ATCG00740 : RNA polymerase subunit alpha
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode ATCG00740
Description RNA polymerase subunit alpha
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 ATCG00740 RNA polymerase subunit alpha RNA polymerase subunit alpha 1 0.3 -0.31
2 AT3G26350 LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel,
carpel, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3534
Blast hits to 2704 proteins in 342 species: Archae - 6;
Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162;
Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).		 0.83 0.31 -0.34
3 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A 0.82 0.33 -0.32
4 ATCG00750 ribosomal protein S11 ribosomal protein S11 0.81 0.29 -0.31
5 ATCG00770 ribosomal protein S8 ribosomal protein S8 0.81 0.31 -0.3
6 ATCG01040 Cytochrome C assembly protein YCF5 0.79 0.31 -0.31
7 ATCG01090 NADPH dehydrogenases NDHI 0.79 0.32 -0.32
8 ATCG00340 Photosystem I, PsaA/PsaB protein PSAB 0.79 0.32 -0.32
9 ATCG00760 ribosomal protein L36 ribosomal protein L36 0.79 0.3 -0.3
10 ATCG00800 structural constituent of ribosome 0.78 0.31 -0.29
11 ATCG01100 NADH dehydrogenase family protein NDHA 0.76 0.3 -0.31
12 AT5G20840 Phosphoinositide phosphatase family protein 0.76 0.31 -0.32
13 ATCG00530 CemA-like proton extrusion protein-related YCF10 0.76 0.31 -0.31
14 ATCG01050 NADH-Ubiquinone/plastoquinone (complex I) protein NDHD 0.76 0.34 -0.32
15 ATCG00120 ATP synthase subunit alpha ATP synthase subunit alpha 0.76 0.32 -0.32
16 ATCG00180 DNA-directed RNA polymerase family protein RPOC1 0.75 0.29 -0.32
17 AT3G14980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.75 0.33 -0.31
18 ATCG00070 photosystem II reaction center protein K precursor photosystem II reaction center
protein K precursor		 0.74 0.3 -0.32
19 AT2G37120 S1FA-like DNA-binding protein -0.74 0.31 -0.33
20 ATCG00480 ATP synthase subunit beta ATP synthase subunit beta, ATP
synthase subunit beta		 0.73 0.3 -0.31
21 ATCG00630 PSAJ PSAJ 0.73 0.3 -0.33
22 ATCG00050 ribosomal protein S16 ribosomal protein S16 0.72 0.3 -0.33
23 ATCG01120 chloroplast ribosomal protein S15 chloroplast ribosomal protein S15 0.72 0.3 -0.3
24 ATCG00780 ribosomal protein L14 ribosomal protein L14 0.72 0.32 -0.3
25 AT4G18820 AAA-type ATPase family protein 0.71 0.35 -0.28
26 AT2G31530 SecY protein transport family protein EMBRYO DEFECTIVE 2289, SECY
HOMOLOG 2		 0.71 0.31 -0.31
27 ATCG00820 ribosomal protein S19 ribosomal protein S19 0.71 0.31 -0.33
28 AT2G30150 UDP-Glycosyltransferase superfamily protein 0.71 0.32 -0.31
29 AT5G63400 adenylate kinase 1 adenylate kinase 1 -0.71 0.31 -0.3
30 AT1G54350 ABC transporter family protein ATP-binding cassette D2 0.71 0.31 -0.32
31 ATCG00510 photsystem I subunit I photsystem I subunit I 0.7 0.32 -0.32
32 AT1G50840 polymerase gamma 2 polymerase gamma 2, polymerase I A 0.69 0.31 -0.31
33 ATCG00040 maturase K maturase K 0.69 0.31 -0.31
34 ATCG00300 YCF9 YCF9 0.69 0.34 -0.31
35 ATCG00710 photosystem II reaction center protein H photosystem II reaction center
protein H		 0.68 0.31 -0.34
36 ATCG00160 ribosomal protein S2 ribosomal protein S2 0.68 0.32 -0.32
37 AT3G46440 UDP-XYL synthase 5 UDP-XYL synthase 5 -0.68 0.34 -0.33
