27 260336_at AT1G73990 SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase 1.10
28 262682_at AT1G75900 family II extracellular lipase 3 (EXL3) -0.77
29 261727_at AT1G76090 SMT3 (S-adenosyl-methionine-sterol-C-methyltransferase 3); S-adenosylmethionine-dependent methyltransferase -0.78
30 260773_at AT1G78440 ATGA2OX1 (GIBBERELLIN 2-OXIDASE 1); gibberellin 2-beta-dioxygenase 1.76
31 263122_at AT1G78510 SPS1 (SOLANESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ trans-octaprenyltranstransferase 1.16
32 260297_at AT1G80280 hydrolase, alpha/beta fold family protein -1.16
33 265892_at AT2G15020 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64190.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67723.1) 3.18
34 263876_at AT2G21880 AtRABG2/AtRab7A (Arabidopsis Rab GTPase homolog G2); GTP binding -0.88
35 263875_at AT2G21970 SEP2 (STRESS ENHANCED PROTEIN 2) 1.27
36 266578_at AT2G23910 cinnamoyl-CoA reductase-related 4.20
37 267614_at AT2G26710 BAS1/CYP734A1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1); oxygen binding / steroid hydroxylase -0.83
38 267209_at AT2G30930 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06540.1) -0.81
39 255822_at AT2G40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) -1.38
40 259332_at AT3G03830 auxin-responsive protein, putative -1.75
41 259351_at AT3G05150 sugar transporter family protein -1.35
42 258528_at AT3G06770 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein -1.02
43 258552_at AT3G07010 pectate lyase family protein -1.13
44 258399_at AT3G15540 IAA19 (indoleacetic acid-induced protein 19); transcription factor -1.62
45 258349_at AT3G17609 HYH (HY5-HOMOLOG); DNA binding / transcription factor 1.25
46 258145_at AT3G18200 nodulin MtN21 family protein -1.68
47 257113_at AT3G20130 CYP705A22 (cytochrome P450, family 705, subfamily A, polypeptide 22); oxygen binding -0.99
48 258167_at AT3G21560 UGT84A2; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase 1.74
49 258321_at AT3G22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding 2.20
50 257253_at AT3G24190 ABC1 family protein 1.10
51 256621_at AT3G24450 copper-binding family protein -1.50
52 257618_at AT3G24715 ATP binding / protein kinase/ protein-tyrosine kinase -0.91
53 252765_at AT3G42800 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54200.1); similar to expressed protein [Olimarabidopsis pumila] (GB:ABA18092.1) -1.38
54 252661_at AT3G44450 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70571.1) 2.17
55 252563_at AT3G45970 ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) -1.03
56 252255_at AT3G49220 pectinesterase family protein -0.78
57 252123_at AT3G51240 F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase 2.53
58 252010_at AT3G52740 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70571.1) 2.00
59 251827_at AT3G55120 A11/CFI/TT5 (TRANSPARENT TESTA 5); chalcone isomerase 1.56
60 251658_at AT3G57020 strictosidine synthase family protein 1.10
61 251575_at AT3G58120 bZIP transcription factor family protein -1.30
62 251309_at AT3G61220 short-chain dehydrogenase/reductase (SDR) family protein 1.23
63 255608_at AT4G01140 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08600.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45372.1); contains InterPro domain Protein of unknown function DUF1191 (InterPro:IPR010605) -0.90
64 255549_at AT4G01950 ATGPAT3/GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3); acyltransferase -0.83
65 254954_at AT4G10910 unknown protein -0.99
66 254685_at AT4G13790 auxin-responsive protein, putative -1.84
67 245306_at AT4G14690 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2); chlorophyll binding 2.09
68 245336_at AT4G16515 unknown protein -1.48
69 245346_at AT4G17090 CT-BMY (BETA-AMYLASE 3, BETA-AMYLASE 8); beta-amylase 1.45
70 245362_at AT4G17460 HAT1 (homeobox-leucine zipper protein 1); DNA binding / transcription factor -1.18
