marker gene list
Mutant phyB (Red Light 1h)
Mutant phyB (Red Light 1h)
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 260957_at AT1G06080 ADS1 (DELTA 9 DESATURASE 1); oxidoreductase 1.56
2 255939_at AT1G12730 cell division cycle protein-related 1.34
3 261205_at AT1G12790 similar to unnamed protein product [Vitis vinifera] (GB:CAO44590.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994) 3.29
4 261487_at AT1G14340 RNA recognition motif (RRM)-containing protein 1.11
5 262857_at AT1G14930 major latex protein-related / MLP-related 1.96
6 262756_at AT1G16370 ATOCT6; carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter -1.11
7 262519_at AT1G17160 pfkB-type carbohydrate kinase family protein -1.11
8 262518_at AT1G17170 ATGSTU24 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE (CLASS TAU) 24); glutathione transferase -1.55
9 261431_at AT1G18710 AtMYB47 (myb domain protein 47); DNA binding / transcription factor -1.26
10 259479_at AT1G19020 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40966.1) -1.16
11 260662_at AT1G19540 isoflavone reductase, putative 1.23
12 261135_at AT1G19610 LCR78/PDF1.4 (Low-molecular-weight cysteine-rich 78) -1.31
13 264751_at AT1G23020 ATFRO3/FRO3 (FERRIC REDUCTION OXIDASE 3); ferric-chelate reductase -1.17
14 263010_at AT1G23330 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10740.1); similar to Os05g0408300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055523.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42648.1); contains domain SSF53474 (SSF53474); contains domain G3DSA:3.40.50.1820 (G3DSA:3.40.50.1820) -1.17
15 263023_at AT1G23960 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23970.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462) 7.49
16 264873_at AT1G24100 UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups 1.26
17 264987_at AT1G27030 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05517.1); similar to Os10g0463800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064789.1) 1.15
18 262299_at AT1G27520 glycoside hydrolase family 47 protein -1.82
19 261618_at AT1G33110 MATE efflux family protein -1.66
20 259653_at AT1G55240 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63741.1); contains InterPro domain Protein of unknown function DUF716 (InterPro:IPR006904) -1.06
21 260234_at AT1G74460 GDSL-motif lipase/hydrolase family protein -1.39
22 259987_at AT1G75030 ATLP-3 (Arabidopsis thaumatin-like protein 3) -1.14
23 264960_at AT1G76930 ATEXT4 (EXTENSIN 4) 1.56
24 264949_at AT1G77080 MAF1 (MADS AFFECTING FLOWERING 1); transcription factor -1.56
25 264953_at AT1G77120 ADH1 (ALCOHOL DEHYDROGENASE 1) 1.13
26 260805_at AT1G78320 ATGSTU23 (Arabidopsis thaliana Glutathione S-transferase (class tau) 23); glutathione transferase -1.64
27 261345_at AT1G79760 DTA4 (DOWNSTREAM TARGET OF AGL15-4) -2.35
28 262040_at AT1G80080 TMM (TOO MANY MOUTHS); protein binding 1.48
29 262061_at AT1G80110 ATPP2-B11; carbohydrate binding 1.13
30 266141_at AT2G02120 LCR70/PDF2.1 (Low-molecular-weight cysteine-rich 70); protease inhibitor -1.80
31 265366_at AT2G13290 glycosyl transferase family 17 protein 1.25
32 263276_at AT2G14100 CYP705A13 (cytochrome P450, family 705, subfamily A, polypeptide 13); oxygen binding 2.94
33 265575_at AT2G14260 PIP (proline iminopeptidase); prolyl aminopeptidase -2.74
34 265894_at AT2G15050 LTP; lipid binding 1.54
35 263098_at AT2G16005 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 2.73
36 263582_at AT2G17120 LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR) 1.16
37 265327_at AT2G18210 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36500.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45855.1) 2.58
