marker gene list
Mutant phyAphyB (Dark)
Mutant phyB (Dark)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 262121_at AT1G02800 ATCEL2 (Arabidopsis thaliana Cellulase 2); hydrolase, hydrolyzing O-glycosyl compounds 1.36
2 262105_at AT1G02810 pectinesterase family protein -1.22
3 265095_at AT1G03880 CRU2 (CRUCIFERIN 2); nutrient reservoir -2.06
4 265044_at AT1G03950 VPS2.3 1.48
5 265194_at AT1G05010 EFE (ETHYLENE FORMING ENZYME) -1.43
6 263231_at AT1G05680 UDP-glucoronosyl/UDP-glucosyl transferase family protein -1.27
7 260957_at AT1G06080 ADS1 (DELTA 9 DESATURASE 1); oxidoreductase 1.50
8 261785_at AT1G08230 amino acid transporter family protein 1.20
9 264508_at AT1G09570 PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ signal transducer -1.36
10 263260_at AT1G10570 Ulp1 protease family protein -1.66
11 260465_at AT1G10910 similar to PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) [Arabidopsis thaliana] (TAIR:AT1G74850.1); similar to hypothetical protein OsI_002384 [Oryza sativa (indica cultivar-group)] (GB:EAY74537.1); similar to putative PPR protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87953.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24702.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) -1.36
12 259529_at AT1G12400 DNA binding 1.69
13 261205_at AT1G12790 similar to unnamed protein product [Vitis vinifera] (GB:CAO44590.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994) 1.22
14 261485_at AT1G14360 ATUTR3/UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transporter 1.51
15 260744_at AT1G15010 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42242.1) -1.27
16 261766_at AT1G15580 IAA5 (indoleacetic acid-induced protein 5); transcription factor 1.46
17 262482_at AT1G17020 SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 1.29
18 262512_at AT1G17145 protein binding / zinc ion binding -1.25
19 260662_at AT1G19540 isoflavone reductase, putative 1.72
20 261135_at AT1G19610 LCR78/PDF1.4 (Low-molecular-weight cysteine-rich 78) -1.25
21 259568_at AT1G20490 AMP-dependent synthetase and ligase family protein 2.17
22 261449_at AT1G21120 O-methyltransferase, putative 2.01
23 264774_at AT1G22890 unknown protein -1.50
24 264729_at AT1G22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related -1.73
25 257410_at AT1G24340 EMB2421 (EMBRYO DEFECTIVE 2421); monooxygenase 1.29
26 260890_at AT1G29090 peptidase C1A papain family protein 1.36
27 261335_at AT1G44800 nodulin MtN21 family protein 1.58
28 260502_at AT1G47270 AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor -1.51
29 262434_at AT1G47670 amino acid transporter family protein -1.45
30 264187_at AT1G54860 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19250.1); similar to GPI-anchored protein-like protein II [Cucumis melo] (GB:ABR67421.1) -1.42
31 256354_at AT1G54870 oxidoreductase -1.53
32 245627_at AT1G56600 ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups 1.28
33 263138_at AT1G65090 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36100.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN81170.1) -1.25
34 262373_at AT1G73120 similar to hypothetical protein [Vitis vinifera] (GB:CAN69175.1) -1.18
35 260097_at AT1G73220 ATOCT1 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER1); carbohydrate transmembrane transporter/ carnitine transporter/ transporter 1.39
36 262177_at AT1G74710 ICS1 (ISOCHORISMATE SYNTHASEI); isochorismate synthase 1.47
37 266141_at AT2G02120 LCR70/PDF2.1 (Low-molecular-weight cysteine-rich 70); protease inhibitor -1.58
38 265699_at AT2G03550 hydrolase 1.66
39 263403_at AT2G04040 ATDTX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter -2.27
40 263295_at AT2G14210 ANR1; DNA binding / transcription factor 1.82
41 265575_at AT2G14260 PIP (proline iminopeptidase); prolyl aminopeptidase -2.85
42 267110_at AT2G14800 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44713.1) 1.50
43 265891_at AT2G15010 thionin, putative -1.67
44 265894_at AT2G15050 LTP; lipid binding 1.98
45 263330_at AT2G15320 leucine-rich repeat family protein 1.45
46 263098_at AT2G16005 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 4.27
47 265405_at AT2G16750 protein kinase family protein 1.56
