marker gene list
Dark 4 h pls RedLight 1min
Rosette leaf No12
・・・up requlated genes
・・・down regulated genes
probeID AGICode Annotation gene
expression
1 263114_at AT1G03130 PSAD-2 (photosystem I subunit D-2) 1.49
2 264839_at AT1G03630 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase 1.65
3 262632_at AT1G06680 PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2); poly(U) binding 1.23
4 261746_at AT1G08380 PSAO (photosystem I subunit O) 2.54
5 263676_at AT1G09340 CRB; binding / catalytic/ coenzyme binding 1.66
6 264524_at AT1G10070 ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic -0.81
7 262453_at AT1G11240 similar to hypothetical protein OsI_011255 [Oryza sativa (indica cultivar-group)] (GB:EAY90022.1); similar to Os03g0353500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050128.1); contains domain PTHR14577 (PTHR14577) -0.63
8 261197_at AT1G12900 GAPA-2; glyceraldehyde-3-phosphate dehydrogenase 1.40
9 260741_at AT1G15040 glutamine amidotransferase-related -0.78
10 262580_at AT1G15330 CBS domain-containing protein -0.69
11 259491_at AT1G15820 LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding 2.53
12 256114_at AT1G16850 unknown protein -1.07
13 262483_at AT1G17220 FUG1 (FU-GAERI1); translation initiation factor 1.20
14 255905_at AT1G17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN); water channel -1.00
15 256015_at AT1G19150 LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding 1.72
16 260664_at AT1G19510 myb family transcription factor -0.70
17 255886_at AT1G20340 DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier 1.91
18 260877_at AT1G21500 similar to hypothetical protein OsI_030994 [Oryza sativa (indica cultivar-group)] (GB:EAZ09762.1); similar to Os09g0517000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063677.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33829.1) 1.57
19 263032_at AT1G23850 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74577.1) -0.60
20 261272_at AT1G26665 similar to RNA polymerase II mediator complex protein-related [Arabidopsis thaliana] (TAIR:AT5G41910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62915.1); contains domain PTHR13345:SF2 (PTHR13345:SF2); contains domain PD331788 (PD331788); contains domain PTHR13345 (PTHR13345) -0.72
21 256309_at AT1G30380 PSAK (PHOTOSYSTEM I SUBUNIT K) 2.40
22 262557_at AT1G31330 PSAF (photosystem I subunit F) 1.67
23 262407_at AT1G34630 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51150.1); similar to Os03g0190900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049229.1); similar to hypothetical protein OsI_010090 [Oryza sativa (indica cultivar-group)] (GB:EAY88857.1); contains domain PTHR12459 (PTHR12459) -0.58
24 259625_at AT1G42970 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase 1.26
25 259460_at AT1G44000 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11911.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81476.1) 1.37
26 260506_at AT1G47210 CYCA3;2; cyclin-dependent protein kinase -0.60
27 260502_at AT1G47270 AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor -0.77
28 261603_at AT1G49600 ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA binding -0.75
29 259840_at AT1G52230 PSAH-2/PSAH2/PSI-H (PHOTOSYSTEM I SUBUNIT H-2) 2.60
30 262198_at AT1G53830 ATPME2 (Arabidopsis thaliana pectin methylesterase 2) -0.90
31 264545_at AT1G55670 PSAG 1.64
32 263738_at AT1G60060 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40921.1); contains domain PTHR13902:SF3 (PTHR13902:SF3); contains domain PTHR13902 (PTHR13902) -0.62
33 265033_at AT1G61520 LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding 1.42
34 262645_at AT1G62750 ATSCO1/ATSCO1/CPEF-G/SCO1 (SNOWY COTYLEDON1); translation elongation factor/ translation factor, nucleic acid binding 1.36
35 261957_at AT1G64660 ATMGL; catalytic/ methionine gamma-lyase -0.64
36 256359_at AT1G66460 protein kinase family protein -1.21
37 260460_at AT1G68230 reticulon family protein (RTNLB14) -0.60
38 260361_at AT1G69360 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65039.1); contains InterPro domain Protein of unknown function DUF863, plant (InterPro:IPR008581) -0.69
39 260181_at AT1G70710 AtGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1); hydrolase, hydrolyzing O-glycosyl compounds -0.96
40 259892_at AT1G72610 GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir 1.88
41 262373_at AT1G73120 similar to hypothetical protein [Vitis vinifera] (GB:CAN69175.1) -0.60
42 262168_at AT1G74730 similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96654.1); contains InterPro domain Protein of unknown function DUF1118 (InterPro:IPR009500) 1.73
43 262970_at AT1G75690 chaperone protein dnaJ-related 1.76
44 261751_at AT1G76080 ATCDSP32/CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD); thiol-disulfide exchange intermediate 1.42
