marker gene list
Mutant phyA (Dark)
Mutant phyAphyB (Dark)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 264169_at AT1G02020 nitroreductase family protein 0.72
2 260914_at AT1G02640 BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds 0.79
3 262107_at AT1G02750 zinc ion binding -1.11
4 262118_at AT1G02850 glycosyl hydrolase family 1 protein -1.16
5 264835_at AT1G03550 secretory carrier membrane protein (SCAMP) family protein -1.23
6 264816_at AT1G03560 pentatricopeptide (PPR) repeat-containing protein 0.78
7 265044_at AT1G03950 VPS2.3 1.58
8 265193_at AT1G05070 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32580.1); similar to unknown [Populus trichocarpa] (GB:ABK95314.1); contains InterPro domain Protein of unknown function DUF1068 (InterPro:IPR010471) -0.98
9 264580_at AT1G05340 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32210.1) -1.52
10 263179_at AT1G05710 ethylene-responsive protein, putative 1.09
11 263181_at AT1G05720 selenoprotein family protein -0.87
12 260957_at AT1G06080 ADS1 (DELTA 9 DESATURASE 1); oxidoreductase 1.01
13 260785_at AT1G06200 serine-type peptidase/ signal peptidase -1.22
14 261785_at AT1G08230 amino acid transporter family protein 1.32
15 264797_at AT1G08710 F-box family protein 0.60
16 264508_at AT1G09570 PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ signal transducer -0.99
17 264665_at AT1G09660 KH domain-containing quaking protein, putative 0.69
18 264662_at AT1G09960 SUT4 (SUCROSE TRANSPORTER 4); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen ion symporter -0.80
19 264522_at AT1G10050 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein 2.06
20 263206_at AT1G10590 DNA-binding protein-related -1.06
21 261832_at AT1G10650 protein binding / zinc ion binding -1.00
22 260465_at AT1G10910 similar to PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) [Arabidopsis thaliana] (TAIR:AT1G74850.1); similar to hypothetical protein OsI_002384 [Oryza sativa (indica cultivar-group)] (GB:EAY74537.1); similar to putative PPR protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87953.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24702.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) -1.32
23 259529_at AT1G12400 DNA binding 1.60
24 255939_at AT1G12730 cell division cycle protein-related 1.82
25 261205_at AT1G12790 similar to unnamed protein product [Vitis vinifera] (GB:CAO44590.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994) 1.53
26 261201_at AT1G12850 phosphoglycerate/bisphosphoglycerate mutase family protein 0.94
27 259366_at AT1G13280 AOC4 (ALLENE OXIDE CYCLASE 4) 0.83
28 255773_at AT1G18590 sulfotransferase family protein 1.20
29 259516_at AT1G20450 ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) -1.01
30 260867_at AT1G43790 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G48920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71192.1) -1.05
31 260007_at AT1G67870 glycine-rich protein -0.94
32 259373_at AT1G69160 unknown protein -0.88
33 260392_at AT1G74030 enolase, putative 0.60
34 261726_at AT1G76270 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20550.1); similar to axi 1 [Nicotiana tabacum] (GB:CAA56570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62021.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47467.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) -0.81
35 262921_at AT1G79430 APL (ALTERED PHLOEM DEVELOPMENT); transcription factor -0.85
36 265741_at AT2G01320 ABC transporter family protein -0.91
37 266329_at AT2G01590 similar to unnamed protein product [Vitis vinifera] (GB:CAO42320.1) -0.80
38 266352_at AT2G01610 invertase/pectin methylesterase inhibitor family protein -0.88
39 267239_at AT2G02510 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14450.1); similar to unknown [Populus trichocarpa] (GB:ABK94107.1) -0.84
40 263630_at AT2G04845 GCN5-related N-acetyltransferase (GNAT) family protein -0.88
41 265746_at AT2G06630 transposable element gene 5.39
42 267323_at AT2G19340 membrane protein, putative -0.91
