marker gene list
Mutant phyA (Red Light 1h)
Mutant phyA (Dark)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 261046_at AT1G01390 UDP-glucoronosyl/UDP-glucosyl transferase family protein -1.25
2 259432_at AT1G01520 myb family transcription factor -1.81
3 264169_at AT1G02020 nitroreductase family protein 0.82
4 264170_at AT1G02260 transmembrane protein, putative 0.71
5 260914_at AT1G02640 BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds 0.86
6 262121_at AT1G02800 ATCEL2 (Arabidopsis thaliana Cellulase 2); hydrolase, hydrolyzing O-glycosyl compounds 0.86
7 262105_at AT1G02810 pectinesterase family protein -1.35
8 264835_at AT1G03550 secretory carrier membrane protein (SCAMP) family protein -1.63
9 265044_at AT1G03950 VPS2.3 1.97
10 264611_at AT1G04680 pectate lyase family protein 0.85
11 264577_at AT1G05260 RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase 0.92
12 264580_at AT1G05340 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32210.1) -1.25
13 263179_at AT1G05710 ethylene-responsive protein, putative 0.86
14 260955_at AT1G06000 UDP-glucoronosyl/UDP-glucosyl transferase family protein -2.14
15 260957_at AT1G06080 ADS1 (DELTA 9 DESATURASE 1); oxidoreductase 1.73
16 260785_at AT1G06200 serine-type peptidase/ signal peptidase -1.25
17 261466_at AT1G07690 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54950.1) 1.16
18 261785_at AT1G08230 amino acid transporter family protein 1.18
19 264262_at AT1G09200 histone H3 0.91
20 264508_at AT1G09570 PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ signal transducer -1.22
21 264669_at AT1G09630 ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding 0.79
22 264672_at AT1G09750 chloroplast nucleoid DNA-binding protein-related 0.68
23 264435_at AT1G10360 ATGSTU18 (GLUTATHIONE S-TRANSFERASE 29); glutathione transferase -1.21
24 264436_at AT1G10370 ATGSTU17/ERD9/GST30/GST30B (EARLY-RESPONSIVE TO DEHYDRATION 9); glutathione transferase -1.50
25 263260_at AT1G10570 Ulp1 protease family protein -1.23
26 260465_at AT1G10910 similar to PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) [Arabidopsis thaliana] (TAIR:AT1G74850.1); similar to hypothetical protein OsI_002384 [Oryza sativa (indica cultivar-group)] (GB:EAY74537.1); similar to putative PPR protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87953.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24702.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) -1.53
27 260464_at AT1G10920 LOV1; ATP binding / protein binding 1.54
28 262821_at AT1G11800 endonuclease/exonuclease/phosphatase family protein 1.03
29 261023_at AT1G12200 flavin-containing monooxygenase family protein / FMO family protein 1.28
30 259529_at AT1G12400 DNA binding 2.22
31 255933_at AT1G12750 rhomboid family protein 1.02
32 261205_at AT1G12790 similar to unnamed protein product [Vitis vinifera] (GB:CAO44590.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994) 2.37
33 261203_at AT1G12845 similar to hypothetical protein MtrDRAFT_AC149131g9v2 [Medicago truncatula] (GB:ABD32556.1) 1.15
34 261201_at AT1G12850 phosphoglycerate/bisphosphoglycerate mutase family protein 0.95
35 262826_at AT1G13080 CYP71B2 (CYTOCHROME P450 71B2); oxygen binding 1.00
36 259366_at AT1G13280 AOC4 (ALLENE OXIDE CYCLASE 4) 0.74
37 261263_at AT1G26790 Dof-type zinc finger domain-containing protein -1.46
38 260890_at AT1G29090 peptidase C1A papain family protein 1.85
39 260727_at AT1G48100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein -1.64
40 260646_at AT1G53340 DC1 domain-containing protein 1.08
41 264920_at AT1G60550 naphthoate synthase, putative / dihydroxynaphthoic acid synthetase, putative / DHNA synthetase, putative -1.38
42 261958_at AT1G64500 glutaredoxin family protein -2.08
43 245734_at AT1G73480 hydrolase, alpha/beta fold family protein -1.21
44 260387_at AT1G74100 sulfotransferase family protein 0.80