38 ATCG00080 photosystem II reaction center protein I photosystem II reaction center
protein I		 0.68 0.32 -0.31
39 AT5G20360 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 Phox3 0.67 0.33 -0.3
40 ATCG01110 NAD(P)H dehydrogenase subunit H NAD(P)H dehydrogenase subunit H 0.67 0.3 -0.33
41 AT2G43800 Actin-binding FH2 (formin homology 2) family protein 0.67 0.28 -0.3
42 AT3G57470 Insulinase (Peptidase family M16) family protein 0.66 0.31 -0.3
43 AT1G24706 THO2 AtTHO2, EMBRYO DEFECTIVE 2793,
THO2		 0.66 0.29 -0.33
44 AT4G33210 F-box family protein SLOW MOTION 0.66 0.32 -0.31
45 AT2G34140 Dof-type zinc finger DNA-binding family protein -0.66 0.34 -0.3
46 AT1G73960 TBP-associated factor 2 TBP-associated factor 2 0.66 0.28 -0.33
47 AT5G54140 IAA-leucine-resistant (ILR1)-like 3 IAA-leucine-resistant (ILR1)-like
3		 -0.66 0.31 -0.31
48 AT5G18475 Pentatricopeptide repeat (PPR) superfamily protein 0.66 0.3 -0.3
49 AT3G61800 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2043 (InterPro:IPR018610), ENTH/VHS
(InterPro:IPR008942); Has 308 Blast hits to 279 proteins in
95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi
- 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91
(source: NCBI BLink).		 0.65 0.31 -0.3
50 AT4G14510 CRM family member 3B ATCFM3B, CRM family member 3B 0.65 0.29 -0.3
51 AT4G03205 Coproporphyrinogen III oxidase hemf2 0.65 0.31 -0.3
52 AT4G18130 phytochrome E phytochrome E 0.65 0.3 -0.32
53 AT1G28100 unknown protein; Has 64 Blast hits to 64 proteins in 27
species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6;
Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.65 0.32 -0.33
54 AT2G38700 mevalonate diphosphate decarboxylase 1 ATMVD1, mevalonate diphosphate
decarboxylase 1		 -0.65 0.3 -0.32
55 AT4G39680 SAP domain-containing protein 0.65 0.3 -0.3
56 AT1G53090 SPA1-related 4 SPA1-related 4 0.65 0.31 -0.31
57 ATCG00670 plastid-encoded CLP P CASEINOLYTIC PROTEASE P 1,
plastid-encoded CLP P		 0.65 0.31 -0.31
58 AT3G22360 alternative oxidase 1B alternative oxidase 1B -0.65 0.29 -0.3
59 AT3G19960 myosin 1 myosin 1 0.65 0.31 -0.33
60 AT4G02090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root; Has 132
Blast hits to 132 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.32 -0.31
61 ATCG00600 PETG PETG 0.64 0.31 -0.31
62 ATCG00790 ribosomal protein L16 ribosomal protein L16 0.64 0.3 -0.31
63 AT3G53610 RAB GTPase homolog 8 RAB GTPase homolog 8, AtRab8B,
AtRABE1a, RAB GTPase homolog 8		 -0.64 0.3 -0.32
64 AT4G17010 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.64 0.32 -0.33
65 AT5G16050 general regulatory factor 5 GF14 UPSILON, general regulatory
factor 5		 -0.64 0.35 -0.31
66 AT1G28570 SGNH hydrolase-type esterase superfamily protein 0.64 0.32 -0.32
67 AT2G23310 Rer1 family protein ATRER1C1 -0.64 0.31 -0.34
68 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein 0.64 0.33 -0.35
69 ATCG00520 unfolded protein binding YCF4 0.64 0.32 -0.31
70 AT1G76260 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 DWD (DDB1-binding WD40 protein)
hypersensitive to ABA 2		 -0.63 0.31 -0.29
71 AT2G43600 Chitinase family protein -0.63 0.3 -0.34
72 AT3G17420 glyoxysomal protein kinase 1 glyoxysomal protein kinase 1 -0.63 0.3 -0.31
73 AT1G05280 Protein of unknown function (DUF604) -0.63 0.32 -0.34
