marker gene list
| Mutant gh3.5-1D |
| Mutant lwd1_lwd2 |
･･･up requlated genes
･･･down regulated genes| probeID | AGICode | Annotation | gene expression |
|
|---|---|---|---|---|
| 1 | 265042_at | AT1G04040 | acid phosphatase class B family protein | -3.26 |
| 2 | 263664_at | AT1G04250 | AXR3 (AUXIN RESISTANT 3); transcription factor | -2.21 |
| 3 | 260831_at | AT1G06830 | glutaredoxin family protein | -3.44 |
| 4 | 264517_at | AT1G10120 | DNA binding / transcription factor | 1.30 |
| 5 | 262784_at | AT1G10760 | SEX1 (STARCH EXCESS 1) | 1.55 |
| 6 | 259514_at | AT1G12480 | CDI3/OZS1/RCD3/SLAC1 (SLOW ANION CHANNEL-ASSOCIATED 1); transporter | 1.61 |
| 7 | 261203_at | AT1G12845 | similar to hypothetical protein MtrDRAFT_AC149131g9v2 [Medicago truncatula] (GB:ABD32556.1) | 1.33 |
| 8 | 259385_at | AT1G13470 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42040.1); contains InterPro domain Protein of unknown function DUF1262 (InterPro:IPR010683) | -1.88 |
| 9 | 261766_at | AT1G15580 | IAA5 (indoleacetic acid-induced protein 5); transcription factor | -4.13 |
| 10 | 259401_at | AT1G17760 | ATCSTF77/CSTF77 (Cleavage stimulation factor 77); protein binding | 1.09 |
| 11 | 261668_at | AT1G18500 | IPMS1/MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase | 1.17 |
| 12 | 261428_at | AT1G18870 | ICS2; isochorismate synthase | 1.49 |
| 13 | 255781_at | AT1G19880 | regulator of chromosome condensation (RCC1) family protein | 3.07 |
| 14 | 261221_at | AT1G19960 | similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1) | -2.38 |
| 15 | 259516_at | AT1G20450 | ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) | 1.44 |
| 16 | 264858_at | AT1G24190 | ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) | 1.15 |
| 17 | 245649_at | AT1G24706 | similar to putative THO complex 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD87730.1); similar to hypothetical protein OsI_004810 [Oryza sativa (indica cultivar-group)] (GB:EAY76963.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ69221.1); contains domain THO2 PROTEIN (PTHR21597) | 1.43 |
| 18 | 264987_at | AT1G27030 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05517.1); similar to Os10g0463800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064789.1) | 1.57 |
| 19 | 257506_at | AT1G29440 | auxin-responsive family protein | -3.41 |
| 20 | 259784_at | AT1G29450 | auxin-responsive protein, putative | -3.72 |
| 21 | 259787_at | AT1G29460 | auxin-responsive protein, putative | -2.85 |
| 22 | 259783_at | AT1G29510 | SAUR68 (SMALL AUXIN UPREGULATED 68) | -3.06 |
| 23 | 246603_at | AT1G31690 | copper ion binding | 1.39 |
| 24 | 261981_at | AT1G33811 | GDSL-motif lipase/hydrolase family protein | 1.17 |
| 25 | 260719_at | AT1G48090 | C2 domain-containing protein | 1.54 |
| 26 | 262464_at | AT1G50280 | phototropic-responsive NPH3 family protein | 1.20 |
| 27 | 259661_at | AT1G55265 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64354.1); contains InterPro domain Protein of unknown function DUF538 (InterPro:IPR007493) | -2.07 |
| 28 | 262098_at | AT1G56170 | HAP5B (Heme activator protein (yeast) homolog 5B); DNA binding / transcription factor | 1.31 |
| 29 | 256021_at | AT1G58270 | ZW9 | 2.30 |
| 30 | 262902_x_at | AT1G59930 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59920.1); similar to putative MADS-box transcription factor [Arabidopsis lyrata] (GB:AAO42467.1); contains domain PTHR11945 (PTHR11945); contains domain PTHR11945:SF14 (PTHR11945:SF14) | -2.39 |
| 31 | 264217_at | AT1G60190 | armadillo/beta-catenin repeat family protein / U-box domain-containing protein | 1.33 |
| 32 | 260629_at | AT1G62330 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22725.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) | 1.09 |