48 264905_at AT2G17430 ATMLO7/MLO7 (MILDEW RESISTANCE LOCUS O 7); calmodulin binding -2.01
49 264846_at AT2G17850 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66170.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48196.1); contains InterPro domain Rhodanese-like (InterPro:IPR001763) 1.30
50 265327_at AT2G18210 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36500.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45855.1) 1.91
51 265921_at AT2G18490 zinc finger (C2H2 type) family protein 4.34
52 266941_at AT2G18980 peroxidase, putative 2.67
53 267336_at AT2G19310 similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to 18.5 kDa class I heat shock protein (HSP 18.5) (GB:P05478); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978) 2.34
54 263753_at AT2G21490 LEA (DEHYDRIN LEA) -1.44
55 263881_at AT2G21820 similar to hypothetical protein MtrDRAFT_AC155884g16v2 [Medicago truncatula] (GB:ABN08202.1) -1.43
56 267263_at AT2G23110 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23120.1); similar to seed maturation protein PM35 [Glycine max] (GB:AAD51623.1) -1.77
57 257354_x_at AT2G23480 transposable element gene -3.23
58 267128_at AT2G23620 esterase, putative 1.58
59 255877_at AT2G40460 proton-dependent oligopeptide transport (POT) family protein 1.23
60 267389_at AT2G44460 glycosyl hydrolase family 1 protein -1.31
61 259010_at AT3G07340 basic helix-loop-helix (bHLH) family protein -1.39
62 258993_at AT3G08940 LHCB4.2 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding -1.76
63 256275_at AT3G12110 ACT11 (ACTIN-11); structural constituent of cytoskeleton 1.55
64 257689_at AT3G12820 AtMYB10 (myb domain protein 10); DNA binding / transcription factor 1.66
65 257130_at AT3G20210 DELTA-VPE (delta vacuolar processing enzyme); cysteine-type endopeptidase 1.74
66 252663_at AT3G44070 beta-galactosidase 1.60
67 252587_at AT3G45620 transducin family protein / WD-40 repeat family protein -1.44
68 252543_at AT3G45780 PHOT1 (phototropin 1); kinase 1.58
69 252530_at AT3G46500 oxidoreductase, 2OG-Fe(II) oxygenase family protein -1.72
70 252480_at AT3G46580 MBD5 (methyl-CpG-binding domain 5); DNA binding -1.19
71 252458_at AT3G47210 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47250.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47250.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15956.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) 2.10
72 252462_at AT3G47250 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47200.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47200.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15956.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) 4.47
73 252412_at AT3G47295 unknown protein -1.18
74 252403_at AT3G48080 lipase class 3 family protein / disease resistance protein-related -1.19
75 252365_at AT3G48350 cysteine proteinase, putative 1.51
76 252357_at AT3G48410 hydrolase, alpha/beta fold family protein -1.30
77 252363_at AT3G48460 GDSL-motif lipase/hydrolase family protein 1.32
78 252324_at AT3G48570 protein transport protein SEC61 gamma subunit, putative 1.48
79 252137_at AT3G50980 XERO1 (DEHYDRIN XERO 1) 1.61
80 251971_at AT3G53160 UGT73C7 (UDP-GLUCOSYL TRANSFERASE 73C7); UDP-glycosyltransferase/ transferase, transferring glycosyl groups -1.38
81 251899_at AT3G54400 aspartyl protease family protein 1.17
82 251814_at AT3G54890 LHCA1; chlorophyll binding -1.52
83 251731_at AT3G56350 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative -1.59
84 246344_at AT3G56730 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17351.1); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) 1.17
85 251658_at AT3G57020 strictosidine synthase family protein -1.51
86 251646_at AT3G57780 similar to nucleolar protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G42320.1); similar to nucleolar protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G42320.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO23533.1) 1.18
87 251509_at AT3G59010 pectinesterase family protein 3.68
88 251465_at AT3G59360 ATUTR6/UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transmembrane transporter 1.24
89 251346_at AT3G60980 pentatricopeptide (PPR) repeat-containing protein -1.56
90 251347_at AT3G61010 glycosyl hydrolase family protein 85 -3.58
