marker gene list
| Dark 4 h pls RedLight 1min |
| Pedicels stage15 |
･･･up requlated genes
･･･down regulated genes| probeID | AGICode | Annotation | gene expression |
|
|---|---|---|---|---|
| 1 | 263114_at | AT1G03130 | PSAD-2 (photosystem I subunit D-2) | 1.49 |
| 2 | 264839_at | AT1G03630 | POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase | 1.65 |
| 3 | 262632_at | AT1G06680 | PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2); poly(U) binding | 1.23 |
| 4 | 261746_at | AT1G08380 | PSAO (photosystem I subunit O) | 2.54 |
| 5 | 263676_at | AT1G09340 | CRB; binding / catalytic/ coenzyme binding | 1.66 |
| 6 | 264524_at | AT1G10070 | ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic | -0.81 |
| 7 | 262453_at | AT1G11240 | similar to hypothetical protein OsI_011255 [Oryza sativa (indica cultivar-group)] (GB:EAY90022.1); similar to Os03g0353500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050128.1); contains domain PTHR14577 (PTHR14577) | -0.63 |
| 8 | 261197_at | AT1G12900 | GAPA-2; glyceraldehyde-3-phosphate dehydrogenase | 1.40 |
| 9 | 260741_at | AT1G15040 | glutamine amidotransferase-related | -0.78 |
| 10 | 262580_at | AT1G15330 | CBS domain-containing protein | -0.69 |
| 11 | 259491_at | AT1G15820 | LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding | 2.53 |
| 12 | 256114_at | AT1G16850 | unknown protein | -1.07 |
| 13 | 262483_at | AT1G17220 | FUG1 (FU-GAERI1); translation initiation factor | 1.20 |
| 14 | 255905_at | AT1G17810 | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN); water channel | -1.00 |
| 15 | 256015_at | AT1G19150 | LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding | 1.72 |
| 16 | 260664_at | AT1G19510 | myb family transcription factor | -0.70 |
| 17 | 255886_at | AT1G20340 | DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier | 1.91 |
| 18 | 260877_at | AT1G21500 | similar to hypothetical protein OsI_030994 [Oryza sativa (indica cultivar-group)] (GB:EAZ09762.1); similar to Os09g0517000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063677.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33829.1) | 1.57 |
| 19 | 263032_at | AT1G23850 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74577.1) | -0.60 |
| 20 | 261272_at | AT1G26665 | similar to RNA polymerase II mediator complex protein-related [Arabidopsis thaliana] (TAIR:AT5G41910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62915.1); contains domain PTHR13345:SF2 (PTHR13345:SF2); contains domain PD331788 (PD331788); contains domain PTHR13345 (PTHR13345) | -0.72 |
| 21 | 256309_at | AT1G30380 | PSAK (PHOTOSYSTEM I SUBUNIT K) | 2.40 |
| 22 | 262557_at | AT1G31330 | PSAF (photosystem I subunit F) | 1.67 |
| 23 | 262407_at | AT1G34630 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51150.1); similar to Os03g0190900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049229.1); similar to hypothetical protein OsI_010090 [Oryza sativa (indica cultivar-group)] (GB:EAY88857.1); contains domain PTHR12459 (PTHR12459) | -0.58 |
| 24 | 259625_at | AT1G42970 | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase | 1.26 |
| 25 | 259460_at | AT1G44000 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11911.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81476.1) | 1.37 |
| 26 | 260506_at | AT1G47210 | CYCA3;2; cyclin-dependent protein kinase | -0.60 |
| 27 | 260502_at | AT1G47270 | AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor | -0.77 |
| 28 | 261603_at | AT1G49600 | ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA binding | -0.75 |
| 29 | 259840_at | AT1G52230 | PSAH-2/PSAH2/PSI-H (PHOTOSYSTEM I SUBUNIT H-2) | 2.60 |
| 30 | 262198_at | AT1G53830 | ATPME2 (Arabidopsis thaliana pectin methylesterase 2) | -0.90 |
| 31 | 264545_at | AT1G55670 | PSAG | 1.64 |
| 32 | 263738_at | AT1G60060 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40921.1); contains domain PTHR13902:SF3 (PTHR13902:SF3); contains domain PTHR13902 (PTHR13902) | -0.62 |
| 33 | 265033_at | AT1G61520 | LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding | 1.42 |