45 261769_at AT1G76100 plastocyanin 1.38
46 246390_at AT1G77330 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative -1.21
47 262047_at AT1G80160 lactoylglutathione lyase family protein / glyoxalase I family protein -0.62
48 265374_at AT2G06520 PSBX (photosystem II subunit X) 1.52
49 265287_at AT2G20260 PSAE-2 (photosystem I subunit E-2); catalytic 1.22
50 264045_at AT2G22450 riboflavin biosynthesis protein, putative -0.87
51 265989_at AT2G24260 basic helix-loop-helix (bHLH) family protein -0.58
52 267517_at AT2G30520 RPT2 (ROOT PHOTOTROPISM 2); protein binding 1.42
53 267526_at AT2G30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) 1.46
54 256712_at AT2G34020 calcium ion binding -0.90
55 263841_at AT2G36870 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative 1.48
56 263844_at AT2G36930 zinc finger (C2H2 type) family protein -0.66
57 267080_at AT2G41190 amino acid transporter family protein -0.58
58 267635_at AT2G42220 rhodanese-like domain-containing protein 1.74
59 265245_at AT2G43060 transcription factor -0.94
60 260542_at AT2G43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1.57
61 266581_at AT2G46140 late embryogenesis abundant protein, putative / LEA protein, putative -0.70
62 263779_at AT2G46340 SPA1 (SUPPRESSOR OF PHYA-105 1); signal transducer 1.24
63 260527_at AT2G47270 transcription factor/ transcription regulator -0.75
64 245123_at AT2G47450 CAO (CHAOS); chromatin binding 1.20
65 258607_at AT3G02730 ATF1/TRXF1 (THIOREDOXIN F-TYPE 1); thiol-disulfide exchange intermediate 1.40
66 258589_at AT3G04290 ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase 1.58
67 259143_at AT3G10190 calmodulin, putative -0.58
68 256433_at AT3G10985 SAG20 (WOUND-INDUCED PROTEIN 12) -0.60
69 258777_at AT3G11850 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39886.1); contains InterPro domain Protein of unknown function DUF593 (InterPro:IPR007656) -0.62
70 256266_at AT3G12320 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75675.1) -1.33
71 257689_at AT3G12820 AtMYB10 (myb domain protein 10); DNA binding / transcription factor -0.75
72 256965_at AT3G13450 DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) -0.62
73 258395_at AT3G15500 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor -0.58
74 258285_at AT3G16140 PSAH-1 (photosystem I subunit H-1) 1.40
75 258055_at AT3G16250 ferredoxin-related 1.80
76 257932_at AT3G17040 HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding 2.01
77 257990_at AT3G19860 basic helix-loop-helix (bHLH) family protein -0.66
78 256979_at AT3G21055 PSBTN (photosystem II subunit T) 2.56
79 256970_at AT3G21090 ABC transporter family protein -1.01
80 257947_at AT3G21720 isocitrate lyase, putative -0.82
81 257171_at AT3G23760 similar to transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G14100.1); similar to unknown [Populus trichocarpa] (GB:ABK94230.1) -0.63
82 257197_at AT3G23800 selenium-binding family protein -0.65
83 257643_at AT3G25730 AP2 domain-containing transcription factor, putative -0.73
84 257311_at AT3G26570 PHT2;1 (phosphate transporter 2;1) 1.40
85 258239_at AT3G27690 LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding 1.83
86 256589_at AT3G28740 cytochrome P450 family protein -0.75
87 252441_at AT3G46780 PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE18); binding / catalytic 1.74
88 252463_at AT3G47070 similar to unknown [Populus trichocarpa] (GB:ABK95428.1) 1.21
89 252415_at AT3G47340 ASN1 (DARK INDUCIBLE 6) -0.87
90 252430_at AT3G47470 LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding 1.87
91 252130_at AT3G50820 PSBO-2/PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding 1.94
92 251977_at AT3G53250 auxin-responsive family protein 1.80
93 251814_at AT3G54890 LHCA1; chlorophyll binding 3.54
94 251519_at AT3G59400 GUN4 (Genomes uncoupled 4) 2.16
95 251373_at AT3G60530 zinc finger (GATA type) family protein -0.98
96 255572_at AT4G01050 hydroxyproline-rich glycoprotein family protein 1.20
97 255457_at AT4G02770 PSAD-1 (photosystem I subunit D-1) 2.07
98 255248_at AT4G05180 PSBQ/PSBQ-2/PSII-Q (PHOTOSYSTEM II SUBUNIT Q-2); calcium ion binding 2.27
99 255046_at AT4G09650 ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative 1.57
100 254970_at AT4G10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding 1.59
101 254790_at AT4G12800 PSAL (photosystem I subunit L) 1.81
102 245325_at AT4G14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7); hydrolase, acting on glycosyl bonds -0.82
103 245501_at AT4G15620 integral membrane family protein 1.35
104 245388_at AT4G16410 similar to hypothetical protein [Vitis vinifera] (GB:CAN73304.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39941.1); contains InterPro domain Protein of unknown function DUF751 (InterPro:IPR008470) 1.19