91 251358_at AT3G61160 shaggy-related protein kinase beta / ASK-beta (ASK2) 1.34
92 251293_at AT3G61930 unknown protein 1.50
93 251219_at AT3G62390 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40116.1); contains InterPro domain Protein of unknown function DUF231, plant (InterPro:IPR004253) 1.27
94 251165_at AT3G63330 protein kinase family protein -2.99
95 255659_at AT4G00895 ATP synthase delta chain-related -1.19
96 255621_at AT4G01390 meprin and TRAF homology domain-containing protein / MATH domain-containing protein 4.39
97 255577_at AT4G01410 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein -1.27
98 255543_at AT4G01870 tolB protein-related 1.21
99 255546_at AT4G01910 DC1 domain-containing protein -5.07
100 255473_at AT4G02450 glycine-rich protein -2.39
101 255483_at AT4G02500 ATXT2; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups 1.37
102 255484_at AT4G02540 DC1 domain-containing protein -3.69
103 255414_at AT4G03156 small GTPase-related 6.86
104 255345_at AT4G04460 aspartyl protease family protein -4.64
105 255302_at AT4G04830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein 1.59
106 255310_at AT4G04955 ATALN (ARABIDOPSIS ALLANTOINASE); allantoinase/ hydrolase 1.22
107 255260_at AT4G05040 ankyrin repeat family protein -1.64
108 255257_at AT4G05050 UBQ11 (UBIQUITIN 11); protein binding 4.53
109 255248_at AT4G05180 PSBQ/PSBQ-2/PSII-Q (PHOTOSYSTEM II SUBUNIT Q-2); calcium ion binding -1.79
110 255067_at AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein 1.46
111 255080_at AT4G09030 AGP10 (Arabinogalactan protein 10) 1.15
112 254998_at AT4G09760 choline kinase, putative -1.43
113 255012_at AT4G10030 hydrolase, alpha/beta fold family protein -1.21
114 254798_at AT4G13050 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative -1.52
115 254759_at AT4G13180 short-chain dehydrogenase/reductase (SDR) family protein 1.28
116 245310_at AT4G13950 RALFL31 (RALF-LIKE 31) 1.39
117 245386_at AT4G14010 RALFL32 (RALF-LIKE 32) 2.30
118 245331_at AT4G14410 basic helix-loop-helix (bHLH) family protein 1.40
119 245359_at AT4G14430 enoyl-CoA hydratase/isomerase family protein 1.72
120 245612_at AT4G14440 enoyl-CoA hydratase/isomerase family protein 1.14
121 245543_at AT4G15260 UDP-glucoronosyl/UDP-glucosyl transferase family protein -2.21
122 245556_at AT4G15400 transferase family protein 1.31
123 245352_at AT4G15490 UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups -1.93
124 245277_at AT4G15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups -1.59
125 245501_at AT4G15620 integral membrane family protein -1.84
126 245524_at AT4G15920 nodulin MtN3 family protein 2.05
127 245478_at AT4G16130 ARA1 (ARABINOSE KINASE); ATP binding / galactokinase -1.42
128 245349_at AT4G16690 esterase/lipase/thioesterase family protein -1.24
129 245446_at AT4G16800 enoyl-CoA hydratase, putative 1.99
130 245350_at AT4G16830 nuclear RNA-binding protein (RGGA) -1.32
131 245318_at AT4G16980 arabinogalactan-protein family 1.32
132 245463_at AT4G17030 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) 1.70
133 245305_at AT4G17215 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47635.1); similar to hypothetical protein 40.t00006 [Brassica oleracea] (GB:ABD65131.1) 1.99
134 245355_at AT4G17390 60S ribosomal protein L15 (RPL15B) 1.22
135 254693_at AT4G17880 basic helix-loop-helix (bHLH) family protein -1.41
136 254667_at AT4G18280 glycine-rich cell wall protein-related -1.29
137 254620_at AT4G18590 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52630.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52630.1); similar to unknown [Populus trichocarpa] (GB:ABK94610.1); contains InterPro domain Replication factor A protein 3 (InterPro:IPR013970); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) -1.24
138 254633_at AT4G18640 MRH1 (morphogenesis of root hair 1); ATP binding / protein serine/threonine kinase 1.30
139 254596_at AT4G18975 pentatricopeptide (PPR) repeat-containing protein 2.31
140 254612_at AT4G19100 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52780.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79943.1) -1.74
141 254573_at AT4G19420 pectinacetylesterase family protein 1.39
142 254582_at AT4G19470 disease resistance protein-related -1.80