38 266065_at AT2G18790 PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ signal transducer -1.25
39 266941_at AT2G18980 peroxidase, putative 2.04
40 267336_at AT2G19310 similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to 18.5 kDa class I heat shock protein (HSP 18.5) (GB:P05478); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978) 2.17
41 264007_at AT2G21140 ATPRP2 (PROLINE-RICH PROTEIN 2) -1.11
42 263881_at AT2G21820 similar to hypothetical protein MtrDRAFT_AC155884g16v2 [Medicago truncatula] (GB:ABN08202.1) -1.28
43 263428_at AT2G22310 ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease 1.18
44 263998_at AT2G22510 hydroxyproline-rich glycoprotein family protein -1.70
45 264054_at AT2G22540 SVP (SHORT VEGETATIVE PHASE); transcription factor 1.85
46 267121_at AT2G23540 GDSL-motif lipase/hydrolase family protein -1.14
47 267127_at AT2G23610 esterase, putative 1.68
48 265615_at AT2G25450 2-oxoglutarate-dependent dioxygenase, putative -4.51
49 265907_at AT2G25650 DNA-binding storekeeper protein-related -1.96
50 255840_at AT2G33520 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G12810.1) -1.17
51 266625_at AT2G35380 peroxidase 20 (PER20) (P20) -1.27
52 266988_at AT2G39310 jacalin lectin family protein -1.48
53 260611_at AT2G43670 glycosyl hydrolase family protein 17 -1.14
54 258975_at AT3G01970 WRKY45 (WRKY DNA-binding protein 45); transcription factor -1.41
55 259121_at AT3G02220 similar to hypothetical protein [Cleome spinosa] (GB:ABD96929.1); contains domain PTHR22876:SF1 (PTHR22876:SF1); contains domain PTHR22876 (PTHR22876) 1.15
56 258905_at AT3G06390 integral membrane family protein -1.69
57 252703_at AT3G43740 leucine-rich repeat family protein -1.36
58 251531_at AT3G58550 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein -1.43
59 255811_at AT4G10250 ATHSP22.0 (Arabidopsis thaliana heat shock protein 22.0) 1.33
60 254907_at AT4G11190 disease resistance-responsive family protein / dirigent family protein 1.28
61 254889_at AT4G11650 ATOSM34 (OSMOTIN 34) 1.80
62 254894_at AT4G11840 PLDGAMMA3 (phospholipase D gamma 3); phospholipase D -1.25
63 254815_at AT4G12420 SKU5 (skewed 5); copper ion binding 1.28
64 254818_at AT4G12470 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 3.78
65 254759_at AT4G13180 short-chain dehydrogenase/reductase (SDR) family protein 1.10
66 245310_at AT4G13950 RALFL31 (RALF-LIKE 31) 1.25
67 245386_at AT4G14010 RALFL32 (RALF-LIKE 32) 1.80
68 245359_at AT4G14430 enoyl-CoA hydratase/isomerase family protein 1.57
69 245556_at AT4G15400 transferase family protein 1.36
70 245352_at AT4G15490 UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups -1.51
71 245446_at AT4G16800 enoyl-CoA hydratase, putative 1.53
72 245456_at AT4G16950 RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) 1.13
73 245422_at AT4G17470 palmitoyl protein thioesterase family protein -1.11
74 254622_at AT4G18375 KH domain-containing protein -2.28
75 254596_at AT4G18975 pentatricopeptide (PPR) repeat-containing protein 1.56
76 254573_at AT4G19420 pectinacetylesterase family protein 1.20
77 254577_at AT4G19450 nodulin-related -1.05
78 254582_at AT4G19470 disease resistance protein-related -2.17
79 254585_at AT4G19500 disease resistance protein (TIR-NBS-LRR class), putative -5.40
80 254543_at AT4G19810 glycosyl hydrolase family 18 protein 1.88
81 254545_at AT4G19830 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein -2.05
82 254496_at AT4G20070 ATAAH (ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE); allantoate deiminase/ metallopeptidase -2.42
83 254513_at AT4G20235 pseudogene of cytochrome P450 1.82
84 254474_at AT4G20390 integral membrane family protein -1.67