| 33 | 259766_at | AT1G64360 | unknown protein | -2.10 |
| 34 | 264636_at | AT1G65490 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65486.1) | -2.23 |
| 35 | 257516_at | AT1G69040 | ACR4 (ACT REPEAT 4); amino acid binding | 1.09 |
| 36 | 262312_at | AT1G70830 | MLP28 (MLP-LIKE PROTEIN 28) | -1.92 |
| 37 | 259756_at | AT1G71080 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38050.1); similar to unknown [Populus trichocarpa] (GB:ABK95382.1); contains domain PTHR15970:SF2 (PTHR15970:SF2); contains domain PTHR15970 (PTHR15970) | 1.13 |
| 38 | 260250_at | AT1G74260 | catalytic | 1.28 |
| 39 | 259925_at | AT1G75040 | PR5 (PATHOGENESIS-RELATED GENE 5) | -2.04 |
| 40 | 262947_at | AT1G75750 | GASA1 (GAST1 PROTEIN HOMOLOG 1) | -3.39 |
| 41 | 259971_at | AT1G76580 | transcription factor | 1.62 |
| 42 | 260058_at | AT1G78100 | F-box family protein | -1.81 |
| 43 | 261881_at | AT1G80760 | NIP6;1 (NOD26-like intrinsic protein 6;1); water channel | -1.78 |
| 44 | 263406_at | AT2G04160 | AIR3 (Auxin-Induced in Root cultures 3); subtilase | 1.81 |
| 45 | 266215_at | AT2G06850 | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE); hydrolase, acting on glycosyl bonds | -2.59 |
| 46 | 265837_at | AT2G14560 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48825.1); contains InterPro domain Protein of unknown function DUF567 (InterPro:IPR007612) | -3.09 |
| 47 | 264787_at | AT2G17840 | ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) | 1.47 |
| 48 | 263871_at | AT2G22010 | zinc finger (C3HC4-type RING finger) family protein | 1.24 |
| 49 | 263433_at | AT2G22240 | inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2 | 1.16 |
| 50 | 263586_at | AT2G25350 | phox (PX) domain-containing protein | 1.22 |
| 51 | 266805_at | AT2G30010 | similar to PMR5 (POWDERY MILDEW RESISTANT 5) [Arabidopsis thaliana] (TAIR:AT5G58600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21434.1); contains InterPro domain Protein of unknown function DUF231, plant (InterPro:IPR004253) | -1.80 |
| 52 | 267116_at | AT2G32560 | F-box family protein | -2.06 |
| 53 | 263912_at | AT2G36390 | SBE2.1 (STARCH BRANCHING ENZYME 2.1); 1,4-alpha-glucan branching enzyme | 1.17 |
| 54 | 265722_at | AT2G40100 | LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding | -2.59 |
| 55 | 266395_at | AT2G43100 | aconitase C-terminal domain-containing protein | -2.10 |
| 56 | 267501_at | AT2G45540 | WD-40 repeat family protein / beige-related | 1.41 |
| 57 | 259332_at | AT3G03830 | auxin-responsive protein, putative | -3.88 |
| 58 | 259331_at | AT3G03840 | auxin-responsive protein, putative | -3.31 |
| 59 | 258791_at | AT3G04720 | PR4 (PATHOGENESIS-RELATED 4) | -3.75 |
| 60 | 258844_at | AT3G04740 | SWP (STRUWWELPETER) | 1.13 |
| 61 | 258901_at | AT3G05640 | protein phosphatase 2C, putative / PP2C, putative | 1.10 |
| 62 | 259010_at | AT3G07340 | basic helix-loop-helix (bHLH) family protein | -1.81 |
| 63 | 256446_at | AT3G11110 | zinc finger (C3HC4-type RING finger) family protein | -1.87 |
| 64 | 258756_at | AT3G11960 | cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein | 1.09 |
| 65 | 256783_at | AT3G13670 | protein kinase family protein | 1.19 |
| 66 | 258349_at | AT3G17609 | HYH (HY5-HOMOLOG); DNA binding / transcription factor | -1.83 |
| 67 | 258159_at | AT3G17840 | RLK902 (receptor-like kinase 902); ATP binding / kinase/ protein serine/threonine kinase | 1.19 |
| 68 | 257122_at | AT3G20250 | APUM5 (ARABIDOPSIS PUMILIO 5); RNA binding | 1.17 |
| 69 | 256766_at | AT3G22231 | PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) | -3.21 |
| 70 | 256617_at | AT3G22240 | unknown protein | -3.30 |
| 71 | 257766_at | AT3G23030 | IAA2 (indoleacetic acid-induced protein 2); transcription factor | -2.53 |