71 254373_at AT4G21730 pseudogene of N-ethylmaleimide sensitive factor (NSF) -1.23
72 254387_at AT4G21850 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein -1.13
73 254065_at AT4G25420 GA5 (GA REQUIRING 5); gibberellin 20-oxidase/ gibberellin 3-beta-dioxygenase -1.52
74 254020_at AT4G25700 BETA-OHASE 1 (BETA-HYDROXYLASE 1); beta-carotene hydroxylase 1.17
75 253957_at AT4G26320 AGP13 (ARABINOGALACTAN PROTEIN 13) -1.14
76 253943_at AT4G27030 small conjugating protein ligase 1.22
77 253875_at AT4G27520 plastocyanin-like domain-containing protein 1.13
78 253608_at AT4G30290 ATXTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19); hydrolase, acting on glycosyl bonds -0.81
79 253496_at AT4G31870 ATGPX7 (GLUTATHIONE PEROXIDASE 7); glutathione peroxidase 1.27
80 253255_at AT4G34760 auxin-responsive family protein -1.24
81 253103_at AT4G36110 auxin-responsive protein, putative -1.26
82 252997_at AT4G38400 ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) -1.00
83 252970_at AT4G38850 SAUR_AC1 (SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA) -1.43
84 251144_at AT5G01210 transferase family protein -0.96
85 251020_at AT5G02270 ATNAP9 (Non-intrinsic ABC protein 9) 1.82
86 250982_at AT5G03150 JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding -0.77
87 250882_at AT5G04000 similar to hypothetical protein [Vitis vinifera] (GB:CAN76250.1) 1.14
88 250794_at AT5G05270 chalcone-flavanone isomerase family protein 1.32
89 250533_at AT5G08640 FLS (FLAVONOL SYNTHASE) 2.11
90 250420_at AT5G11260 HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor 1.12
91 250207_at AT5G13930 ATCHS/CHS/TT4 (CHALCONE SYNTHASE); naringenin-chalcone synthase 1.79
92 250108_at AT5G15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / transcription factor -0.85
93 246562_at AT5G15580 LNG1 (LONGIFOLIA1) -1.15
94 246468_at AT5G17050 UDP-glucoronosyl/UDP-glucosyl transferase family protein 1.80
95 250083_at AT5G17220 ATGSTF12 (GLUTATHIONE S-TRANSFERASE 26); glutathione transferase 2.02
96 249769_at AT5G24120 SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor 1.20
97 246966_at AT5G24850 CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding 1.93
98 249677_at AT5G35970 DNA-binding protein, putative 1.10
99 249622_at AT5G37550 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G66190.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75247.1) 1.15
100 249340_at AT5G41140 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62788.1); contains domain PTHR23160 (PTHR23160) -1.20
101 249244_at AT5G42270 VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase 1.09
102 249191_at AT5G42760 similar to unknown [Populus trichocarpa] (GB:ABK95091.1); contains InterPro domain O-methyltransferase, N-terminal (InterPro:IPR003455); contains InterPro domain Conserved hypothetical protein CHP00027, methylltransferase (InterPro:IPR011610) 1.94
103 249063_at AT5G44110 POP1 1.86
104 249008_at AT5G44680 methyladenine glycosylase family protein -1.50
105 248912_at AT5G45670 GDSL-motif lipase/hydrolase family protein -0.96
106 248888_at AT5G46240 KAT1 (K+ ATPASE 1); cyclic nucleotide binding / inward rectifier potassium channel -1.00
107 248801_at AT5G47370 HAT2; transcription factor -0.95
108 248625_at AT5G48880 KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2); acetyl-CoA C-acyltransferase 2.09
109 248347_at AT5G52250 transducin family protein / WD-40 repeat family protein 1.57
110 247946_at AT5G57180 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) 1.19
111 247779_at AT5G58760 DDB2 (DAMAGED DNA-BINDING 2); nucleotide binding 1.12
112 247780_at AT5G58770 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative 1.30
113 247533_at AT5G61570 protein kinase family protein -0.79
114 247540_at AT5G61590 AP2 domain-containing transcription factor family protein -0.79