AT5G12310 : -
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AGICode AT5G12310
Description RING/U-box superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G12310 RING/U-box superfamily protein 1 0.33 -0.32
2 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein
0.8 0.3 -0.33
3 AT1G31170 sulfiredoxin SULFIREDOXIN, sulfiredoxin 0.73 0.32 -0.32
4 AT4G14930 Survival protein SurE-like phosphatase/nucleotidase 0.73 0.31 -0.32
5 AT1G16480 Tetratricopeptide repeat (TPR)-like superfamily protein -0.73 0.29 -0.31
6 AT1G76810 eukaryotic translation initiation factor 2 (eIF-2) family
protein
-0.72 0.32 -0.31
7 AT4G20410 gamma-soluble NSF attachment protein GAMMA-SOLUBLE NSF ATTACHMENT
PROTEIN, gamma-soluble NSF
attachment protein
0.71 0.31 -0.33
8 AT5G24890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
0.71 0.31 -0.31
9 AT5G09740 histone acetyltransferase of the MYST family 2 histone acetyltransferase of the
MYST family 2
0.71 0.33 -0.35
10 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).
-0.7 0.33 -0.31
11 AT1G47330 CBS domain-containing protein with a domain of unknown
function (DUF21)
0.7 0.3 -0.34
12 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein
0.7 0.32 -0.31
13 AT3G49240 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1796 -0.7 0.32 -0.32
14 AT5G41340 ubiquitin conjugating enzyme 4 UBIQUITIN CONJUGATING ENZYME 4,
ubiquitin conjugating enzyme 4
0.7 0.31 -0.3
15 AT5G66130 RADIATION SENSITIVE 17 RADIATION SENSITIVE 17, RADIATION
SENSITIVE 17
-0.69 0.32 -0.32
16 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4
-0.69 0.3 -0.28
17 AT2G05810 ARM repeat superfamily protein -0.69 0.31 -0.32
18 AT3G24080 KRR1 family protein -0.69 0.31 -0.32
19 AT1G56280 drought-induced 19 drought-induced 19,
drought-induced 19
0.69 0.31 -0.3
20 AT1G01160 GRF1-interacting factor 2 GRF1-interacting factor 2 0.68 0.32 -0.32
21 AT2G42750 DNAJ heat shock N-terminal domain-containing protein 0.68 0.32 -0.3
22 AT1G30240 FUNCTIONS IN: binding; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold
(InterPro:IPR016024); Has 165 Blast hits to 164 proteins in
73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi -
68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).
-0.68 0.31 -0.31
23 AT5G47520 RAB GTPase homolog A5A RAB GTPase homolog A5A, RAB GTPase
homolog A5A
0.68 0.3 -0.29
24 AT2G04690 Pyridoxamine 5'-phosphate oxidase family protein 0.68 0.32 -0.35
25 AT5G06110 DnaJ domain ;Myb-like DNA-binding domain -0.68 0.3 -0.29
26 AT3G04730 indoleacetic acid-induced protein 16 indoleacetic acid-induced protein
16
0.68 0.32 -0.33
27 AT1G06630 F-box/RNI-like superfamily protein 0.67 0.34 -0.32
28 AT5G65900 DEA(D/H)-box RNA helicase family protein -0.67 0.32 -0.32
29 AT5G19700 MATE efflux family protein -0.67 0.3 -0.32
30 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2
-0.67 0.33 -0.3
31 AT5G54910 DEA(D/H)-box RNA helicase family protein -0.67 0.32 -0.31
32 AT2G18900 Transducin/WD40 repeat-like superfamily protein -0.67 0.35 -0.3
33 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein 0.67 0.32 -0.33
34 AT4G28200 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA
processing; LOCATED IN: intracellular; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT
helix (InterPro:IPR003107), U3 small nucleolar
RNA-associated protein 6 (InterPro:IPR013949); Has 492
Blast hits to 480 proteins in 206 species: Archae - 0;
Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60;
Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
-0.67 0.34 -0.3
35 AT2G31240 Tetratricopeptide repeat (TPR)-like superfamily protein -0.67 0.32 -0.3
36 AT5G13740 zinc induced facilitator 1 zinc induced facilitator 1 0.66 0.32 -0.32
37 AT5G42960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, plastid, chloroplast envelope;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).
