Mapping of Exon combinations: alternative splicing and alternative start site
Alteration of transcript structure is an important step in gene function regulation. Our data provides comprehensive data on regulatory exon combinations in response to deficiencies in 12 nutrients in Arabidopsis thaliana roots and suggest that varying patterns of exon combinations is involved in response to changing nutritional conditions.
This data inculdes 9,268 unannotated isoforms, in addition to the 41,671 reference transcripts in the TAIR10 database.
We estimated that the unannotated isoforms contain less than 1% of misassembled transcripts.
Raw RNA-seq data can be found at
DDBJ Sequence Read Archive (DRA005111 coming soon)
GTF file and read count for each isoform are attached to our paper.
>View with JBrowse
Windows IE9~, Safari 5.1~, Firefox 17.0~, Chrome
Mac OS X Safari 5.1~, Firefox 17.0~, Chrome
Nishida S, Kakei Y, Shimada Y and Fujiwara T. (2017) Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in
Contact : atpbsmd*yokohama-cu.ac.jp
-+-+- Version 1.12.1
( When you send E-mail please change * to @ )