marker gene list
Red Light 4 h
Mutant phyAphyB (Red Light 1h)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 262525_at AT1G17060 CYP72C1 (cytochrome P450, family 72, subfamily C, polypeptide 1); oxygen binding 0.56
2 261927_at AT1G22500 zinc finger (C3HC4-type RING finger) family protein 0.73
3 260516_at AT1G51450 SPla/RYanodine receptor (SPRY) domain-containing protein 0.43
4 262643_at AT1G62770 invertase/pectin methylesterase inhibitor family protein 0.50
5 260072_at AT1G73650 oxidoreductase, acting on the CH-CH group of donors -0.88
6 263128_at AT1G78600 zinc finger (B-box type) family protein -0.91
7 262045_at AT1G80240 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44183.1); contains InterPro domain Protein of unknown function DUF642 (InterPro:IPR006946) 1.19
8 265443_at AT2G20750 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) 0.43
9 266656_at AT2G25900 ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor 0.52
10 266097_at AT2G37970 SOUL-1; binding -0.95
11 263787_at AT2G46420 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39750.1); contains InterPro domain Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476) -1.12
12 258609_at AT3G02910 Identical to UPF0131 protein At3g02910 [Arabidopsis Thaliana] (GB:Q9M8T3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46720.1); similar to Os03g0854000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051934.1); similar to unknown [Picea sitchensis] (GB:ABK22133.1); contains InterPro domain Butirosin biosynthesis, BtrG-like (InterPro:IPR013024); contains InterPro domain Protein of unknown function UPF0131 (InterPro:IPR005347) -1.20
13 257701_at AT3G12710 methyladenine glycosylase family protein 0.60
14 256887_at AT3G15150 similar to unnamed protein product [Vitis vinifera] (GB:CAO39331.1); contains domain PTHR21330 (PTHR21330); contains domain SSF57850 (SSF57850); contains domain PTHR21330:SF1 (PTHR21330:SF1) 0.60
15 258349_at AT3G17609 HYH (HY5-HOMOLOG); DNA binding / transcription factor -1.19
16 257033_at AT3G19170 ATPREP1/ATZNMP (PRESEQUENCE PROTEASE 1); metalloendopeptidase -1.02
17 258167_at AT3G21560 UGT84A2; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase -1.04
18 258321_at AT3G22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding -1.43
19 257868_at AT3G25070 RIN4 (RPM1 INTERACTING PROTEIN 4); protein binding 0.41
20 252607_at AT3G44990 XTR8 (xyloglucan:xyloglucosyl transferase 8); hydrolase, acting on glycosyl bonds -1.05
21 252415_at AT3G47340 ASN1 (DARK INDUCIBLE 6) 0.84
22 252250_at AT3G49790 ATP binding 0.49
23 252123_at AT3G51240 F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase -1.10
24 251727_at AT3G56290 similar to hypothetical protein [Vitis vinifera] (GB:CAN75527.1) -1.44
25 251658_at AT3G57020 strictosidine synthase family protein -1.98
26 251670_at AT3G57190 peptide chain release factor, putative -0.93
27 251148_at AT3G63180 ATTKL/TKL (TICKLE) 0.48
28 255549_at AT4G01950 ATGPAT3/GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3); acyltransferase 0.54
29 255298_at AT4G04840 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein -1.43
30 253943_at AT4G27030 small conjugating protein ligase -1.13
31 253908_at AT4G27260 GH3.5/WES1; indole-3-acetic acid amido synthetase 0.69
32 253667_at AT4G30170 peroxidase, putative 1.12
33 253406_at AT4G32890 zinc finger (GATA type) family protein 0.57
34 253039_at AT4G37760 SQE3 (SQUALENE EPOXIDASE 3); oxidoreductase -1.02
35 252991_at AT4G38470 protein kinase family protein 0.44
36 251020_at AT5G02270 ATNAP9 (Non-intrinsic ABC protein 9) -1.66
37 250810_at AT5G05090 myb family transcription factor 0.68
38 250207_at AT5G13930 ATCHS/CHS/TT4 (CHALCONE SYNTHASE); naringenin-chalcone synthase -1.64
39 246506_at AT5G16110 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G02555.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96917.1) 0.53
40 246151_at AT5G19950 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63540.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63540.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67825.1); contains InterPro domain Region of unknown function DUF1767 (InterPro:IPR013894) 0.57
41 249915_at AT5G22870 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related 0.46
42 249798_at AT5G23730 nucleotide binding -1.30
43 249769_at AT5G24120 SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor -1.21
44 246966_at AT5G24850 CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding -0.96
45 246911_at AT5G25810 TNY (TINY); DNA binding / transcription factor -0.99
46 249415_at AT5G39660 CDF2 (CYCLING DOF FACTOR 2); DNA binding / protein binding / transcription factor 0.43
47 249063_at AT5G44110 POP1 -1.75
48 248683_at AT5G48490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 0.56
49 248049_at AT5G56090 COX15 (CYTOCHROME C OXIDASE 15) -0.91
50 247830_at AT5G58530 glutaredoxin family protein 0.45
51 247780_at AT5G58770 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative -1.86
52 247586_at AT5G60660 PIP2;4/PIP2F (plasma membrane intrinsic protein 2;4); water channel 0.48