0.66 0.31 -0.32
38 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B
0.66 0.31 -0.32
39 AT1G54850 HSP20-like chaperones superfamily protein 0.66 0.32 -0.31
40 AT1G33475 SNARE-like superfamily protein 0.66 0.3 -0.32
41 AT1G15400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast
hits to 82 proteins in 16 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).
0.66 0.33 -0.32
42 AT5G52950 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
-0.66 0.33 -0.32
43 AT1G14780 MAC/Perforin domain-containing protein -0.66 0.32 -0.31
44 AT4G04670 Met-10+ like family protein / kelch repeat-containing
protein
-0.66 0.33 -0.29
45 AT3G16810 pumilio 24 pumilio 24, pumilio 24 -0.66 0.33 -0.32
46 AT5G42560 Abscisic acid-responsive (TB2/DP1, HVA22) family protein 0.66 0.31 -0.29
47 AT3G15760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.66 0.32 -0.32
48 AT5G64240 metacaspase 3 metacaspase 3, metacaspase 1a,
metacaspase 3, metacaspase 1a
0.66 0.35 -0.33
49 AT1G17790 DNA-binding bromodomain-containing protein 0.66 0.32 -0.32
50 AT1G17410 Nucleoside diphosphate kinase family protein 0.65 0.29 -0.33
51 AT2G24050 MIF4G domain-containing protein / MA3 domain-containing
protein
eukaryotic translation Initiation
Factor isoform 4G2
-0.65 0.31 -0.29
52 AT3G11530 Vacuolar protein sorting 55 (VPS55) family protein 0.65 0.29 -0.33
53 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3
-0.65 0.29 -0.31
54 AT5G17270 Protein prenylyltransferase superfamily protein -0.65 0.31 -0.32
55 AT4G17486 PPPDE putative thiol peptidase family protein 0.65 0.29 -0.31
56 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)
-0.65 0.35 -0.34
57 AT1G16690 Enhancer of polycomb-like transcription factor protein -0.65 0.34 -0.32
58 AT1G31970 DEA(D/H)-box RNA helicase family protein STRESS RESPONSE SUPPRESSOR 1 -0.65 0.3 -0.3
59 AT4G11360 RING-H2 finger A1B RING-H2 finger A1B 0.65 0.3 -0.33
60 AT5G64420 DNA polymerase V family -0.65 0.33 -0.31
61 AT1G48040 Protein phosphatase 2C family protein -0.65 0.32 -0.32
62 AT2G47990 transducin family protein / WD-40 repeat family protein EMBRYO SAC DEVELOPMENT ARREST 13,
EMBRYO SAC DEVELOPMENT ARREST 19,
SLOW WALKER1
-0.65 0.28 -0.32
63 AT3G56980 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein
BHLH039, OBP3-RESPONSIVE GENE 3 0.65 0.32 -0.3
64 AT5G47400 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
-0.65 0.3 -0.33
65 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
0.64 0.3 -0.29
66 AT1G30290 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.31 -0.32
67 AT3G02340 RING/U-box superfamily protein 0.64 0.31 -0.31
68 AT5G26210 alfin-like 4 alfin-like 4 0.64 0.31 -0.3
69 AT5G01230 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
-0.64 0.32 -0.32
70 AT3G54860 Sec1/munc18-like (SM) proteins superfamily ATVPS33, VACUOLAR PROTEIN SORTING
33
0.64 0.33 -0.31
71 AT3G06530 ARM repeat superfamily protein -0.64 0.32 -0.31
72 AT3G09470 Major facilitator superfamily protein 0.64 0.33 -0.29
73 AT1G80180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G15400.3); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).
