ATCG00380 : chloroplast ribosomal protein S4
Query Information
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AGICode ATCG00380
Description chloroplast ribosomal protein S4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 ATCG00380 chloroplast ribosomal protein S4 chloroplast ribosomal protein S4 1 0.31 -0.31
2 ATCG00790 ribosomal protein L16 ribosomal protein L16 0.9 0.31 -0.3
3 ATCG00520 unfolded protein binding YCF4 0.87 0.33 -0.31
4 ATCG00170 DNA-directed RNA polymerase family protein RPOC2 0.85 0.3 -0.34
5 ATCG00340 Photosystem I, PsaA/PsaB protein PSAB 0.85 0.31 -0.32
6 ATCG00510 photsystem I subunit I photsystem I subunit I 0.85 0.3 -0.32
7 ATCG00160 ribosomal protein S2 ribosomal protein S2 0.84 0.33 -0.31
8 ATCG01110 NAD(P)H dehydrogenase subunit H NAD(P)H dehydrogenase subunit H 0.83 0.33 -0.31
9 ATCG00500 acetyl-CoA carboxylase carboxyl transferase subunit beta acetyl-CoA carboxylase carboxyl
transferase subunit beta		 0.82 0.29 -0.32
10 ATCG01060 iron-sulfur cluster binding;electron carriers;4 iron, 4
sulfur cluster binding		 PSAC 0.8 0.32 -0.32
11 ATCG00130 ATPase, F0 complex, subunit B/B', bacterial/chloroplast ATPF 0.8 0.3 -0.31
12 ATCG00140 ATP synthase subunit C family protein ATPH 0.79 0.31 -0.31
13 ATCG01050 NADH-Ubiquinone/plastoquinone (complex I) protein NDHD 0.79 0.29 -0.33
14 ATCG00360 Tetratricopeptide repeat (TPR)-like superfamily protein YCF3 0.79 0.31 -0.33
15 ATCG00710 photosystem II reaction center protein H photosystem II reaction center
protein H		 0.79 0.33 -0.3
16 ATCG00420 NADH dehydrogenase subunit J NADH dehydrogenase subunit J 0.78 0.29 -0.32
17 ATCG01120 chloroplast ribosomal protein S15 chloroplast ribosomal protein S15 0.78 0.3 -0.33
18 ATCG00780 ribosomal protein L14 ribosomal protein L14 0.77 0.34 -0.32
19 ATCG01100 NADH dehydrogenase family protein NDHA 0.76 0.31 -0.33
20 ATCG00150 ATPase, F0 complex, subunit A protein ATPI 0.76 0.3 -0.33
21 ATCG01090 NADPH dehydrogenases NDHI 0.76 0.33 -0.31
22 ATCG00120 ATP synthase subunit alpha ATP synthase subunit alpha 0.76 0.32 -0.31
23 ATCG00430 photosystem II reaction center protein G photosystem II reaction center
protein G		 0.74 0.28 -0.34
24 ATCG00720 photosynthetic electron transfer B photosynthetic electron transfer B 0.74 0.28 -0.31
25 ATCG00590 electron carriers ORF31 0.73 0.32 -0.32
26 ATCG00660 ribosomal protein L20 ribosomal protein L20 0.73 0.32 -0.31
27 ATCG00690 photosystem II reaction center protein T photosystem II reaction center
protein T, PSBTC		 0.73 0.31 -0.3
28 ATCG00350 Photosystem I, PsaA/PsaB protein PSAA 0.72 0.32 -0.32
29 ATCG00470 ATP synthase epsilon chain ATP synthase epsilon chain 0.72 0.31 -0.3
30 ATCG01070 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDHE 0.72 0.29 -0.31
31 ATCG00670 plastid-encoded CLP P CASEINOLYTIC PROTEASE P 1,
plastid-encoded CLP P		 0.72 0.31 -0.32
32 ATCG00180 DNA-directed RNA polymerase family protein RPOC1 0.71 0.3 -0.32
33 AT5G62100 BCL-2-associated athanogene 2 BCL-2-associated athanogene 2,
BCL-2-associated athanogene 2		 0.71 0.31 -0.3
34 ATCG00530 CemA-like proton extrusion protein-related YCF10 0.71 0.31 -0.33
35 AT5G01500 thylakoid ATP/ADP carrier thylakoid ATP/ADP carrier -0.7 0.32 -0.33
36 ATCG00820 ribosomal protein S19 ribosomal protein S19 0.7 0.32 -0.32
37 ATCG00490 ribulose-bisphosphate carboxylases RBCL 0.69 0.32 -0.33
38 AT1G74030 enolase 1 enolase 1 -0.69 0.31 -0.3