| 34 | 262645_at | AT1G62750 | ATSCO1/ATSCO1/CPEF-G/SCO1 (SNOWY COTYLEDON1); translation elongation factor/ translation factor, nucleic acid binding | 1.36 |
| 35 | 261957_at | AT1G64660 | ATMGL; catalytic/ methionine gamma-lyase | -0.64 |
| 36 | 256359_at | AT1G66460 | protein kinase family protein | -1.21 |
| 37 | 260460_at | AT1G68230 | reticulon family protein (RTNLB14) | -0.60 |
| 38 | 260361_at | AT1G69360 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65039.1); contains InterPro domain Protein of unknown function DUF863, plant (InterPro:IPR008581) | -0.69 |
| 39 | 260181_at | AT1G70710 | AtGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1); hydrolase, hydrolyzing O-glycosyl compounds | -0.96 |
| 40 | 259892_at | AT1G72610 | GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir | 1.88 |
| 41 | 262373_at | AT1G73120 | similar to hypothetical protein [Vitis vinifera] (GB:CAN69175.1) | -0.60 |
| 42 | 262168_at | AT1G74730 | similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96654.1); contains InterPro domain Protein of unknown function DUF1118 (InterPro:IPR009500) | 1.73 |
| 43 | 262970_at | AT1G75690 | chaperone protein dnaJ-related | 1.76 |
| 44 | 261751_at | AT1G76080 | ATCDSP32/CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD); thiol-disulfide exchange intermediate | 1.42 |
| 45 | 261769_at | AT1G76100 | plastocyanin | 1.38 |
| 46 | 246390_at | AT1G77330 | 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative | -1.21 |
| 47 | 262047_at | AT1G80160 | lactoylglutathione lyase family protein / glyoxalase I family protein | -0.62 |
| 48 | 265374_at | AT2G06520 | PSBX (photosystem II subunit X) | 1.52 |
| 49 | 265287_at | AT2G20260 | PSAE-2 (photosystem I subunit E-2); catalytic | 1.22 |
| 50 | 264045_at | AT2G22450 | riboflavin biosynthesis protein, putative | -0.87 |
| 51 | 265989_at | AT2G24260 | basic helix-loop-helix (bHLH) family protein | -0.58 |
| 52 | 267517_at | AT2G30520 | RPT2 (ROOT PHOTOTROPISM 2); protein binding | 1.42 |
| 53 | 267526_at | AT2G30570 | PSBW (PHOTOSYSTEM II REACTION CENTER W) | 1.46 |
| 54 | 256712_at | AT2G34020 | calcium ion binding | -0.90 |
| 55 | 263841_at | AT2G36870 | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative | 1.48 |
| 56 | 263844_at | AT2G36930 | zinc finger (C2H2 type) family protein | -0.66 |
| 57 | 267080_at | AT2G41190 | amino acid transporter family protein | -0.58 |
| 58 | 267635_at | AT2G42220 | rhodanese-like domain-containing protein | 1.74 |
| 59 | 265245_at | AT2G43060 | transcription factor | -0.94 |
| 60 | 260542_at | AT2G43560 | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein | 1.57 |
| 61 | 266581_at | AT2G46140 | late embryogenesis abundant protein, putative / LEA protein, putative | -0.70 |
| 62 | 263779_at | AT2G46340 | SPA1 (SUPPRESSOR OF PHYA-105 1); signal transducer | 1.24 |
| 63 | 260527_at | AT2G47270 | transcription factor/ transcription regulator | -0.75 |
| 64 | 245123_at | AT2G47450 | CAO (CHAOS); chromatin binding | 1.20 |
| 65 | 258607_at | AT3G02730 | ATF1/TRXF1 (THIOREDOXIN F-TYPE 1); thiol-disulfide exchange intermediate | 1.40 |
| 66 | 258589_at | AT3G04290 | ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase | 1.58 |
| 67 | 259143_at | AT3G10190 | calmodulin, putative | -0.58 |
| 68 | 256433_at | AT3G10985 | SAG20 (WOUND-INDUCED PROTEIN 12) | -0.60 |
| 69 | 258777_at | AT3G11850 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39886.1); contains InterPro domain Protein of unknown function DUF593 (InterPro:IPR007656) | -0.62 |
| 70 | 256266_at | AT3G12320 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75675.1) | -1.33 |
| 71 | 257689_at | AT3G12820 | AtMYB10 (myb domain protein 10); DNA binding / transcription factor | -0.75 |
| 72 | 256965_at | AT3G13450 | DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) | -0.62 |
| 73 | 258395_at | AT3G15500 | ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor | -0.58 |
| 74 | 258285_at | AT3G16140 | PSAH-1 (photosystem I subunit H-1) | 1.40 |
| 75 | 258055_at | AT3G16250 | ferredoxin-related | 1.80 |
