marker gene list
| Mutant arf19-1 (IAA) |
| IAA 3 h |
･･･up requlated genes
･･･down regulated genes| probeID | AGICode | Annotation | gene expression |
|
|---|---|---|---|---|
| 1 | 259445_at | AT1G02400 | ATGA2OX6/DTA1 (GIBBERELLIN 2-OXIDASE 6); gibberellin 2-beta-dioxygenase | -1.30 |
| 2 | 264652_at | AT1G08920 | sugar transporter, putative | 0.93 |
| 3 | 264516_at | AT1G10090 | similar to RXW8 [Arabidopsis thaliana] (TAIR:AT1G58520.1); similar to hypothetical protein OsI_012954 [Oryza sativa (indica cultivar-group)] (GB:EAY91721.1); similar to hypothetical protein OsJ_011922 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28439.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61522.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) | 0.60 |
| 4 | 264466_at | AT1G10380 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40998.1); contains domain PROKAR_LIPOPROTEIN (PS51257) | 0.60 |
| 5 | 263211_at | AT1G10460 | GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / metal ion binding / nutrient reservoir | -1.00 |
| 6 | 262452_at | AT1G11210 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11220.1); similar to cotton fiber expressed protein 1 [Gossypium hirsutum] (GB:AAC33276.1); contains InterPro domain Protein of unknown function DUF761, plant (InterPro:IPR008480) | 0.66 |
| 7 | 264347_at | AT1G12040 | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); protein binding / structural constituent of cell wall | 0.84 |
| 8 | 256010_at | AT1G19220 | ARF19 (AUXIN RESPONSE FACTOR 11); transcription factor | -4.87 |
| 9 | 260877_at | AT1G21500 | similar to hypothetical protein OsI_030994 [Oryza sativa (indica cultivar-group)] (GB:EAZ09762.1); similar to Os09g0517000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063677.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33829.1) | -0.87 |
| 10 | 262491_at | AT1G21650 | ATP binding | 0.53 |
| 11 | 261647_at | AT1G27740 | basic helix-loop-helix (bHLH) family protein | 1.09 |
| 12 | 261470_at | AT1G28370 | ATERF11/ERF11 (ERF domain protein 11); DNA binding / transcription factor/ transcription repressor | -1.53 |
| 13 | 265159_at | AT1G31060 | unknown protein | 1.06 |
| 14 | 259576_at | AT1G35330 | zinc finger (C3HC4-type RING finger) family protein | 0.64 |
| 15 | 262264_at | AT1G42470 | patched family protein | 0.76 |
| 16 | 262388_at | AT1G49320 | BURP domain-containing protein | 0.51 |
| 17 | 260614_at | AT1G53390 | ATPase, coupled to transmembrane movement of substances | -1.42 |
| 18 | 264186_at | AT1G54570 | esterase/lipase/thioesterase family protein | 0.76 |
| 19 | 260014_at | AT1G68010 | HPR (HYDROXYPYRUVATE REDUCTASE); glycerate dehydrogenase/ poly(U) binding | -0.92 |
| 20 | 260037_at | AT1G68840 | RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor | -0.83 |
| 21 | 259751_at | AT1G71030 | ATMYBL2 (Arabidopsis myb-like 2); DNA binding / transcription factor | -0.89 |
| 22 | 259801_at | AT1G72230 | plastocyanin-like domain-containing protein | 0.64 |
| 23 | 259927_at | AT1G75100 | JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding | -1.41 |
| 24 | 264102_at | AT1G79270 | ECT8 (evolutionarily conserved C-terminal region 8) | 0.54 |
| 25 | 261393_at | AT1G79580 | ANAC033; transcription factor | -0.84 |
| 26 | 262045_at | AT1G80240 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44183.1); contains InterPro domain Protein of unknown function DUF642 (InterPro:IPR006946) | -0.81 |
| 27 | 260287_at | AT1G80440 | kelch repeat-containing F-box family protein | -0.95 |
| 28 | 264618_at | AT2G17680 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22785.1); contains InterPro domain Protein of unknown function DUF241, plant (InterPro:IPR004320) | -1.47 |
| 29 | 264788_at | AT2G17880 | DNAJ heat shock protein, putative | -1.27 |
| 30 | 266019_at | AT2G18750 | calmodulin-binding protein | 0.55 |
| 31 | 263998_at | AT2G22510 | hydroxyproline-rich glycoprotein family protein | 0.72 |
| 32 | 267250_at | AT2G23060 | GCN5-related N-acetyltransferase (GNAT) family protein | -1.50 |
| 33 | 264404_at | AT2G25160 | CYP82F1 (cytochrome P450, family 82, subfamily F, polypeptide 1); oxygen binding | 1.64 |
| 34 | 266209_at | AT2G27550 | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS); phosphatidylethanolamine binding | 0.56 |
| 35 | 265680_at | AT2G32150 | haloacid dehalogenase-like hydrolase family protein | -0.82 |