39 AT5G18760 RING/U-box superfamily protein 0.69 0.31 -0.31
40 ATCG00065 ribosomal protein S12A RIBOSOMAL PROTEIN S12, ribosomal
protein S12A		 0.68 0.31 -0.32
41 AT2G38860 Class I glutamine amidotransferase-like superfamily protein YLS5 -0.68 0.3 -0.31
42 AT4G09150 T-complex protein 11 0.68 0.33 -0.3
43 ATCG00600 PETG PETG 0.67 0.32 -0.3
44 AT5G23830 MD-2-related lipid recognition domain-containing protein -0.67 0.33 -0.32
45 ATCG00270 photosystem II reaction center protein D photosystem II reaction center
protein D		 0.67 0.31 -0.32
46 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A 0.67 0.33 -0.32
47 ATCG00190 RNA polymerase subunit beta RNA polymerase subunit beta 0.67 0.32 -0.31
48 ATCG00680 photosystem II reaction center protein B photosystem II reaction center
protein B		 0.67 0.31 -0.3
49 AT5G36250 Protein phosphatase 2C family protein 0.66 0.31 -0.3
50 AT2G47070 squamosa promoter binding protein-like 1 squamosa promoter binding
protein-like 1		 0.66 0.3 -0.3
51 AT3G29780 ralf-like 27 ralf-like 27 -0.65 0.31 -0.31
52 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 -0.65 0.33 -0.31
53 AT4G13580 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.65 0.3 -0.31
54 AT5G66940 Dof-type zinc finger DNA-binding family protein 0.65 0.32 -0.29
55 AT3G11550 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 2		 -0.65 0.33 -0.31
56 AT1G01440 Protein of unknown function (DUF3133) 0.64 0.3 -0.34
57 AT5G02030 POX (plant homeobox) family protein BEL1-LIKE HOMEODOMAIN 9,
BELLRINGER, HB-6, LARSON,
PENNYWISE, REPLUMLESS, VAAMANA		 0.64 0.3 -0.3
58 AT3G09490 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.3 -0.33
59 ATCG00750 ribosomal protein S11 ribosomal protein S11 0.64 0.32 -0.3
60 AT5G14150 Protein of unknown function, DUF642 -0.64 0.3 -0.3
61 AT4G12550 Auxin-Induced in Root cultures 1 Auxin-Induced in Root cultures 1 -0.64 0.28 -0.32
62 AT3G62660 galacturonosyltransferase-like 7 galacturonosyltransferase-like 7 0.64 0.33 -0.3
63 AT1G12990 beta-1,4-N-acetylglucosaminyltransferase family protein 0.63 0.32 -0.33
64 AT5G13950 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits
to 145 proteins in 44 species: Archae - 0; Bacteria - 2;
Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.63 0.32 -0.33
65 AT2G35610 xyloglucanase 113 xyloglucanase 113 -0.63 0.29 -0.3
66 AT2G22930 UDP-Glycosyltransferase superfamily protein -0.63 0.31 -0.32
67 ATCG00440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
protein		 NDHC 0.63 0.31 -0.34
68 AT1G55970 histone acetyltransferase of the CBP family 4 HAC04, histone acetyltransferase
of the CBP family 4, HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 6, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 04, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 4		 0.63 0.31 -0.33
69 AT2G25810 tonoplast intrinsic protein 4;1 tonoplast intrinsic protein 4;1 -0.63 0.32 -0.31
70 AT3G02130 receptor-like protein kinase 2 clv3 peptide insensitive 1,
receptor-like protein kinase 2,
TOADSTOOL 2		 0.63 0.33 -0.31
71 AT5G26760 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.63 0.29 -0.34
72 AT5G53990 UDP-Glycosyltransferase superfamily protein -0.63 0.3 -0.31
73 AT5G43780 Pseudouridine synthase/archaeosine transglycosylase-like
family protein		 APS4 -0.62 0.32 -0.31
74 AT2G26020 plant defensin 1.2b plant defensin 1.2b -0.62 0.3 -0.34
