marker gene list
Mutant phyB (Dark)
Mutant phyAphyB (Red Light 1h)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 263175_at AT1G05510 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31985.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45247.1); contains InterPro domain Protein of unknown function DUF1264 (InterPro:IPR010686) -1.41
2 261205_at AT1G12790 similar to unnamed protein product [Vitis vinifera] (GB:CAO44590.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994) 2.22
3 262857_at AT1G14930 major latex protein-related / MLP-related 1.49
4 260744_at AT1G15010 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42242.1) -1.33
5 260662_at AT1G19540 isoflavone reductase, putative 1.11
6 259568_at AT1G20490 AMP-dependent synthetase and ligase family protein 1.42
7 261447_at AT1G21160 translation initiation factor -1.55
8 264873_at AT1G24100 UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups 1.51
9 262299_at AT1G27520 glycoside hydrolase family 47 protein -1.60
10 256354_at AT1G54870 oxidoreductase -1.47
11 263138_at AT1G65090 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36100.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN81170.1) -1.32
12 260035_at AT1G68850 peroxidase, putative -1.38
13 262181_at AT1G78060 glycosyl hydrolase family 3 protein 1.08
14 264143_at AT1G79330 AMC6/ATMC5/ATMCP2B (TYPE-II METACASPASES); caspase/ cysteine-type endopeptidase -1.59
15 262045_at AT1G80240 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44183.1); contains InterPro domain Protein of unknown function DUF642 (InterPro:IPR006946) 1.84
16 266141_at AT2G02120 LCR70/PDF2.1 (Low-molecular-weight cysteine-rich 70); protease inhibitor -1.65
17 265699_at AT2G03550 hydrolase 1.12
18 263276_at AT2G14100 CYP705A13 (cytochrome P450, family 705, subfamily A, polypeptide 13); oxygen binding 3.12
19 265575_at AT2G14260 PIP (proline iminopeptidase); prolyl aminopeptidase -2.63
20 265891_at AT2G15010 thionin, putative -1.81
21 265894_at AT2G15050 LTP; lipid binding 2.17
22 263330_at AT2G15320 leucine-rich repeat family protein 1.08
23 263098_at AT2G16005 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 2.02
24 265405_at AT2G16750 protein kinase family protein 1.37
25 264905_at AT2G17430 ATMLO7/MLO7 (MILDEW RESISTANCE LOCUS O 7); calmodulin binding -1.98
26 265327_at AT2G18210 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36500.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45855.1) 1.76
27 265334_at AT2G18370 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein -1.32
28 265926_at AT2G18600 RUB1-conjugating enzyme, putative 1.26
29 266941_at AT2G18980 peroxidase, putative 2.26
30 267336_at AT2G19310 similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to 18.5 kDa class I heat shock protein (HSP 18.5) (GB:P05478); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978) 2.10
31 265286_at AT2G20360 binding / catalytic/ coenzyme binding 1.19
32 263881_at AT2G21820 similar to hypothetical protein MtrDRAFT_AC155884g16v2 [Medicago truncatula] (GB:ABN08202.1) -1.58
33 264052_at AT2G22330 CYP79B3 (cytochrome P450, family 79, subfamily B, polypeptide 3); oxygen binding -1.29
34 264054_at AT2G22540 SVP (SHORT VEGETATIVE PHASE); transcription factor 1.68
35 267127_at AT2G23610 esterase, putative 1.21
36 265990_at AT2G24280 serine carboxypeptidase S28 family protein 1.18
37 265615_at AT2G25450 2-oxoglutarate-dependent dioxygenase, putative -3.34
38 265907_at AT2G25650 DNA-binding storekeeper protein-related -1.68
39 266988_at AT2G39310 jacalin lectin family protein -1.56
40 259264_at AT3G01260 aldose 1-epimerase family protein 1.08
41 259167_at AT3G01570 glycine-rich protein / oleosin -1.41