74 ATCG00280 photosystem II reaction center protein C photosystem II reaction center
protein C		 0.63 0.31 -0.32
75 AT2G23940 Protein of unknown function (DUF788) -0.63 0.3 -0.31
76 AT4G31320 SAUR-like auxin-responsive protein family -0.63 0.31 -0.32
77 AT4G02810 Protein of unknown function (DUF3049) FANTASTIC FOUR 1 -0.63 0.31 -0.31
78 AT3G19920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits
to 217 proteins in 16 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.33 -0.3
79 AT5G59800 methyl-CPG-binding domain 7 ARABIDOPSIS THALIANA
METHYL-CPG-BINDING DOMAIN 7,
methyl-CPG-binding domain 7		 0.63 0.32 -0.31
80 AT1G62920 CONTAINS InterPro DOMAIN/s: Proteasome maturation factor
UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana
protein match is: Proteasome maturation factor UMP1
(TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.31 -0.32
81 AT2G34020 Calcium-binding EF-hand family protein -0.63 0.31 -0.33
82 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 -0.62 0.32 -0.31
83 AT1G17860 Kunitz family trypsin and protease inhibitor protein -0.62 0.29 -0.33
84 AT2G43880 Pectin lyase-like superfamily protein -0.62 0.32 -0.33
85 ATCG00590 electron carriers ORF31 0.62 0.32 -0.33
86 AT3G04780 Protein of unknown function (DUF1000) -0.62 0.33 -0.33
87 AT3G51100 unknown protein; Has 48 Blast hits to 48 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.33 -0.32
88 AT5G66690 UDP-Glycosyltransferase superfamily protein UGT72E2 -0.62 0.32 -0.3
89 AT4G34040 RING/U-box superfamily protein 0.62 0.33 -0.3
90 AT5G26760 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.62 0.3 -0.3
91 AT2G45620 Nucleotidyltransferase family protein 0.62 0.3 -0.31
92 AT3G20710 F-box family protein -0.62 0.31 -0.31
93 AT1G14080 fucosyltransferase 6 ATFUT6, fucosyltransferase 6 -0.61 0.31 -0.31
94 AT3G48680 gamma carbonic anhydrase-like 2 AtCAL2, gamma carbonic
anhydrase-like 2		 -0.61 0.32 -0.32
95 AT1G71940 SNARE associated Golgi protein family -0.61 0.35 -0.3
96 AT4G14695 Uncharacterised protein family (UPF0041) -0.61 0.29 -0.29
97 AT3G12030 Protein of unknown function DUF106, transmembrane -0.61 0.31 -0.29
98 AT5G45510 Leucine-rich repeat (LRR) family protein -0.6 0.29 -0.32
99 AT2G35270 Predicted AT-hook DNA-binding family protein GIANT KILLER -0.6 0.29 -0.34
100 AT4G02980 endoplasmic reticulum auxin binding protein 1 ABP, endoplasmic reticulum auxin
binding protein 1		 -0.6 0.33 -0.3
101 AT5G07040 RING/U-box superfamily protein -0.59 0.32 -0.31
102 AT1G08990 plant glycogenin-like starch initiation protein 5 plant glycogenin-like starch
initiation protein 5		 -0.59 0.33 -0.31
103 AT5G44710 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33,
mitochondrial (InterPro:IPR013219); Has 101 Blast hits to
101 proteins in 55 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 -0.59 0.33 -0.33
104 AT4G22320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits
to 5363 proteins in 542 species: Archae - 33; Bacteria -
806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses -
151; Other Eukaryotes - 4399 (source: NCBI BLink).		 -0.59 0.32 -0.3
105 AT2G43040 tetratricopeptide repeat (TPR)-containing protein no pollen germination 1 -0.58 0.31 -0.32