105 254623_at AT4G18480 CHLI1 (CHLORINA 42); magnesium chelatase 1.34
106 254398_at AT4G21280 PSBQ/PSBQ-1/PSBQA; calcium ion binding 1.68
107 254327_at AT4G22490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein -0.66
108 254102_at AT4G25050 ACP4 (ACYL CARRIER PROTEIN 4) 1.34
109 253790_at AT4G28660 PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) 1.60
110 253738_at AT4G28750 PSAE-1 (PSA E1 KNOCKOUT); catalytic 2.33
111 253522_at AT4G31290 ChaC-like family protein -1.10
112 253434_at AT4G32500 AKT5 (Arabidopsis K+ transporter 5); cyclic nucleotide binding / inward rectifier potassium channel -0.69
113 253387_at AT4G33010 ATGLDP1 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 1); glycine dehydrogenase (decarboxylating) 1.33
114 253041_at AT4G37870 PCK1/PEPCK (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1); ATP binding / phosphoenolpyruvate carboxykinase (ATP) -0.59
115 253009_at AT4G37930 SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding 1.61
116 252929_at AT4G38970 fructose-bisphosphate aldolase, putative 1.28
117 252911_at AT4G39510 CYP96A12 (cytochrome P450, family 96, subfamily A, polypeptide 12); oxygen binding 1.29
118 252906_at AT4G39640 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase -0.63
119 252855_at AT4G39660 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase -0.84
120 252872_at AT4G40010 SNRK2-7/SNRK2.7/SRK2F (SNF1-RELATED PROTEIN KINASE 2.7); kinase -0.93
121 251082_at AT5G01530 chlorophyll A-B binding protein CP29 (LHCB4) 1.19
122 251039_at AT5G02020 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55646.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15731.1) -0.98
123 250992_at AT5G02260 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) -0.98
124 251013_at AT5G02540 short-chain dehydrogenase/reductase (SDR) family protein -1.18
125 251010_at AT5G02550 unknown protein -0.68
126 251012_at AT5G02580 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55240.1); similar to hypothetical protein OsI_019565 [Oryza sativa (indica cultivar-group)] (GB:EAY98332.1); similar to Os05g0462000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055765.1); contains InterPro domain Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476) -1.26
127 250661_at AT5G07030 pepsin A -0.80
128 250441_at AT5G10540 peptidase M3 family protein / thimet oligopeptidase family protein -0.59
129 250243_at AT5G13630 GUN5 (GENOMES UNCOUPLED 5) 1.56
130 246596_at AT5G14740 CA2 (BETA CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding -0.80
131 246594_at AT5G14800 P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase -0.74
132 250006_at AT5G18660 DVR (PALE-GREEN AND CHLOROPHYLL B REDUCED 2); 3,8-divinyl protochlorophyllide a 8-vinyl reductase 1.92
133 246071_at AT5G20150 SPX (SYG1/Pho81/XPR1) domain-containing protein -0.64
134 246159_at AT5G20935 similar to unnamed protein product [Vitis vinifera] (GB:CAO67410.1) 2.28
135 246184_at AT5G20950 glycosyl hydrolase family 3 protein -0.67
136 249869_at AT5G23050 acyl-activating enzyme 17 (AAE17) -0.86
137 249876_at AT5G23060 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59780.1); similar to extracellular Ca2+ sensing receptor [Glycine max] (GB:ABY57763.1); contains InterPro domain Rhodanese-like (InterPro:IPR001763) 1.60
138 249824_at AT5G23380 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45300.1); contains InterPro domain Protein of unknown function DUF789 (InterPro:IPR008507) -0.84
139 249645_at AT5G36910 THI2.2 (THIONIN 2.2); toxin receptor binding 5.12
140 249606_at AT5G37260 CIR1/RVE2 (CIRCADIAN 1); DNA binding / transcription factor -0.83
141 248886_at AT5G46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT); antiporter/ triose-phosphate transmembrane transporter 1.28
142 248828_at AT5G47110 lil3 protein, putative -0.93
143 248793_at AT5G47240 ATNUDT8 (Arabidopsis thaliana Nudix hydrolase homolog 8); hydrolase -0.62
144 248684_at AT5G48485 DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipid binding 2.60
145 248683_at AT5G48490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 3.62
146 248435_at AT5G51210 OLEO3 (OLEOSIN3) -1.22
147 248151_at AT5G54270 LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3) 2.57
148 248160_at AT5G54470 zinc finger (B-box type) family protein -1.18
149 247878_at AT5G57760 unknown protein -0.79
150 247352_at AT5G63650 SNRK2-5/SNRK2.5/SRK2H (SNF1-RELATED PROTEIN KINASE 2.5); kinase -0.76
151 247356_at AT5G63800 BGAL6/MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase -0.61
152 247320_at AT5G64040 PSAN (photosystem I reaction center subunit PSI-N); calmodulin binding 1.52
153 247073_at AT5G66570 OE33/OEE1/OEE33/PSBO-1/PSBO1 (OXYGEN-EVOLVING ENHANCER 33); oxygen evolving/ poly(U) binding 1.39
154 247074_at AT5G66590 allergen V5/Tpx-1-related family protein -0.59