143 254585_at AT4G19500 disease resistance protein (TIR-NBS-LRR class), putative -3.85
144 254537_at AT4G19730 glycosyl hydrolase family 18 protein 4.89
145 254543_at AT4G19810 glycosyl hydrolase family 18 protein 2.11
146 254496_at AT4G20070 ATAAH (ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE); allantoate deiminase/ metallopeptidase -2.29
147 254500_at AT4G20110 vacuolar sorting receptor, putative -1.38
148 254481_at AT4G20480 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06810.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to hypothetical protein OsI_026076 [Oryza sativa (indica cultivar-group)] (GB:EAZ04844.1); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) -1.69
149 254447_at AT4G20860 FAD-binding domain-containing protein -2.18
150 254453_at AT4G21120 AAT1 (CATIONIC AMINO ACID TRANSPORTER 1); cationic amino acid transmembrane transporter -1.35
151 254377_at AT4G21650 subtilase family protein -4.14
152 254387_at AT4G21850 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein 1.93
153 254350_at AT4G22280 F-box family protein 1.26
154 254332_at AT4G22730 leucine-rich repeat transmembrane protein kinase, putative -1.33
155 254187_at AT4G23890 similar to unnamed protein product [Vitis vinifera] (GB:CAO69542.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73381.1) -1.56
156 254095_at AT4G25140 OLEO1 (OLEOSIN1) -2.01
157 253902_at AT4G27170 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 -2.19
158 253915_at AT4G27280 calcium-binding EF hand family protein 1.18
159 253767_at AT4G28520 CRU3 (CRUCIFERIN 3); nutrient reservoir -1.43
160 253749_at AT4G29080 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2); transcription factor -1.35
161 253697_at AT4G29700 type I phosphodiesterase/nucleotide pyrophosphatase family protein 1.31
162 253073_at AT4G37410 CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4); oxygen binding -1.60
163 253042_at AT4G37550 formamidase, putative / formamide amidohydrolase, putative -1.38
164 253048_at AT4G37560 formamidase, putative / formamide amidohydrolase, putative -1.65
165 252876_at AT4G39970 haloacid dehalogenase-like hydrolase family protein 1.57
166 250780_at AT5G05290 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) 1.57
167 250476_at AT5G10140 FLC (FLOWERING LOCUS C); transcription factor 2.84
168 249996_at AT5G18600 glutaredoxin family protein -1.43
169 249666_at AT5G35840 PHYC (PHYTOCHROME DEFECTIVE C) -1.22
170 249614_at AT5G37300 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38995.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48523.1); contains InterPro domain Protein of unknown function UPF0089 (InterPro:IPR004255); contains InterPro domain Protein of unknown function DUF1298 (InterPro:IPR009721) 2.15
171 249567_at AT5G38020 S-adenosyl-L-methionine:carboxyl methyltransferase family protein -3.05
172 249545_at AT5G38030 MATE efflux family protein -2.33
173 249527_at AT5G38710 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative 1.45
174 249469_at AT5G39320 UDP-glucose 6-dehydrogenase, putative 1.87
175 249386_at AT5G40060 pseudogene of disease resistance protein (TIR-NBS-LRR class) 1.19
176 249353_at AT5G40420 OLEO2 (OLEOSIN 2) -1.28
177 249331_at AT5G40950 RPL27; structural constituent of ribosome -1.71
178 249259_at AT5G41660 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44430.1) -1.87
179 249268_at AT5G41685 mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) 1.30
180 249265_at AT5G41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8); ubiquitin-protein ligase 2.57
181 249242_at AT5G42250 alcohol dehydrogenase, putative 1.21
182 249202_at AT5G42580 CYP705A12 (cytochrome P450, family 705, subfamily A, polypeptide 12); oxygen binding -1.59
183 249117_at AT5G43840 AT-HSFA6A (Arabidopsis thaliana heat shock transcription factor A6A); DNA binding / transcription factor -1.76
184 249071_at AT5G44050 MATE efflux family protein -1.50
185 249065_at AT5G44260 zinc finger (CCCH-type) family protein -1.30
186 247866_at AT5G57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3); hydrolase, acting on glycosyl bonds -1.22
187 247882_at AT5G57785 unknown protein 1.20
188 247718_at AT5G59310 LTP4 (LIPID TRANSFER PROTEIN 4); lipid binding 1.55