marker gene list
| Dark 44min pls RedLigh 1min |
| IAA 3 h |
･･･up requlated genes
･･･down regulated genes| probeID | AGICode | Annotation | gene expression |
|
|---|---|---|---|---|
| 1 | 260819_at | AT1G06850 | ATBZIP52 (ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 52); DNA binding / transcription factor | -0.91 |
| 2 | 263207_at | AT1G10550 | XTH33 (xyloglucan:xyloglucosyl transferase 33); hydrolase, acting on glycosyl bonds | -0.95 |
| 3 | 262850_at | AT1G14920 | GAI (GA INSENSITIVE); transcription factor | -0.91 |
| 4 | 261663_at | AT1G18330 | EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor | 2.27 |
| 5 | 263151_at | AT1G54120 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45609.1) | -1.32 |
| 6 | 263738_at | AT1G60060 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40921.1); contains domain PTHR13902:SF3 (PTHR13902:SF3); contains domain PTHR13902 (PTHR13902) | -1.03 |
| 7 | 260167_at | AT1G71970 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22680.1); similar to unknown [Populus trichocarpa] (GB:ABK94498.1) | -1.06 |
| 8 | 266745_at | AT2G02950 | PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) | 2.31 |
| 9 | 263796_at | AT2G24540 | AFR (ATTENUATED FAR-RED RESPONSE) | 2.01 |
| 10 | 267516_at | AT2G30520 | RPT2 (ROOT PHOTOTROPISM 2); protein binding | 2.36 |
| 11 | 267517_at | AT2G30520 | RPT2 (ROOT PHOTOTROPISM 2); protein binding | 2.72 |
| 12 | 263252_at | AT2G31380 | STH (salt tolerance homologue); transcription factor/ zinc ion binding | 1.79 |
| 13 | 263963_at | AT2G36080 | DNA-binding protein, putative | 1.75 |
| 14 | 267364_at | AT2G40080 | ELF4 (EARLY FLOWERING 4) | 1.61 |
| 15 | 265245_at | AT2G43060 | transcription factor | -0.95 |
| 16 | 263779_at | AT2G46340 | SPA1 (SUPPRESSOR OF PHYA-105 1); signal transducer | 2.28 |
| 17 | 258497_at | AT3G02380 | COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding | 1.87 |
| 18 | 258609_at | AT3G02910 | Identical to UPF0131 protein At3g02910 [Arabidopsis Thaliana] (GB:Q9M8T3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46720.1); similar to Os03g0854000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051934.1); similar to unknown [Picea sitchensis] (GB:ABK22133.1); contains InterPro domain Butirosin biosynthesis, BtrG-like (InterPro:IPR013024); contains InterPro domain Protein of unknown function UPF0131 (InterPro:IPR005347) | 2.24 |
| 19 | 258742_at | AT3G05800 | transcription factor | 1.89 |
| 20 | 256266_at | AT3G12320 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75675.1) | 2.21 |
| 21 | 256245_at | AT3G12580 | HSP70 (heat shock protein 70); ATP binding | 1.76 |
| 22 | 257858_at | AT3G12920 | protein binding / zinc ion binding | -1.10 |
| 23 | 256999_at | AT3G14200 | DNAJ heat shock N-terminal domain-containing protein | 1.80 |
| 24 | 257262_at | AT3G21890 | zinc finger (B-box type) family protein | 2.32 |
| 25 | 258325_at | AT3G22830 | AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B); DNA binding / transcription factor | 2.30 |
| 26 | 258321_at | AT3G22840 | ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding | 2.10 |
| 27 | 258133_at | AT3G24500 | ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor | 1.88 |
| 28 | 256571_at | AT3G30730 | contains domain HELICASE-RELATED (PTHR10492) | -0.89 |
| 29 | 252429_at | AT3G47500 | CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor | 1.91 |
| 30 | 252118_at | AT3G51400 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23715.1); contains InterPro domain Protein of unknown function DUF241, plant (InterPro:IPR004320) | -0.88 |