43 267616_at AT2G26680 similar to unnamed protein product [Vitis vinifera] (GB:CAO65660.1); contains InterPro domain Methyltransferase FkbM (InterPro:IPR006342) 0.73
44 267153_at AT2G30860 ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase 0.70
45 267013_at AT2G39180 protein kinase family protein 0.62
46 267359_at AT2G40020 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45248.2) 0.69
47 255877_at AT2G40460 proton-dependent oligopeptide transport (POT) family protein 0.90
48 266368_at AT2G41380 embryo-abundant protein-related 0.60
49 265460_at AT2G46600 calcium-binding protein, putative -0.90
50 259130_at AT3G02190 60S ribosomal protein L39 (RPL39B) -0.97
51 258897_at AT3G05730 Encodes a defensin-like (DEFL) family protein. -1.13
52 259216_at AT3G09000 proline-rich family protein 0.64
53 257130_at AT3G20210 DELTA-VPE (delta vacuolar processing enzyme); cysteine-type endopeptidase 0.61
54 257670_at AT3G20340 Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. -0.93
55 257762_at AT3G23100 XRCC4 (Arabidopsis thaliana homolog of human DNA ligase IV-binding protein XRCC4) 0.64
56 258133_at AT3G24500 ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor -0.90
57 258134_at AT3G24530 AAA-type ATPase family protein / ankyrin repeat family protein 0.64
58 252837_at AT3G42080 transposable element gene -3.31
59 252506_at AT3G46180 ATUTR5/UTR5 (UDP-GALACTOSE TRANSPORTER 5); galactose transmembrane transporter -0.95
60 251705_at AT3G56400 WRKY70 (WRKY DNA-binding protein 70); transcription factor 0.82
61 251328_at AT3G61600 ATPOB1 (Arabidopsis thaliana POZ/BTB containing-protein 1); protein binding -0.87
62 251272_at AT3G61890 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 12); transcription factor -0.94
63 255527_at AT4G02360 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02813.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40037.1); contains InterPro domain Protein of unknown function DUF538 (InterPro:IPR007493) 0.61
64 255255_at AT4G05070 unknown protein -0.89
65 254828_at AT4G12550 AIR1 (Auxin-Induced in Root cultures 1); lipid binding -1.28
66 254294_at AT4G23070 rhomboid family protein 0.60
67 253804_at AT4G28230 similar to unnamed protein product [Vitis vinifera] (GB:CAO41238.1) 0.77
68 253687_at AT4G29520 similar to unnamed protein product [Vitis vinifera] (GB:CAO65389.1); contains InterPro domain Saposin B (InterPro:IPR008139) 0.79
69 253534_at AT4G31500 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding 1.11
70 253447_at AT4G32630 ARF GTPase activator/ zinc ion binding -0.96
71 253305_at AT4G33666 unknown protein -1.07
72 250446_at AT5G10770 chloroplast nucleoid DNA-binding protein, putative 0.77
73 246523_at AT5G15850 COL1 (CONSTANS-LIKE 1); transcription factor/ zinc ion binding -0.92
74 249996_at AT5G18600 glutaredoxin family protein -1.08
75 246043_at AT5G19380 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12170.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO16866.1); contains domain Multidrug resistance efflux transporter EmrE (SSF103481) 0.92
76 246847_at AT5G26820 ferroportin-related 0.63
77 249169_at AT5G42880 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45545.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61337.1); contains InterPro domain Protein of unknown function DUF827, plant (InterPro:IPR008545) 0.97
78 249127_at AT5G43500 ATARP9 (ACTIN-RELATED PROTEIN 9); protein binding 1.29
79 248996_at AT5G45260 RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); transcription factor 0.70
80 248921_at AT5G45950 GDSL-motif lipase/hydrolase family protein 0.68
81 247962_at AT5G56580 ATMKK6 (ARABIDOPSIS NQK1); kinase -0.81
82 247882_at AT5G57785 unknown protein -0.85
83 247754_at AT5G59080 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G02020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15731.1) -0.92
84 247717_at AT5G59320 LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding 0.60
85 247509_at AT5G62020 AT-HSFB2A (Arabidopsis thaliana heat shock transcription factor B2A); DNA binding / transcription factor -0.96
86 247440_at AT5G62680 proton-dependent oligopeptide transport (POT) family protein 0.67