| 76 | 257932_at | AT3G17040 | HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding | 2.01 |
| 77 | 257990_at | AT3G19860 | basic helix-loop-helix (bHLH) family protein | -0.66 |
| 78 | 256979_at | AT3G21055 | PSBTN (photosystem II subunit T) | 2.56 |
| 79 | 256970_at | AT3G21090 | ABC transporter family protein | -1.01 |
| 80 | 257947_at | AT3G21720 | isocitrate lyase, putative | -0.82 |
| 81 | 257171_at | AT3G23760 | similar to transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G14100.1); similar to unknown [Populus trichocarpa] (GB:ABK94230.1) | -0.63 |
| 82 | 257197_at | AT3G23800 | selenium-binding family protein | -0.65 |
| 83 | 257643_at | AT3G25730 | AP2 domain-containing transcription factor, putative | -0.73 |
| 84 | 257311_at | AT3G26570 | PHT2;1 (phosphate transporter 2;1) | 1.40 |
| 85 | 258239_at | AT3G27690 | LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding | 1.83 |
| 86 | 256589_at | AT3G28740 | cytochrome P450 family protein | -0.75 |
| 87 | 252441_at | AT3G46780 | PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE18); binding / catalytic | 1.74 |
| 88 | 252463_at | AT3G47070 | similar to unknown [Populus trichocarpa] (GB:ABK95428.1) | 1.21 |
| 89 | 252415_at | AT3G47340 | ASN1 (DARK INDUCIBLE 6) | -0.87 |
| 90 | 252430_at | AT3G47470 | LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding | 1.87 |
| 91 | 252130_at | AT3G50820 | PSBO-2/PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding | 1.94 |
| 92 | 251977_at | AT3G53250 | auxin-responsive family protein | 1.80 |
| 93 | 251814_at | AT3G54890 | LHCA1; chlorophyll binding | 3.54 |
| 94 | 251519_at | AT3G59400 | GUN4 (Genomes uncoupled 4) | 2.16 |
| 95 | 251373_at | AT3G60530 | zinc finger (GATA type) family protein | -0.98 |
| 96 | 255572_at | AT4G01050 | hydroxyproline-rich glycoprotein family protein | 1.20 |
| 97 | 255457_at | AT4G02770 | PSAD-1 (photosystem I subunit D-1) | 2.07 |
| 98 | 255248_at | AT4G05180 | PSBQ/PSBQ-2/PSII-Q (PHOTOSYSTEM II SUBUNIT Q-2); calcium ion binding | 2.27 |
| 99 | 255046_at | AT4G09650 | ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative | 1.57 |
| 100 | 254970_at | AT4G10340 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding | 1.59 |
| 101 | 254790_at | AT4G12800 | PSAL (photosystem I subunit L) | 1.81 |
| 102 | 245325_at | AT4G14130 | XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7); hydrolase, acting on glycosyl bonds | -0.82 |
| 103 | 245501_at | AT4G15620 | integral membrane family protein | 1.35 |
| 104 | 245388_at | AT4G16410 | similar to hypothetical protein [Vitis vinifera] (GB:CAN73304.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39941.1); contains InterPro domain Protein of unknown function DUF751 (InterPro:IPR008470) | 1.19 |
| 105 | 254623_at | AT4G18480 | CHLI1 (CHLORINA 42); magnesium chelatase | 1.34 |
| 106 | 254398_at | AT4G21280 | PSBQ/PSBQ-1/PSBQA; calcium ion binding | 1.68 |
| 107 | 254327_at | AT4G22490 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | -0.66 |
| 108 | 254102_at | AT4G25050 | ACP4 (ACYL CARRIER PROTEIN 4) | 1.34 |
| 109 | 253790_at | AT4G28660 | PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) | 1.60 |
| 110 | 253738_at | AT4G28750 | PSAE-1 (PSA E1 KNOCKOUT); catalytic | 2.33 |
| 111 | 253522_at | AT4G31290 | ChaC-like family protein | -1.10 |
| 112 | 253434_at | AT4G32500 | AKT5 (Arabidopsis K+ transporter 5); cyclic nucleotide binding / inward rectifier potassium channel | -0.69 |
| 113 | 253387_at | AT4G33010 | ATGLDP1 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 1); glycine dehydrogenase (decarboxylating) | 1.33 |
| 114 | 253041_at | AT4G37870 | PCK1/PEPCK (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1); ATP binding / phosphoenolpyruvate carboxykinase (ATP) | -0.59 |
| 115 | 253009_at | AT4G37930 | SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding | 1.61 |
| 116 | 252929_at | AT4G38970 | fructose-bisphosphate aldolase, putative | 1.28 |
| 117 | 252911_at | AT4G39510 | CYP96A12 (cytochrome P450, family 96, subfamily A, polypeptide 12); oxygen binding | 1.29 |