| 36 | 255794_at | AT2G33480 | ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor | 0.65 |
| 37 | 267005_at | AT2G34460 | flavin reductase-related | -0.92 |
| 38 | 266908_at | AT2G34650 | PID (PINOID); kinase | -0.81 |
| 39 | 266637_at | AT2G35600 | BRXL1 (BREVIS RADIX like 1) | 0.72 |
| 40 | 263935_at | AT2G35930 | U-box domain-containing protein | -1.44 |
| 41 | 263912_at | AT2G36390 | SBE2.1 (STARCH BRANCHING ENZYME 2.1); 1,4-alpha-glucan branching enzyme | 0.63 |
| 42 | 265954_at | AT2G37260 | TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor | 1.49 |
| 43 | 266191_at | AT2G39040 | peroxidase, putative | 1.49 |
| 44 | 267357_at | AT2G40000 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41329.1); contains InterPro domain Hs1pro-1, C-terminal (InterPro:IPR009743); contains InterPro domain Hs1pro-1, N-terminal (InterPro:IPR009869) | -1.08 |
| 45 | 265722_at | AT2G40100 | LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding | -0.81 |
| 46 | 266368_at | AT2G41380 | embryo-abundant protein-related | -0.91 |
| 47 | 245113_at | AT2G41660 | MIZ1 (MIZU-KUSSEI 1) | 0.62 |
| 48 | 260492_at | AT2G41850 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase | -1.58 |
| 49 | 266765_at | AT2G46860 | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3); inorganic diphosphatase/ pyrophosphatase | 0.82 |
| 50 | 263320_at | AT2G47180 | ATGOLS1 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 1); transferase, transferring hexosyl groups | -0.92 |
| 51 | 245172_at | AT2G47540 | pollen Ole e 1 allergen and extensin family protein | 0.86 |
| 52 | 245151_at | AT2G47550 | pectinesterase family protein | -1.08 |
| 53 | 259275_at | AT3G01060 | similar to unnamed protein product [Vitis vinifera] (GB:CAO15045.1); similar to unknown [Brassica rapa] (GB:ABC41272.1) | -0.97 |
| 54 | 258497_at | AT3G02380 | COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding | -1.08 |
| 55 | 259171_at | AT3G03590 | SWIB complex BAF60b domain-containing protein | -0.91 |
| 56 | 258562_at | AT3G05980 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75979.1) | -0.98 |
| 57 | 259015_at | AT3G07350 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38687.1); contains InterPro domain Protein of unknown function DUF506, plant (InterPro:IPR006502) | -1.04 |
| 58 | 259244_at | AT3G07650 | COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding | 2.04 |
| 59 | 258919_at | AT3G10525 | similar to SIM (SIAMESE) [Arabidopsis thaliana] (TAIR:AT5G04470.1) | -0.80 |
| 60 | 256266_at | AT3G12320 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75675.1) | -0.94 |
| 61 | 256243_at | AT3G12500 | ATHCHIB (BASIC CHITINASE); chitinase | -1.09 |
| 62 | 258209_at | AT3G14060 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45609.1) | -0.85 |
| 63 | 259380_at | AT3G16340 | ATPDR1/PDR1 (PLEIOTROPIC DRUG RESISTANCE 1); ATPase, coupled to transmembrane movement of substances | 0.61 |
| 64 | 256799_at | AT3G18560 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68009.1) | -0.95 |
| 65 | 257743_at | AT3G27390 | Identical to Uncharacterized membrane protein At3g27390 [Arabidopsis Thaliana] (GB:Q8GUM4;GB:Q9LTZ1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14643.1) | 0.56 |
| 66 | 258239_at | AT3G27690 | LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding | -1.22 |
| 67 | 252786_at | AT3G42670 | CHR38 (chromatin remodeling 38); ATP binding / DNA binding / helicase | 0.54 |
| 68 | 252279_at | AT3G49700 | ETO3 (ETHYLENE OVERPRODUCING 3); 1-aminocyclopropane-1-carboxylate synthase | -1.45 |
| 69 | 252248_at | AT3G49750 | leucine-rich repeat family protein | 0.62 |
| 70 | 252133_at | AT3G50900 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66490.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45855.1) | -0.89 |
| 71 | 252103_at | AT3G51410 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23714.1); contains InterPro domain Protein of unknown function DUF241, plant (InterPro:IPR004320) | -0.99 |
| 72 | 251723_at | AT3G56230 | speckle-type POZ protein-related | 0.79 |
| 73 | 251727_at | AT3G56290 | similar to hypothetical protein [Vitis vinifera] (GB:CAN75527.1) | -0.98 |
| 74 | 251688_at | AT3G56480 | myosin heavy chain-related | 0.51 |
| 75 | 251376_at | AT3G60630 | scarecrow transcription factor family protein | -0.90 |
| 76 | 251368_at | AT3G61380 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45900.1); similar to {, related [Medicago truncatula] (GB:ABD32828.1); contains domain PTHR21726:SF4 (PTHR21726:SF4); contains domain PTHR21726 (PTHR21726) | 0.54 |