106 AT1G73340 Cytochrome P450 superfamily protein -0.58 0.32 -0.31
107 AT3G54770 RNA-binding (RRM/RBD/RNP motifs) family protein -0.58 0.31 -0.32
108 AT3G56110 prenylated RAB acceptor 1.B1 prenylated RAB acceptor 1.B1 -0.58 0.31 -0.32
109 AT3G48370 transposable element gene -0.58 0.32 -0.34
110 AT5G52020 Integrase-type DNA-binding superfamily protein -0.58 0.31 -0.33
111 AT1G56680 Chitinase family protein -0.58 0.32 -0.31
112 AT3G14940 phosphoenolpyruvate carboxylase 3 phosphoenolpyruvate carboxylase 3,
phosphoenolpyruvate carboxylase 3		 -0.58 0.34 -0.31
113 AT1G70990 proline-rich family protein -0.58 0.31 -0.3
114 AT4G11610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.57 0.31 -0.31
115 AT3G09290 telomerase activator1 telomerase activator1 -0.57 0.33 -0.33
116 AT3G28380 P-glycoprotein 17 ATP-binding cassette B17,
P-glycoprotein 17		 -0.57 0.32 -0.3
117 AT3G05890 Low temperature and salt responsive protein family RARE-COLD-INDUCIBLE 2B -0.57 0.31 -0.34
118 AT1G54240 winged-helix DNA-binding transcription factor family
protein		 -0.57 0.33 -0.3
119 AT1G05530 UDP-glucosyl transferase 75B2 UDP-GLUCOSYL TRANSFERASE 2,
UDP-glucosyl transferase 75B2		 -0.57 0.28 -0.31
120 AT5G37055 HIT-type Zinc finger family protein ATSWC6, SERRATED LEAVES AND EARLY
FLOWERING		 -0.57 0.31 -0.31
121 AT3G04680 CLP-similar protein 3 CLP-similar protein 3 -0.56 0.32 -0.34
122 AT3G01190 Peroxidase superfamily protein -0.56 0.34 -0.31
123 AT5G10430 arabinogalactan protein 4 arabinogalactan protein 4, ATAGP4 -0.56 0.32 -0.3
124 AT3G21680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root, flower,
stamen; EXPRESSED DURING: 4 anthesis, petal differentiation
and expansion stage; Has 34 Blast hits to 34 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.32 -0.3
125 AT4G16790 hydroxyproline-rich glycoprotein family protein -0.56 0.32 -0.31
126 AT1G13190 RNA-binding (RRM/RBD/RNP motifs) family protein -0.56 0.32 -0.32
127 AT4G22250 RING/U-box superfamily protein -0.56 0.31 -0.32
128 AT3G54130 Josephin family protein -0.56 0.3 -0.32
129 AT5G45920 SGNH hydrolase-type esterase superfamily protein -0.56 0.33 -0.31
130 AT2G26290 root-specific kinase 1 root-specific kinase 1 -0.56 0.32 -0.31
131 AT1G29990 prefoldin 6 prefoldin 6 -0.55 0.32 -0.31
132 AT4G34840 Phosphorylase superfamily protein ARABIDOPSIS METHYLTHIOADENOSINE
NUCLEOSIDASE 2, ARABIDOPSIS
METHYLTHIOADENOSINE NUCLEOSIDASE
2, METHYLTHIOADENOSINE
NUCLEOSIDASE 2,
methylthioadenosine nucleosidase 2		 -0.55 0.31 -0.34
133 AT1G69810 WRKY DNA-binding protein 36 ATWRKY36, WRKY DNA-binding protein
36		 -0.55 0.29 -0.3
134 AT5G04470 cyclin-dependent protein kinase inhibitors SIAMESE -0.55 0.29 -0.3
135 AT3G32060 transposable element gene -0.55 0.32 -0.33
136 AT4G19185 nodulin MtN21 /EamA-like transporter family protein -0.55 0.32 -0.33
137 AT1G10990 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.33 -0.34
138 AT2G28460 Cysteine/Histidine-rich C1 domain family protein -0.55 0.31 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate -0.71 0.45 -0.43 C0136
140 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis 0.71 0.44 -0.5 C0193
141 C0019 1-O-β-Glucopyranosylsinapic acid 1-O-β-D-Glucopyranosylsinapic acid - phenylpropanoid pathwayl,
lignin biosynthesis 		0.65 0.44 -0.44