42 258905_at AT3G06390 integral membrane family protein -1.61
43 258327_at AT3G22640 cupin family protein -1.37
44 251531_at AT3G58550 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein -1.37
45 254907_at AT4G11190 disease resistance-responsive family protein / dirigent family protein 1.27
46 254815_at AT4G12420 SKU5 (skewed 5); copper ion binding 1.14
47 254818_at AT4G12470 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 3.45
48 245386_at AT4G14010 RALFL32 (RALF-LIKE 32) 1.88
49 245359_at AT4G14430 enoyl-CoA hydratase/isomerase family protein 1.56
50 245352_at AT4G15490 UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups -1.29
51 245501_at AT4G15620 integral membrane family protein -1.69
52 245524_at AT4G15920 nodulin MtN3 family protein 1.59
53 245446_at AT4G16800 enoyl-CoA hydratase, putative 1.44
54 254596_at AT4G18975 pentatricopeptide (PPR) repeat-containing protein 1.70
55 254572_at AT4G19380 alcohol oxidase-related 1.07
56 254582_at AT4G19470 disease resistance protein-related -1.64
57 254585_at AT4G19500 disease resistance protein (TIR-NBS-LRR class), putative -3.31
58 254543_at AT4G19810 glycosyl hydrolase family 18 protein 1.16
59 254545_at AT4G19830 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein -1.83
60 254496_at AT4G20070 ATAAH (ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE); allantoate deiminase/ metallopeptidase -1.97
61 254513_at AT4G20235 pseudogene of cytochrome P450 1.96
62 254474_at AT4G20390 integral membrane family protein -1.95
63 254476_at AT4G20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN); transporter 3.44
64 254445_at AT4G20930 3-hydroxyisobutyrate dehydrogenase, putative -1.31
65 254415_at AT4G21326 ATSBT3.12; subtilase -2.28
66 254361_at AT4G22212 Encodes a defensin-like (DEFL) family protein. 2.16
67 254350_at AT4G22280 F-box family protein 1.13
68 254298_at AT4G22890 PGR5-LIKE A 1.44
69 254095_at AT4G25140 OLEO1 (OLEOSIN1) -2.66
70 254076_at AT4G25340 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related -1.35
71 245233_at AT4G25580 stress-responsive protein-related -1.34
72 253904_at AT4G27140 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 -1.60
73 253895_at AT4G27160 AT2S3; lipid binding / nutrient reservoir -2.40
74 253902_at AT4G27170 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 -5.05
75 253767_at AT4G28520 CRU3 (CRUCIFERIN 3); nutrient reservoir -1.66
76 253707_at AT4G29200 beta-galactosidase 3.87
77 253697_at AT4G29700 type I phosphodiesterase/nucleotide pyrophosphatase family protein 1.09
78 253531_at AT4G31540 ATEXO70G1 (exocyst subunit EXO70 family protein G1); protein binding 1.65
79 253422_at AT4G32240 unknown protein -1.79
80 253412_at AT4G33000 CBL10 (CALCINEURIN B-LIKE10); calcium ion binding 1.07
81 253239_at AT4G34500 protein kinase family protein 1.15
82 253073_at AT4G37410 CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4); oxygen binding -2.23
83 253024_at AT4G38080 hydroxyproline-rich glycoprotein family protein -1.79
84 252876_at AT4G39970 haloacid dehalogenase-like hydrolase family protein 1.53
85 251059_at AT5G01810 CIPK15 (CBL-INTERACTING PROTEIN KINASE 15); kinase/ protein kinase -1.30
86 250863_at AT5G04750 F1F0-ATPase inhibitor protein, putative 1.22
87 250780_at AT5G05290 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) 1.74
88 246036_at AT5G08370 ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2); alpha-galactosidase -1.33
89 245889_at AT5G09480 hydroxyproline-rich glycoprotein family protein -1.60
90 250468_at AT5G10120 ethylene insensitive 3 family protein -1.29
91 250313_at AT5G12210 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative 1.77
92 245178_at AT5G12390 binding 1.08