| 31 | 251374_at | AT3G60390 | HAT3 (homeobox-leucine zipper protein 3); transcription factor | -1.06 |
| 32 | 255064_at | AT4G08950 | phosphate-responsive protein, putative (EXO) | -1.60 |
| 33 | 254685_at | AT4G13790 | auxin-responsive protein, putative | -1.71 |
| 34 | 245328_at | AT4G14465 | DNA-binding protein-related | -1.16 |
| 35 | 245439_at | AT4G16670 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39969.1); contains InterPro domain Pleckstrin-like, plant (InterPro:IPR013666); contains InterPro domain Protein of unknown function DUF828, plant (InterPro:IPR008546); contains InterPro domain Pleckstrin-like (InterPro:IPR001849) | -1.35 |
| 36 | 245276_at | AT4G16780 | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / transcription factor | -3.75 |
| 37 | 245362_at | AT4G17460 | HAT1 (homeobox-leucine zipper protein 1); DNA binding / transcription factor | -0.92 |
| 38 | 254356_at | AT4G22190 | similar to unknown [Populus trichocarpa] (GB:ABK94177.1) | -0.92 |
| 39 | 254066_at | AT4G25480 | DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription activator/ transcription factor | 2.18 |
| 40 | 253423_at | AT4G32280 | IAA29 (indoleacetic acid-induced protein 29); transcription factor | -1.75 |
| 41 | 253155_at | AT4G35720 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23717.1); contains InterPro domain Protein of unknown function DUF241, plant (InterPro:IPR004320) | -1.19 |
| 42 | 253104_at | AT4G36010 | pathogenesis-related thaumatin family protein | -1.59 |
| 43 | 253103_at | AT4G36110 | auxin-responsive protein, putative | -0.88 |
| 44 | 251072_at | AT5G01740 | similar to SAG20 (WOUND-INDUCED PROTEIN 12) [Arabidopsis thaliana] (TAIR:AT3G10985.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48816.1); contains InterPro domain Wound-induced protein, Wun1 (InterPro:IPR009798) | -1.03 |
| 45 | 251058_at | AT5G01790 | unknown protein | -1.24 |
| 46 | 251020_at | AT5G02270 | ATNAP9 (Non-intrinsic ABC protein 9) | 2.51 |
| 47 | 251012_at | AT5G02580 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55240.1); similar to hypothetical protein OsI_019565 [Oryza sativa (indica cultivar-group)] (GB:EAY98332.1); similar to Os05g0462000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055765.1); contains InterPro domain Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476) | -1.84 |
| 48 | 250665_at | AT5G06980 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12320.1) | 1.72 |
| 49 | 250420_at | AT5G11260 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor | 2.66 |
| 50 | 250012_x_at | AT5G18060 | auxin-responsive protein, putative | -1.26 |
| 51 | 249769_at | AT5G24120 | SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | 1.81 |
| 52 | 249741_at | AT5G24470 | APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator | 2.29 |
| 53 | 246966_at | AT5G24850 | CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding | 1.64 |
| 54 | 249383_at | AT5G39860 | PRE1 (PACLOBUTRAZOL RESISTANCE1); DNA binding / transcription factor | -0.99 |
| 55 | 249063_at | AT5G44110 | POP1 | 2.98 |
| 56 | 249035_at | AT5G44190 | GLK2 (GOLDEN2-LIKE 2); DNA binding / transcription factor | 1.89 |
| 57 | 249065_at | AT5G44260 | zinc finger (CCCH-type) family protein | -1.24 |
| 58 | 248347_at | AT5G52250 | transducin family protein / WD-40 repeat family protein | 1.59 |
| 59 | 248213_at | AT5G53660 | AtGRF7 (GROWTH-REGULATING FACTOR 7) | -1.13 |
| 60 | 248208_at | AT5G53980 | ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52); transcription factor | -1.41 |
| 61 | 247878_at | AT5G57760 | unknown protein | -1.39 |
| 62 | 247323_at | AT5G64170 | dentin sialophosphoprotein-related | 4.17 |