| 118 | 252906_at | AT4G39640 | GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase | -0.63 |
| 119 | 252855_at | AT4G39660 | AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase | -0.84 |
| 120 | 252872_at | AT4G40010 | SNRK2-7/SNRK2.7/SRK2F (SNF1-RELATED PROTEIN KINASE 2.7); kinase | -0.93 |
| 121 | 251082_at | AT5G01530 | chlorophyll A-B binding protein CP29 (LHCB4) | 1.19 |
| 122 | 251039_at | AT5G02020 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55646.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15731.1) | -0.98 |
| 123 | 250992_at | AT5G02260 | ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) | -0.98 |
| 124 | 251013_at | AT5G02540 | short-chain dehydrogenase/reductase (SDR) family protein | -1.18 |
| 125 | 251010_at | AT5G02550 | unknown protein | -0.68 |
| 126 | 251012_at | AT5G02580 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55240.1); similar to hypothetical protein OsI_019565 [Oryza sativa (indica cultivar-group)] (GB:EAY98332.1); similar to Os05g0462000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055765.1); contains InterPro domain Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476) | -1.26 |
| 127 | 250661_at | AT5G07030 | pepsin A | -0.80 |
| 128 | 250441_at | AT5G10540 | peptidase M3 family protein / thimet oligopeptidase family protein | -0.59 |
| 129 | 250243_at | AT5G13630 | GUN5 (GENOMES UNCOUPLED 5) | 1.56 |
| 130 | 246596_at | AT5G14740 | CA2 (BETA CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding | -0.80 |
| 131 | 246594_at | AT5G14800 | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase | -0.74 |
| 132 | 250006_at | AT5G18660 | DVR (PALE-GREEN AND CHLOROPHYLL B REDUCED 2); 3,8-divinyl protochlorophyllide a 8-vinyl reductase | 1.92 |
| 133 | 246071_at | AT5G20150 | SPX (SYG1/Pho81/XPR1) domain-containing protein | -0.64 |
| 134 | 246159_at | AT5G20935 | similar to unnamed protein product [Vitis vinifera] (GB:CAO67410.1) | 2.28 |
| 135 | 246184_at | AT5G20950 | glycosyl hydrolase family 3 protein | -0.67 |
| 136 | 249869_at | AT5G23050 | acyl-activating enzyme 17 (AAE17) | -0.86 |
| 137 | 249876_at | AT5G23060 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59780.1); similar to extracellular Ca2+ sensing receptor [Glycine max] (GB:ABY57763.1); contains InterPro domain Rhodanese-like (InterPro:IPR001763) | 1.60 |
| 138 | 249824_at | AT5G23380 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45300.1); contains InterPro domain Protein of unknown function DUF789 (InterPro:IPR008507) | -0.84 |
| 139 | 249645_at | AT5G36910 | THI2.2 (THIONIN 2.2); toxin receptor binding | 5.12 |
| 140 | 249606_at | AT5G37260 | CIR1/RVE2 (CIRCADIAN 1); DNA binding / transcription factor | -0.83 |
| 141 | 248886_at | AT5G46110 | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT); antiporter/ triose-phosphate transmembrane transporter | 1.28 |
| 142 | 248828_at | AT5G47110 | lil3 protein, putative | -0.93 |
| 143 | 248793_at | AT5G47240 | ATNUDT8 (Arabidopsis thaliana Nudix hydrolase homolog 8); hydrolase | -0.62 |
| 144 | 248684_at | AT5G48485 | DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipid binding | 2.60 |
| 145 | 248683_at | AT5G48490 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 3.62 |
| 146 | 248435_at | AT5G51210 | OLEO3 (OLEOSIN3) | -1.22 |
| 147 | 248151_at | AT5G54270 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3) | 2.57 |
| 148 | 248160_at | AT5G54470 | zinc finger (B-box type) family protein | -1.18 |
| 149 | 247878_at | AT5G57760 | unknown protein | -0.79 |
| 150 | 247352_at | AT5G63650 | SNRK2-5/SNRK2.5/SRK2H (SNF1-RELATED PROTEIN KINASE 2.5); kinase | -0.76 |
| 151 | 247356_at | AT5G63800 | BGAL6/MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase | -0.61 |
| 152 | 247320_at | AT5G64040 | PSAN (photosystem I reaction center subunit PSI-N); calmodulin binding | 1.52 |
| 153 | 247073_at | AT5G66570 | OE33/OEE1/OEE33/PSBO-1/PSBO1 (OXYGEN-EVOLVING ENHANCER 33); oxygen evolving/ poly(U) binding | 1.39 |
| 154 | 247074_at | AT5G66590 | allergen V5/Tpx-1-related family protein | -0.59 |