3.1:History
| Date | Version | information |
|---|---|---|
| 2016.3.15 | 3.1.beta |
A new function "Search experiments by differently expressed genes (DEGs)" added. Statistic information page renewal with improved annotations MA plot to show the selection of modules 93 RNA-seq experiments added. Speed up of calculation (x10) and more |
| 2015.10.15 | 3.04 | 414 Microarray experiments added. |
| 2015.8.12 | 3.03 |
A probrem about generating some pages in user analysis solved. This was because of an update of RSQLite that is used via R scripts. |
| 2015.4.16 | 3.02 |
User analyses run on a job queueing system to prevent overflow.. Bug (Recognition of AGI code sometimes fails) fixed. |
| 2015.3.23 | 3.01 |
Input of Microsoft Excel files (.xls and .xlsx) is supported. Bug (Input of user data from Windows fails) fixed. |
| 2014.7.10 | 3.00 |
Bug fixed. Released. [Kakei Y and Shimada Y. (2015) AtCAST3.0 Update: A Web-Based Tool for Analysis of Transcriptome Data by Searching Similarities in Gene Expression Profiles., Plant Cell Physiol., 56 (1): e7. ] |
| 2014.2.10 | 3.00β |
Renewal version. 7000+ public microarray data were added. AtCAST3.0 supports muilti-platform of DNA Microarray data, i.e. Affimetrix AG, ATH1 and Arabidopsis Gene 1.1 ST Array chips. Input of RNA-seq count data is also supported. GO term enrichment analysis of Modules is added. UI and Visual design of network graph was changed. |
| 2012.8.17 | 2.06 | Correlation experiment list fixed. UI fixed. |
| 2012.7.4 | 2.05 | Bug fixed. |
| 2012.5.21 | 2.04 | Added the sort (by p-value or q-value) to results of t-test for each probe sets. |
| 2009.12.7 | 2.03 |
Data fixed.
[Sasaki E, Takahashi C, Asami T and Shimada Y. (2011) AtCAST, a tool for exploring gene expression similarities among DNA microarray experiments using networks., Plant Cell Physiol., 52:169-180.] |
| 2009 | 2.02β | Data fixed. |
| 2009 | 2.01β | Data fixed. |
| 2009.7.23 | 2.00β | We released beta version of the new tool for analysing user own experiments. |
"To-Do" list
- (2014. 10. 14)Prepare the result of GOE analysis with html table
- (2014. 10. 14)Add control/sample name in "Statistical Infomation" page
- (2015. 4. 16)Make download link of expression data from "Analysis result" page
- (2015. 4. 16)Make download link of promoter sequences from
"Analysis result:Information of module " page