85 254476_at AT4G20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN); transporter 3.20
86 254445_at AT4G20930 3-hydroxyisobutyrate dehydrogenase, putative -1.38
87 254415_at AT4G21326 ATSBT3.12; subtilase -2.88
88 254373_at AT4G21730 pseudogene of N-ethylmaleimide sensitive factor (NSF) -1.86
89 254343_at AT4G21990 APR3 (APS REDUCTASE 3) -1.20
90 254361_at AT4G22212 Encodes a defensin-like (DEFL) family protein. 1.89
91 254350_at AT4G22280 F-box family protein 1.35
92 254298_at AT4G22890 PGR5-LIKE A 1.32
93 254215_at AT4G23700 ATCHX17 (CATION/H+ EXCHANGER 17); monovalent cation:proton antiporter 1.23
94 254098_at AT4G25100 FSD1 (FE SUPEROXIDE DISMUTASE 1); iron superoxide dismutase -1.19
95 254076_at AT4G25340 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related -1.68
96 245235_at AT4G25550 protein binding -1.26
97 254016_at AT4G26150 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor 1.42
98 253707_at AT4G29200 beta-galactosidase 4.60
99 253697_at AT4G29700 type I phosphodiesterase/nucleotide pyrophosphatase family protein 1.13
100 253548_at AT4G30993 similar to hypothetical protein [Vitis vinifera] (GB:CAN67945.1); contains domain Metallo-dependent phosphatases (SSF56300) -1.18
101 253534_at AT4G31500 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding -1.27
102 253422_at AT4G32240 unknown protein -2.08
103 253239_at AT4G34500 protein kinase family protein 1.51
104 253253_at AT4G34750 auxin-responsive protein, putative / small auxin up RNA (SAUR_E) 1.18
105 253073_at AT4G37410 CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4); oxygen binding -2.27
106 253024_at AT4G38080 hydroxyproline-rich glycoprotein family protein -1.50
107 252876_at AT4G39970 haloacid dehalogenase-like hydrolase family protein 1.27
108 251059_at AT5G01810 CIPK15 (CBL-INTERACTING PROTEIN KINASE 15); kinase/ protein kinase -1.49
109 250992_at AT5G02260 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) -1.06
110 251003_at AT5G02690 unknown protein 2.02
111 250931_at AT5G03200 zinc finger (C3HC4-type RING finger) family protein -2.75
112 250944_at AT5G03380 heavy-metal-associated domain-containing protein 1.14
113 250952_at AT5G03570 iron-responsive transporter-related 1.44
114 250863_at AT5G04750 F1F0-ATPase inhibitor protein, putative 1.45
115 250780_at AT5G05290 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) 1.93
116 250633_at AT5G07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2); peptide-methionine-(S)-S-oxide reductase -1.35
117 246036_at AT5G08370 ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2); alpha-galactosidase -1.58
118 250530_at AT5G08630 DDT domain-containing protein 1.25
119 245889_at AT5G09480 hydroxyproline-rich glycoprotein family protein -1.46
120 250433_at AT5G10400 histone H3 1.28
121 245906_at AT5G11070 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35090.1) 1.20
122 250313_at AT5G12210 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative 1.68
123 250211_at AT5G13880 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74736.1) 1.52
124 250135_at AT5G15360 unknown protein 1.14
125 246497_at AT5G16220 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein 1.48
126 250012_x_at AT5G18060 auxin-responsive protein, putative 1.21
127 249918_at AT5G19240 Identical to Uncharacterized GPI-anchored protein At5g19240 precursor [Arabidopsis Thaliana] (GB:Q84VZ5;GB:Q8H7A4); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19230.1); similar to unknown [Populus trichocarpa] (GB:ABK94712.1) 1.22
128 246099_at AT5G20230 ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN); copper ion binding -1.15
129 246072_at AT5G20240 PI (PISTILLATA); DNA binding / transcription factor 1.93
