marker gene list
Mutant nph4-1 (IAA)
IAA 3 h
･･･up requlated genes
･･･down regulated genes
probeID AGICode Annotation gene
expression
1 263653_at AT1G04310 ERS2 (ETHYLENE RESPONSE SENSOR 2); receptor -2.24
2 260957_at AT1G06080 ADS1 (DELTA 9 DESATURASE 1); oxidoreductase -2.42
3 261420_at AT1G07720 beta-ketoacyl-CoA synthase family protein 1.20
4 264652_at AT1G08920 sugar transporter, putative 1.17
5 262811_at AT1G11700 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17934.1); contains InterPro domain Protein of unknown function DUF584 (InterPro:IPR007608) 1.27
6 262793_at AT1G13110 CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7); oxygen binding 1.37
7 260741_at AT1G15040 glutamine amidotransferase-related -2.89
8 262598_at AT1G15260 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16070.1) 1.23
9 262603_at AT1G15380 lactoylglutathione lyase family protein / glyoxalase I family protein 1.29
10 261766_at AT1G15580 IAA5 (indoleacetic acid-induced protein 5); transcription factor -2.93
11 256012_at AT1G19250 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1); monooxygenase 2.46
12 261221_at AT1G19960 similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1) 2.16
13 261226_at AT1G20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN A11) -1.89
14 264729_at AT1G22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related -1.98
15 261651_at AT1G27760 interferon-related developmental regulator family protein / IFRD protein family -2.00
16 259789_at AT1G29395 COR414-TM1 (cold regulated 414 thylakoid membrane 1) 1.17
17 256190_at AT1G30100 NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) -4.19
18 265160_at AT1G31050 transcription factor 2.53
19 259546_at AT1G35350 similar to SHB1 (SHORT HYPOCOTYL UNDER BLUE1) [Arabidopsis thaliana] (TAIR:AT4G25350.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G26730.1); similar to ATP binding / ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68453.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68461.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73334.1); contains InterPro domain SPX, N-terminal (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) 1.16
20 261335_at AT1G44800 nodulin MtN21 family protein 1.79
21 259640_at AT1G52400 BGL1 (BETA-GLUCOSIDASE HOMOLOG 1); hydrolase, hydrolyzing O-glycosyl compounds 1.24
22 262643_at AT1G62770 invertase/pectin methylesterase inhibitor family protein -3.29
23 261956_at AT1G64590 short-chain dehydrogenase/reductase (SDR) family protein 1.20
24 245196_at AT1G67750 pectate lyase family protein -2.99
25 264341_at AT1G70270 unknown protein -2.00
26 259854_at AT1G72200 zinc finger (C3HC4-type RING finger) family protein 1.75
27 259680_at AT1G77690 amino acid permease, putative -1.93
28 264788_at AT2G17880 DNAJ heat shock protein, putative -3.28
29 265806_at AT2G18010 auxin-responsive family protein -3.00
30 266941_at AT2G18980 peroxidase, putative -2.31
31 265588_at AT2G19970 pathogenesis-related protein, putative -2.69
32 265586_at AT2G19990 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) -2.62
33 263452_at AT2G22190 trehalose-phosphatase 1.40
34 264052_at AT2G22330 CYP79B3 (cytochrome P450, family 79, subfamily B, polypeptide 3); oxygen binding 1.37
35 266830_at AT2G22810 ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4); 1-aminocyclopropane-1-carboxylate synthase -2.97
36 267250_at AT2G23060 GCN5-related N-acetyltransferase (GNAT) family protein -2.97
37 266578_at AT2G23910 cinnamoyl-CoA reductase-related 1.58
38 265277_at AT2G28410 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60650.1) 1.38
39 263436_at AT2G28690 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21721.1); contains InterPro domain Protein of unknown function DUF1635 (InterPro:IPR012862) -2.56
40 266222_at AT2G28780 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21693.1) 1.33
41 263890_at AT2G37030 auxin-responsive family protein -3.40
42 265954_at AT2G37260 TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor 1.60
43 265962_at AT2G37460 nodulin MtN21 family protein 1.33
44 266419_at AT2G38760 ANNAT3 (ANNEXIN ARABIDOPSIS 3); calcium ion binding / calcium-dependent phospholipid binding 1.28
45 266974_at AT2G39370 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41570.1) -2.03
46 267337_at AT2G39980 transferase family protein -3.22