| 77 | 255331_at | AT4G04330 | similar to unnamed protein product [Vitis vinifera] (GB:CAO69665.1) | 0.68 |
| 78 | 255005_at | AT4G09990 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16316.1); contains InterPro domain Protein of unknown function DUF579, plant (InterPro:IPR006514) | 0.51 |
| 79 | 254809_at | AT4G12410 | auxin-responsive family protein | -1.23 |
| 80 | 245540_at | AT4G15230 | ATPDR2/PDR2 (PLEIOTROPIC DRUG RESISTANCE 2); ATPase, coupled to transmembrane movement of substances | 0.67 |
| 81 | 245416_at | AT4G17350 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47440.1); similar to hypothetical protein 31.t00035 [Brassica oleracea] (GB:ABD65121.1); contains InterPro domain Pleckstrin-like, plant (InterPro:IPR013666); contains InterPro domain Protein of unknown function DUF828, plant (InterPro:IPR008546); contains InterPro domain Pleckstrin-like (InterPro:IPR001849) | -1.53 |
| 82 | 254606_at | AT4G19030 | NLM1 (NOD26-like intrinsic protein 1;1); water channel | 1.02 |
| 83 | 254459_at | AT4G21200 | ATGA2OX8 (GIBBERELLIN 2-OXIDASE 8); gibberellin 2-beta-dioxygenase | -1.67 |
| 84 | 253910_at | AT4G27290 | S-locus protein kinase, putative | -0.82 |
| 85 | 253791_at | AT4G28640 | IAA11 (indoleacetic acid-induced protein 11); transcription factor | -1.10 |
| 86 | 253620_at | AT4G30520 | leucine-rich repeat family protein / protein kinase family protein | 0.52 |
| 87 | 253515_at | AT4G31320 | auxin-responsive protein, putative / small auxin up RNA (SAUR_C) | 1.26 |
| 88 | 253309_at | AT4G33790 | acyl CoA reductase, putative | 0.76 |
| 89 | 253197_at | AT4G35250 | vestitone reductase-related | -0.96 |
| 90 | 253125_at | AT4G36040 | DNAJ heat shock N-terminal domain-containing protein (J11) | -0.95 |
| 91 | 253047_at | AT4G37295 | unknown protein | -0.88 |
| 92 | 253064_at | AT4G37730 | ATBZIP7 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 7); DNA binding / transcription factor | 0.65 |
| 93 | 253070_at | AT4G37850 | basic helix-loop-helix (bHLH) family protein | 0.71 |
| 94 | 250987_at | AT5G02860 | pentatricopeptide (PPR) repeat-containing protein | 0.88 |
| 95 | 250802_at | AT5G04970 | pectinesterase, putative | -0.85 |
| 96 | 250498_at | AT5G09660 | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase | -0.95 |
| 97 | 249992_at | AT5G18560 | PUCHI; DNA binding / transcription factor | -1.31 |
| 98 | 245967_at | AT5G19800 | hydroxyproline-rich glycoprotein family protein | 0.99 |
| 99 | 249939_at | AT5G22430 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27385.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68427.1) | -1.33 |
| 100 | 249459_at | AT5G39580 | peroxidase, putative | -0.88 |
| 101 | 249436_at | AT5G39980 | pentatricopeptide (PPR) repeat-containing protein | 1.00 |
| 102 | 249202_at | AT5G42580 | CYP705A12 (cytochrome P450, family 705, subfamily A, polypeptide 12); oxygen binding | 1.20 |
| 103 | 249174_at | AT5G42900 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75496.1) | 1.51 |
| 104 | 248727_at | AT5G47990 | CYP705A5 (cytochrome P450, family 705, subfamily A, polypeptide 5); oxygen binding | 0.75 |
| 105 | 248728_at | AT5G48000 | CYP708A2 (cytochrome P450, family 708, subfamily A, polypeptide 2); oxygen binding | 0.94 |
| 106 | 248499_at | AT5G50400 | ATPAP27/PAP27 (purple acid phosphatase 27); acid phosphatase/ protein serine/threonine phosphatase | 0.52 |
| 107 | 247869_at | AT5G57520 | ZFP2 (ZINC FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding | -2.98 |
| 108 | 247867_at | AT5G57630 | CIPK21 (CBL-INTERACTING PROTEIN KINASE 21); kinase | 0.64 |
| 109 | 247668_at | AT5G60100 | APRR3 (PSEUDO-RESPONSE REGULATOR 3); transcription regulator | 0.81 |
| 110 | 247385_at | AT5G63420 | EMB2746 (EMBRYO DEFECTIVE 2746); catalytic | 1.06 |
| 111 | 247047_at | AT5G66650 | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22909.1); contains InterPro domain Protein of unknown function DUF607 (InterPro:IPR006769) | -1.29 |
| 112 | 244966_at | ATCG00600 | Cytochrome b6-f complex, subunit V. Disruption of homologous gene in Chlamydomonas results in disruption of cytochrome b6-f complex. | 1.75 |
| 113 | 244982_at | ATCG00780 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex | 1.04 |
| 114 | 244937_at | ATCG01110 | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. | 1.70 |