130 246087_at AT5G20580 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06005.1); similar to unknown [Populus trichocarpa] (GB:ABK93352.1); contains InterPro domain Prefoldin (InterPro:IPR009053) -1.04
131 249904_at AT5G22700 F-box family protein 1.27
132 249848_at AT5G23220 NIC3 (NICOTINAMIDASE 3); catalytic/ nicotinamidase 2.70
133 249812_at AT5G23830 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein -5.46
134 249783_at AT5G24270 SOS3 (SALT OVERLY SENSITIVE 3) -2.01
135 249741_at AT5G24470 APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator -1.15
136 249750_at AT5G24570 unknown protein -1.19
137 246905_at AT5G25570 similar to unnamed protein product [Vitis vinifera] (GB:CAO44135.1) 4.06
138 246911_at AT5G25810 TNY (TINY); DNA binding / transcription factor 1.19
139 246733_at AT5G27660 serine-type peptidase/ trypsin 1.13
140 246735_at AT5G27670 HTA7; DNA binding -1.15
141 246748_at AT5G27730 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47900.1); similar to Os01g0931100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045294.1); similar to hypothetical protein OsI_004939 [Oryza sativa (indica cultivar-group)] (GB:EAY77092.1) 1.66
142 246699_at AT5G27990 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22510.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79569.1); contains domain PTHR21250 (PTHR21250) -1.28
143 246702_at AT5G28050 cytidine/deoxycytidylate deaminase family protein -1.67
144 249675_at AT5G35940 jacalin lectin family protein 1.29
145 249567_at AT5G38020 S-adenosyl-L-methionine:carboxyl methyltransferase family protein -1.80
146 249545_at AT5G38030 MATE efflux family protein -2.36
147 249469_at AT5G39320 UDP-glucose 6-dehydrogenase, putative 1.16
148 249205_at AT5G42600 MRN (MARNERAL SYNTHASE); catalytic -2.66
149 249166_at AT5G42840 DC1 domain-containing protein -1.07
150 249117_at AT5G43840 AT-HSFA6A (Arabidopsis thaliana heat shock transcription factor A6A); DNA binding / transcription factor -2.21
151 249008_at AT5G44680 methyladenine glycosylase family protein 1.24
152 249016_at AT5G44750 REV1 (Reversionless 1); damaged DNA binding / magnesium ion binding / nucleotidyltransferase -1.21
153 249033_at AT5G44920 Toll-Interleukin-Resistance (TIR) domain-containing protein -4.06
154 248970_at AT5G45380 sodium:solute symporter family protein -1.45
155 248951_at AT5G45550 mob1/phocein family protein 1.16
156 248911_at AT5G45830 DOG1 (DELAY OF GERMINATION 1) -3.42
157 248921_at AT5G45950 GDSL-motif lipase/hydrolase family protein -1.11
158 248896_at AT5G46350 WRKY8 (WRKY DNA-binding protein 8); transcription factor -1.56
159 248906_at AT5G46420 16S rRNA processing protein RimM family -1.05
160 248838_at AT5G46800 BOU (A BOUT DE SOUFFLE); binding -1.05
161 248819_at AT5G47050 ATP binding / protein binding / shikimate kinase/ zinc ion binding -1.40
162 248821_at AT5G47070 protein kinase, putative 1.49
163 248793_at AT5G47240 ATNUDT8 (Arabidopsis thaliana Nudix hydrolase homolog 8); hydrolase -1.53
164 248725_at AT5G47980 transferase family protein 1.28
165 248734_at AT5G48090 ELP1 (EDM2-LIKE PROTEIN1); protein binding / zinc ion binding 1.87
166 248624_at AT5G48790 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49997.1) 2.13
167 248186_at AT5G53880 similar to unknown [Populus trichocarpa] (GB:ABK92577.1) 1.25
168 248178_at AT5G54370 late embryogenesis abundant protein-related / LEA protein-related 1.22
169 247377_at AT5G63180 pectate lyase family protein 1.50
170 247359_at AT5G63560 transferase family protein -1.33
171 247189_at AT5G65390 AGP7 (Arabinogalactan protein 7) 1.90
172 247092_at AT5G66380 ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1); binding / folic acid transporter 1.14