93 245181_at AT5G12420 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48523.1); contains InterPro domain Protein of unknown function UPF0089 (InterPro:IPR004255); contains InterPro domain Protein of unknown function DUF1298 (InterPro:IPR009721) -1.43
94 250211_at AT5G13880 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74736.1) 1.26
95 246497_at AT5G16220 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein 1.20
96 250012_x_at AT5G18060 auxin-responsive protein, putative 1.15
97 246072_at AT5G20240 PI (PISTILLATA); DNA binding / transcription factor 1.65
98 245993_at AT5G20700 senescence-associated protein-related -1.53
99 249848_at AT5G23220 NIC3 (NICOTINAMIDASE 3); catalytic/ nicotinamidase 2.01
100 249773_at AT5G24140 SQP2 (Squalene monooxygenase 2); oxidoreductase -1.72
101 249750_at AT5G24570 unknown protein -1.42
102 246897_at AT5G25560 zinc finger (C3HC4-type RING finger) family protein 1.12
103 246801_at AT5G26830 threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) 1.13
104 246748_at AT5G27730 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47900.1); similar to Os01g0931100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045294.1); similar to hypothetical protein OsI_004939 [Oryza sativa (indica cultivar-group)] (GB:EAY77092.1) 1.75
105 246743_at AT5G27750 F-box family protein 3.98
106 246699_at AT5G27990 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22510.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79569.1); contains domain PTHR21250 (PTHR21250) -1.70
107 246702_at AT5G28050 cytidine/deoxycytidylate deaminase family protein -1.78
108 249675_at AT5G35940 jacalin lectin family protein 1.83
109 249567_at AT5G38020 S-adenosyl-L-methionine:carboxyl methyltransferase family protein -1.66
110 249545_at AT5G38030 MATE efflux family protein -1.88
111 249353_at AT5G40420 OLEO2 (OLEOSIN 2) -1.43
112 249202_at AT5G42580 CYP705A12 (cytochrome P450, family 705, subfamily A, polypeptide 12); oxygen binding -1.94
113 249071_at AT5G44050 MATE efflux family protein -1.86
114 249039_at AT5G44310 late embryogenesis abundant domain-containing protein / LEA domain-containing protein -1.34
115 249033_at AT5G44920 Toll-Interleukin-Resistance (TIR) domain-containing protein -3.26
116 248970_at AT5G45380 sodium:solute symporter family protein -1.44
117 248956_at AT5G45610 binding 1.15
118 248911_at AT5G45830 DOG1 (DELAY OF GERMINATION 1) -2.66
119 248896_at AT5G46350 WRKY8 (WRKY DNA-binding protein 8); transcription factor -1.73
120 248819_at AT5G47050 ATP binding / protein binding / shikimate kinase/ zinc ion binding -1.32
121 248793_at AT5G47240 ATNUDT8 (Arabidopsis thaliana Nudix hydrolase homolog 8); hydrolase -1.51
122 248722_at AT5G47810 phosphofructokinase family protein -1.56
123 248725_at AT5G47980 transferase family protein 1.68
124 248734_at AT5G48090 ELP1 (EDM2-LIKE PROTEIN1); protein binding / zinc ion binding 1.88
125 248694_at AT5G48340 similar to unnamed protein product [Vitis vinifera] (GB:CAO70880.1) -1.62
126 248695_at AT5G48350 nucleic acid binding 3.35
127 248684_at AT5G48485 DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipid binding -1.47
128 248624_at AT5G48790 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49997.1) 2.19
129 247866_at AT5G57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3); hydrolase, acting on glycosyl bonds -1.42
130 247679_at AT5G59540 oxidoreductase, 2OG-Fe(II) oxygenase family protein 1.31
131 247377_at AT5G63180 pectate lyase family protein 1.72
132 247189_at AT5G65390 AGP7 (Arabinogalactan protein 7) 1.65
133 247116_at AT5G65970 MLO10 (MILDEW RESISTANCE LOCUS O 10); calmodulin binding 1.16
134 247092_at AT5G66380 ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1); binding / folic acid transporter 1.20