45 260248_at AT1G74310 ATHSP101 (HEAT SHOCK PROTEIN 101); ATP binding / ATPase -1.91
46 260237_at AT1G74430 MYB95 (myb domain protein 95); DNA binding / transcription factor -1.22
47 262206_at AT2G01090 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative 4.33
48 265863_at AT2G01770 VIT1 (VACUOLAR IRON TRANSPORTER 1); iron ion transmembrane transporter 1.06
49 267110_at AT2G14800 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44713.1) 1.67
50 263739_at AT2G21320 zinc finger (B-box type) family protein -1.90
51 266832_at AT2G30040 MAPKKK14 (Mitogen-activated protein kinase kinase kinase 14); kinase -1.29
52 267516_at AT2G30520 RPT2 (ROOT PHOTOTROPISM 2); protein binding -1.40
53 263252_at AT2G31380 STH (salt tolerance homologue); transcription factor/ zinc ion binding -1.78
54 267548_at AT2G32660 disease resistance family protein / LRR family protein 0.70
55 265211_at AT2G36640 ATECP63 (EMBRYONIC CELL PROTEIN 63) 0.80
56 267010_at AT2G39250 SNZ (SCHNARCHZAPFEN); DNA binding / transcription factor -1.36
57 263385_at AT2G40170 ATEM6/GEA6 (ARABIDOPSIS EARLY METHIONINE-LABELLED 6) 0.68
58 258498_at AT3G02480 ABA-responsive protein-related 1.03
59 258609_at AT3G02910 Identical to UPF0131 protein At3g02910 [Arabidopsis Thaliana] (GB:Q9M8T3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46720.1); similar to Os03g0854000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051934.1); similar to unknown [Picea sitchensis] (GB:ABK22133.1); contains InterPro domain Butirosin biosynthesis, BtrG-like (InterPro:IPR013024); contains InterPro domain Protein of unknown function UPF0131 (InterPro:IPR005347) -1.62
60 258742_at AT3G05800 transcription factor -1.54
61 258528_at AT3G06770 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein 0.76
62 256245_at AT3G12580 HSP70 (heat shock protein 70); ATP binding -1.56
63 258367_at AT3G14370 WAG2; kinase 0.67
64 258167_at AT3G21560 UGT84A2; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase -1.36
65 258181_at AT3G21670 nitrate transporter (NTP3) -1.67
66 258321_at AT3G22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding -1.66
67 258133_at AT3G24500 ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor -1.72
68 252123_at AT3G51240 F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase -2.63
69 252048_at AT3G52500 aspartyl protease family protein 0.81
70 251811_at AT3G54990 SMZ (SCHLAFMUTZE); DNA binding / transcription factor -1.22
71 255298_at AT4G04840 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein -1.73
72 254954_at AT4G10910 unknown protein 1.20
73 254907_at AT4G11190 disease resistance-responsive family protein / dirigent family protein 0.95
74 245401_at AT4G17670 senescence-associated protein-related -1.31
75 254543_at AT4G19810 glycosyl hydrolase family 18 protein 0.76
76 254419_at AT4G21490 NDB3; NADH dehydrogenase 0.67
77 254066_at AT4G25480 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription activator/ transcription factor -1.40
78 253660_at AT4G30140 GDSL-motif lipase/hydrolase family protein 1.01
79 251020_at AT5G02270 ATNAP9 (Non-intrinsic ABC protein 9) -1.82
80 250810_at AT5G05090 myb family transcription factor 0.69
81 250468_at AT5G10120 ethylene insensitive 3 family protein 0.83
82 250099_at AT5G17300 myb family transcription factor -1.19
83 249798_at AT5G23730 nucleotide binding -1.78
84 249769_at AT5G24120 SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor -2.38
85 246966_at AT5G24850 CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding -1.26
86 249127_at AT5G43500 ATARP9 (ACTIN-RELATED PROTEIN 9); protein binding 1.27
87 249063_at AT5G44110 POP1 -2.67
88 248657_at AT5G48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative -1.79
89 248347_at AT5G52250 transducin family protein / WD-40 repeat family protein -1.99
90 247293_at AT5G64510 similar to unnamed protein product [Vitis vinifera] (GB:CAO49799.1) -1.23