| 72 | 257769_at | AT3G23050 | IAA7 (AUXIN RESISTANT 2); transcription factor | -2.45 |
| 73 | 257793_at | AT3G26960 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49052.1) | -2.55 |
| 74 | 257146_at | AT3G27260 | GTE8 (GLOBAL TRANSCRIPTION FACTOR GROUP E8); DNA binding | 1.27 |
| 75 | 256746_at | AT3G29320 | glucan phosphorylase, putative | 1.57 |
| 76 | 252612_at | AT3G45160 | contains domain PROKAR_LIPOPROTEIN (PS51257) | -3.58 |
| 77 | 252549_at | AT3G45860 | receptor-like protein kinase, putative | -1.79 |
| 78 | 252501_at | AT3G46880 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59080.1) | -1.88 |
| 79 | 252443_at | AT3G46960 | ATP-dependent helicase | 1.28 |
| 80 | 252415_at | AT3G47340 | ASN1 (DARK INDUCIBLE 6) | 2.37 |
| 81 | 252269_at | AT3G49580 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49570.1); similar to unknown protein [Brassica rapa subsp. pekinensis] (GB:AAQ92331.1) | -1.73 |
| 82 | 252220_at | AT3G49940 | LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) | -2.27 |
| 83 | 251640_at | AT3G57450 | similar to unnamed protein product [Vitis vinifera] (GB:CAO40798.1) | -1.93 |
| 84 | 251227_at | AT3G62700 | ATMRP10 (Arabidopsis thaliana multidrug resistance-associated protein 10) | 1.11 |
| 85 | 255694_at | AT4G00050 | UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor | -2.12 |
| 86 | 255625_at | AT4G01120 | GBF2 (G-BOX BINDING FACTOR 2); DNA binding / transcription factor | 1.10 |
| 87 | 255127_at | AT4G08300 | nodulin MtN21 family protein | -3.22 |
| 88 | 255128_at | AT4G08310 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44780.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61850.1) | 1.18 |
| 89 | 245397_at | AT4G14560 | IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); transcription factor | -2.91 |
| 90 | 245505_at | AT4G15690 | glutaredoxin family protein | -2.56 |
| 91 | 245362_at | AT4G17460 | HAT1 (homeobox-leucine zipper protein 1); DNA binding / transcription factor | -2.29 |
| 92 | 254621_at | AT4G18600 | WAVE5 (WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5) | 1.18 |
| 93 | 254643_at | AT4G18820 | ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding | 1.18 |
| 94 | 254595_at | AT4G18960 | AG (AGAMOUS); transcription factor | 1.18 |
| 95 | 254323_at | AT4G22620 | auxin-responsive family protein | -1.88 |
| 96 | 254041_at | AT4G25830 | integral membrane family protein | -1.90 |
| 97 | 253908_at | AT4G27260 | GH3.5/WES1; indole-3-acetic acid amido synthetase | 8.12 |
| 98 | 253871_at | AT4G27440 | PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase | 1.49 |
| 99 | 253815_at | AT4G28250 | ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) | 1.56 |
| 100 | 253754_at | AT4G29020 | glycine-rich protein | 1.68 |
| 101 | 253758_at | AT4G29060 | EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor | 1.43 |
| 102 | 253263_at | AT4G34000 | ABF3/DPBF5 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription activator/ transcription factor | 1.44 |
| 103 | 253255_at | AT4G34760 | auxin-responsive family protein | -2.69 |
| 104 | 246200_at | AT4G37240 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45438.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61825.1) | -2.93 |
| 105 | 253066_at | AT4G37770 | ACS8 (1-Amino-cyclopropane-1-carboxylate synthase 8) | 1.49 |
| 106 | 252970_at | AT4G38850 | SAUR_AC1 (SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA) | -3.16 |
| 107 | 252965_at | AT4G38860 | auxin-responsive protein, putative | -2.58 |
| 108 | 251013_at | AT5G02540 | short-chain dehydrogenase/reductase (SDR) family protein | 1.88 |
| 109 | 250971_at | AT5G02810 | PRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator | 1.25 |