47 267357_at AT2G40000 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41329.1); contains InterPro domain Hs1pro-1, C-terminal (InterPro:IPR009743); contains InterPro domain Hs1pro-1, N-terminal (InterPro:IPR009869) -2.04
48 255822_at AT2G40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) -2.85
49 266364_at AT2G41230 unknown protein -2.98
50 267101_at AT2G41480 peroxidase 1.17
51 265260_at AT2G43000 ANAC042 (Arabidopsis NAC domain containing protein 42); transcription factor 1.19
52 260608_at AT2G43870 polygalacturonase, putative / pectinase, putative -2.25
53 245140_at AT2G45420 LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) -2.93
54 266761_at AT2G47130 short-chain dehydrogenase/reductase (SDR) family protein -2.27
55 259264_at AT3G01260 aldose 1-epimerase family protein 1.83
56 258629_at AT3G02850 SKOR (stelar K+ outward rectifier); cyclic nucleotide binding / outward rectifier potassium channel 2.31
57 258851_at AT3G03190 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase 1.42
58 259331_at AT3G03840 auxin-responsive protein, putative -1.90
59 259018_at AT3G07390 AIR12 (Auxin-Induced in Root cultures 12); extracellular matrix structural constituent -2.68
60 259036_at AT3G09220 LAC7 (laccase 7); copper ion binding / oxidoreductase 1.73
61 258769_at AT3G10870 hydrolase, alpha/beta fold family protein -2.16
62 256252_at AT3G11340 UDP-glucoronosyl/UDP-glucosyl transferase family protein 1.33
63 256774_at AT3G13760 DC1 domain-containing protein 1.53
64 258437_at AT3G16560 protein phosphatase 2C-related / PP2C-related 1.45
65 258017_at AT3G19370 similar to transport protein-related [Arabidopsis thaliana] (TAIR:AT2G23360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47839.1); contains InterPro domain Protein of unknown function DUF869, plant (InterPro:IPR008587) 1.25
66 256626_at AT3G20015 pepsin A 1.36
67 257985_at AT3G20810 transcription factor jumonji (jmjC) domain-containing protein 1.39
68 258037_at AT3G21230 4CL5 (4-COUMARATE:COA LIGASE 5); 4-coumarate-CoA ligase 1.29
69 257264_at AT3G22060 receptor protein kinase-related -2.31
70 258322_at AT3G22740 HMT3 (Homocysteine S-methyltransferase 3); homocysteine S-methyltransferase 1.57
71 257927_at AT3G23240 ATERF1/ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor -2.66
72 256875_at AT3G26330 CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37); oxygen binding 1.22
73 256940_at AT3G30720 unknown protein 1.81
74 252534_at AT3G46130 MYB111 (myb domain protein 111); DNA binding / transcription factor 2.65
75 252269_at AT3G49580 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49570.1); similar to unknown protein [Brassica rapa subsp. pekinensis] (GB:AAQ92331.1) 1.50
76 252204_at AT3G50340 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G67020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09363.1) -2.25
77 251612_at AT3G57950 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42180.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83225.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23380.1) -2.08
78 251565_at AT3G58190 ASL16/LBD29 (LOB DOMAIN-CONTAINING PROTEIN 29) -3.39
79 251436_at AT3G59900 (ARGOS); unknown protein -2.86
80 251377_at AT3G60650 unknown protein -4.42
81 251293_at AT3G61930 unknown protein -2.09
82 255622_at AT4G01070 GT72B1; UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups 1.31
83 255575_at AT4G01430 nodulin MtN21 family protein 1.31
84 255578_at AT4G01450 nodulin MtN21 family protein 1.69
85 255437_at AT4G03060 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 1.59
86 245277_at AT4G15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups -2.73
87 245304_at AT4G15630 integral membrane family protein 1.47
88 245336_at AT4G16515 unknown protein -1.95
89 245416_at AT4G17350 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47440.1); similar to hypothetical protein 31.t00035 [Brassica oleracea] (GB:ABD65121.1); contains InterPro domain Pleckstrin-like, plant (InterPro:IPR013666); contains InterPro domain Protein of unknown function DUF828, plant (InterPro:IPR008546); contains InterPro domain Pleckstrin-like (InterPro:IPR001849) -2.48
90 254344_at AT4G22110 alcohol dehydrogenase, putative 1.83
91 253697_at AT4G29700 type I phosphodiesterase/nucleotide pyrophosphatase family protein 1.24
92 253660_at AT4G30140 GDSL-motif lipase/hydrolase family protein -2.72
93 253423_at AT4G32280 IAA29 (indoleacetic acid-induced protein 29); transcription factor -2.44