75 AT2G03830 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 8 -0.62 0.31 -0.31
76 AT3G14980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.62 0.3 -0.31
77 AT1G80830 natural resistance-associated macrophage protein 1 ATNRAMP1, natural
resistance-associated macrophage
protein 1, PMIT1		 -0.62 0.31 -0.3
78 AT2G46850 Protein kinase superfamily protein -0.62 0.3 -0.31
79 AT1G12930 ARM repeat superfamily protein 0.62 0.32 -0.32
80 AT3G06300 P4H isoform 2 P4H isoform 2, prolyl
4-hydroxylase 2		 -0.62 0.32 -0.31
81 AT1G17970 RING/U-box superfamily protein 0.61 0.33 -0.34
82 AT3G05920 Heavy metal transport/detoxification superfamily protein -0.61 0.31 -0.3
83 AT5G44420 plant defensin 1.2 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
77, plant defensin 1.2, PLANT
DEFENSIN 1.2A		 -0.61 0.32 -0.31
84 AT5G36880 acetyl-CoA synthetase acetyl-CoA synthetase -0.61 0.33 -0.29
85 AT1G27070 5'-AMP-activated protein kinase-related 0.6 0.31 -0.31
86 AT2G28540 RNA binding (RRM/RBD/RNP motifs) family protein 0.6 0.3 -0.33
87 AT5G08460 GDSL-like Lipase/Acylhydrolase superfamily protein 0.6 0.32 -0.32
88 AT4G31970 cytochrome P450, family 82, subfamily C, polypeptide 2 cytochrome P450, family 82,
subfamily C, polypeptide 2		 -0.6 0.3 -0.34
89 AT2G01930 basic pentacysteine1 BASIC PENTACYSTEINE1, BBR, basic
pentacysteine1		 0.6 0.31 -0.33
90 AT2G34770 fatty acid hydroxylase 1 ARABIDOPSIS FATTY ACID HYDROXYLASE
1, fatty acid hydroxylase 1		 0.6 0.32 -0.34
91 AT2G43900 Endonuclease/exonuclease/phosphatase family protein 0.59 0.32 -0.33
92 AT3G20370 TRAF-like family protein -0.59 0.28 -0.32
93 AT5G02100 Oxysterol-binding family protein OSBP(OXYSTEROL BINDING
PROTEIN)-RELATED PROTEIN 3A,
UNFERTILIZED EMBRYO SAC 18		 -0.59 0.33 -0.31
94 AT4G33360 NAD(P)-binding Rossmann-fold superfamily protein farnesol dehydrogenase -0.59 0.32 -0.32
95 AT1G29680 Protein of unknown function (DUF1264) 0.59 0.3 -0.33
96 AT3G04720 pathogenesis-related 4 HEVEIN-LIKE, PR-4,
pathogenesis-related 4		 -0.58 0.34 -0.29
97 AT1G50560 cytochrome P450, family 705, subfamily A, polypeptide 25 cytochrome P450, family 705,
subfamily A, polypeptide 25		 -0.58 0.3 -0.32
98 AT2G36810 ARM repeat superfamily protein 0.58 0.3 -0.3
99 AT1G77130 plant glycogenin-like starch initiation protein 2 glucuronic acid substitution of
xylan 3, plant glycogenin-like
starch initiation protein 2		 -0.58 0.33 -0.33
100 AT1G11670 MATE efflux family protein -0.58 0.31 -0.3
101 AT1G66620 Protein with RING/U-box and TRAF-like domains -0.57 0.32 -0.33
102 AT5G48000 cytochrome P450, family 708, subfamily A, polypeptide 2 CYTOCHROME P450, FAMILY 708,
SUBFAMILY A, POLYPEPTIDE 2,
cytochrome P450, family 708,
subfamily A, polypeptide 2,
THALIANOL HYDROXYLASE, THALIANOL
HYDROXYLASE 1		 -0.56 0.3 -0.32
103 AT4G33100 CONTAINS InterPro DOMAIN/s: Mitochondrial
distribution/morphology family 35/apoptosis
(InterPro:IPR007918); Has 214 Blast hits to 214 proteins in
102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi
- 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink).		 -0.56 0.3 -0.33
104 AT5G14020 Endosomal targeting BRO1-like domain-containing protein -0.56 0.29 -0.32
105 AT1G67330 Protein of unknown function (DUF579) -0.55 0.31 -0.33
106 AT2G26290 root-specific kinase 1 root-specific kinase 1 -0.55 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
107 C0103 Glutaric acid - - - -0.72 0.46 -0.43
108 C0185 MST_3139.9 - - - -0.6 0.43 -0.44