| 110 | 250832_at | AT5G04950 | nicotianamine synthase, putative | -2.26 |
| 111 | 250764_at | AT5G05960 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | -3.47 |
| 112 | 250662_at | AT5G07010 | sulfotransferase family protein | 4.04 |
| 113 | 250520_at | AT5G08470 | PEX1 (PEROXISOME 1); ATPase | 1.58 |
| 114 | 245891_at | AT5G09220 | AAP2 (AMINO ACID PERMEASE 2); amino acid transmembrane transporter | -2.34 |
| 115 | 246522_at | AT5G15830 | ATBZIP3 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 3); DNA binding / transcription factor | -3.00 |
| 116 | 250012_x_at | AT5G18060 | auxin-responsive protein, putative | -2.58 |
| 117 | 246076_at | AT5G20280 | ATSPS1F (SUCROSE PHOSPHATE SYNTHASE 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups | 1.24 |
| 118 | 249894_at | AT5G22580 | Identical to Uncharacterized protein At5g22580 [Arabidopsis Thaliana] (GB:Q9FK81); similar to stable protein 1-related [Arabidopsis thaliana] (TAIR:AT3G17210.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68720.1); contains InterPro domain Dimeric alpha-beta barrel (InterPro:IPR011008); contains InterPro domain Stress responsive alpha-beta barrel (InterPro:IPR013097) | -3.00 |
| 119 | 246919_at | AT5G25460 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11420.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Protein of unknown function DUF642 (InterPro:IPR006946) | -1.90 |
| 120 | 246829_at | AT5G26570 | PWD (PHOSPHOGLUCAN WATER DIKINASE); catalytic | 1.40 |
| 121 | 249383_at | AT5G39860 | PRE1 (PACLOBUTRAZOL RESISTANCE1); DNA binding / transcription factor | -2.38 |
| 122 | 249354_at | AT5G40480 | EMB3012 (EMBRYO DEFECTIVE 3012) | 1.29 |
| 123 | 249073_at | AT5G44020 | acid phosphatase class B family protein | -1.80 |
| 124 | 249086_at | AT5G44180 | homeobox transcription factor, putative | 1.48 |
| 125 | 249046_at | AT5G44400 | FAD-binding domain-containing protein | 1.40 |
| 126 | 248945_at | AT5G45510 | leucine-rich repeat family protein | 1.43 |
| 127 | 248888_at | AT5G46240 | KAT1 (K+ ATPASE 1); cyclic nucleotide binding / inward rectifier potassium channel | 1.87 |
| 128 | 248801_at | AT5G47370 | HAT2; transcription factor | -2.62 |
| 129 | 248686_at | AT5G48540 | 33 kDa secretory protein-related | -1.97 |
| 130 | 248427_at | AT5G51750 | ATSBT1.3; subtilase | 1.49 |
| 131 | 248337_at | AT5G52310 | COR78 (COLD REGULATED 78) | 2.72 |
| 132 | 248327_at | AT5G52750 | heavy-metal-associated domain-containing protein | -2.16 |
| 133 | 248246_at | AT5G53200 | TRY (TRIPTYCHON); DNA binding / transcription factor | -1.87 |
| 134 | 248237_at | AT5G53890 | leucine-rich repeat transmembrane protein kinase, putative | 1.11 |
| 135 | 248190_at | AT5G54130 | calcium-binding EF hand family protein | -2.02 |
| 136 | 247800_at | AT5G58570 | unknown protein | -3.07 |
| 137 | 247723_at | AT5G59220 | protein phosphatase 2C, putative / PP2C, putative | 2.19 |
| 138 | 247500_at | AT5G61910 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68695.1); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Development and cell death (InterPro:IPR013989); contains InterPro domain Protein of unknown function GLTT (InterPro:IPR008165) | 1.49 |
| 139 | 247465_at | AT5G62190 | PRH75 (plant RNA helicase 75); ATP-dependent helicase | 1.46 |
| 140 | 247252_at | AT5G64770 | similar to 80C09_10 [Brassica rapa subsp. pekinensis] (GB:AAZ41821.1) | -3.42 |
| 141 | 247255_at | AT5G64780 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71731.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64859.1); contains InterPro domain Uncharacterised conserved protein UCP009193 (InterPro:IPR016549) | -2.97 |
| 142 | 247074_at | AT5G66590 | allergen V5/Tpx-1-related family protein | -1.92 |