94 253207_at AT4G34770 auxin-responsive family protein -2.41
95 253227_at AT4G35030 protein kinase family protein 1.16
96 253155_at AT4G35720 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23717.1); contains InterPro domain Protein of unknown function DUF241, plant (InterPro:IPR004320) -2.57
97 253103_at AT4G36110 auxin-responsive protein, putative -2.12
98 246216_at AT4G36380 ROT3 (ROTUNDIFOLIA 3); oxygen binding / steroid hydroxylase 1.56
99 253044_at AT4G37290 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23270.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62855.1) -2.55
100 253047_at AT4G37295 unknown protein -2.59
101 253066_at AT4G37770 ACS8 (1-Amino-cyclopropane-1-carboxylate synthase 8) -2.68
102 252970_at AT4G38850 SAUR_AC1 (SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA) -2.01
103 251144_at AT5G01210 transferase family protein -2.16
104 251017_at AT5G02760 protein phosphatase 2C family protein / PP2C family protein -2.59
105 250944_at AT5G03380 heavy-metal-associated domain-containing protein 1.16
106 250741_at AT5G05790 myb family transcription factor 1.20
107 250709_at AT5G06080 LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33) -2.74
108 250509_at AT5G09970 CYP78A7 (cytochrome P450, family 78, subfamily A, polypeptide 7); oxygen binding -4.44
109 250438_at AT5G10580 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79714.1); contains InterPro domain Protein of unknown function DUF599 (InterPro:IPR006747) 1.31
110 250216_at AT5G14090 similar to hypothetical protein [Vitis vinifera] (GB:CAN72196.1) 1.22
111 246522_at AT5G15830 ATBZIP3 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 3); DNA binding / transcription factor 1.54
112 245971_at AT5G20730 NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription factor -2.56
113 249939_at AT5G22430 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27385.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68427.1) -2.60
114 249895_at AT5G22500 acyl CoA reductase, putative / male-sterility protein, putative -2.05
115 249848_at AT5G23220 NIC3 (NICOTINAMIDASE 3); catalytic/ nicotinamidase 1.41
116 249800_at AT5G23660 MTN3 (ARABIDOPSIS HOMOLOG OF MEDICAGO TRUNCATULA MTN3) 1.21
117 246932_at AT5G25190 ethylene-responsive element-binding protein, putative -2.52
118 246911_at AT5G25810 TNY (TINY); DNA binding / transcription factor 1.56
119 246844_at AT5G26660 ATMYB4 (myb domain protein 4); transcription repressor 1.78
120 246781_at AT5G27350 SFP1; carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter 1.22
121 249205_at AT5G42600 MRN (MARNERAL SYNTHASE); catalytic 2.24
122 249174_at AT5G42900 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75496.1) 2.10
123 249065_at AT5G44260 zinc finger (CCCH-type) family protein -3.24
124 248978_at AT5G45070 ATPP2-A8 (Phloem protein 2-A8); transmembrane receptor 2.78
125 248801_at AT5G47370 HAT2; transcription factor -2.01
126 248676_at AT5G48850 male sterility MS5 family protein 2.71
127 248548_at AT5G50300 xanthine/uracil/vitamin C permease family protein -1.93
128 248509_at AT5G50335 unknown protein -3.44
129 248395_at AT5G52120 ATPP2-A14 (Phloem protein 2-A14); carbohydrate binding 1.31
130 248208_at AT5G53980 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52); transcription factor -2.49
131 248118_at AT5G55050 GDSL-motif lipase/hydrolase family protein -2.49
132 247951_at AT5G57240 oxysterol-binding family protein -2.42
133 247867_at AT5G57630 CIPK21 (CBL-INTERACTING PROTEIN KINASE 21); kinase 1.25
134 247878_at AT5G57760 unknown protein -3.50
135 247634_at AT5G60520 late embryogenesis abundant protein-related / LEA protein-related 1.55
136 247577_at AT5G61290 flavin-containing monooxygenase family protein / FMO family protein 1.45
137 247549_at AT5G61420 MYB28 (MYB DOMAIN PROTEIN 28); DNA binding / transcription factor 2.00
138 247474_at AT5G62280 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49726.1); contains InterPro domain Protein of unknown function DUF1442 (InterPro:IPR009902) -2.28
139 247478_at AT5G62360 invertase/pectin methylesterase inhibitor family protein 2.83
140 247179_at AT5G65320 basic helix-loop-helix (bHLH) family protein -2.11
141 247109_at AT5G65870 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR); growth factor 1.38
142 247023_at AT5G67060 HEC1 (HECATE 1); transcription factor -3.10
143 244937_at ATCG01110 Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. 1.62