0.64 0.31 -0.33
74 AT2G34750 RNA polymerase I specific transcription initiation factor
RRN3 protein
-0.64 0.33 -0.31
75 AT1G20960 U5 small nuclear ribonucleoprotein helicase, putative embryo defective 1507 -0.64 0.33 -0.3
76 AT3G50210 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
0.64 0.32 -0.3
77 AT5G39500 GNOM-like 1 ENDOPLASMIC RETICULUM MORPHOLOGY
1, GNOM-like 1
-0.64 0.3 -0.33
78 AT2G06890 transposable element gene -0.64 0.32 -0.3
79 AT5G37930 Protein with RING/U-box and TRAF-like domains 0.64 0.32 -0.28
80 AT3G21350 RNA polymerase transcriptional regulation mediator-related MED6 0.63 0.32 -0.33
81 AT3G02700 NC domain-containing protein-related 0.63 0.32 -0.32
82 AT1G09250 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein
0.63 0.32 -0.31
83 AT5G05250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).
0.63 0.32 -0.31
84 AT5G46150 LEM3 (ligand-effect modulator 3) family protein / CDC50
family protein
0.63 0.32 -0.32
85 AT2G36840 ACT-like superfamily protein ACT domain repeats 10 0.63 0.3 -0.31
86 AT1G47400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits
to 11 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
0.63 0.33 -0.31
87 AT3G11730 Ras-related small GTP-binding family protein ATFP8, ARABIDOPSIS THALIANA RAB
GTPASE HOMOLOG D1, RAB GTPASE
HOMOLOG D1
0.63 0.3 -0.3
88 AT5G47420 Tryptophan RNA-binding attenuator protein-like 0.63 0.32 -0.32
89 AT3G55150 exocyst subunit exo70 family protein H1 exocyst subunit exo70 family
protein H1, exocyst subunit exo70
family protein H1
-0.63 0.31 -0.3
90 AT1G53910 related to AP2 12 related to AP2 12 -0.63 0.32 -0.34
91 AT1G55820 Kinase-related protein of unknown function (DUF1296) -0.63 0.32 -0.31
92 AT3G18295 Protein of unknown function (DUF1639) 0.63 0.33 -0.31
93 AT4G36780 BES1/BZR1 homolog 2 BES1/BZR1 homolog 2 0.62 0.32 -0.31
94 AT5G61440 atypical CYS HIS rich thioredoxin 5 atypical CYS HIS rich thioredoxin
5
0.62 0.33 -0.35
95 AT4G09460 myb domain protein 6 myb domain protein 6, myb domain
protein 6
0.62 0.3 -0.32
96 AT3G47530 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.31 -0.31
97 AT3G17770 Dihydroxyacetone kinase 0.62 0.3 -0.31
98 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.33 -0.33
99 AT1G73400 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.33 -0.33
100 AT2G22125 binding cellulose synthase-interactive
protein 1, POM-POM 2
-0.62 0.33 -0.35
101 AT1G61640 Protein kinase superfamily protein -0.62 0.33 -0.31
102 AT3G05250 RING/U-box superfamily protein 0.62 0.31 -0.33
103 AT1G60890 Phosphatidylinositol-4-phosphate 5-kinase family protein -0.62 0.32 -0.31
104 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.62 0.29 -0.3
105 AT1G48120 hydrolases;protein serine/threonine phosphatases -0.61 0.33 -0.32
106 AT2G39100 RING/U-box superfamily protein 0.61 0.33 -0.3
107 AT5G20200 nucleoporin-related -0.61 0.31 -0.31
108 AT2G35750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
-0.61 0.31 -0.31
109 AT3G57890 Tubulin binding cofactor C domain-containing protein -0.61 0.33 -0.32
110 AT2G13600 Pentatricopeptide repeat (PPR) superfamily protein -0.61 0.31 -0.3
111 AT1G43810 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
-0.61 0.29 -0.33
112 AT3G51670 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein
0.61 0.31 -0.31
113 AT1G06760 winged-helix DNA-binding transcription factor family
protein
0.61 0.32 -0.31
114 AT4G02710 Kinase interacting (KIP1-like) family protein -0.61 0.33 -0.32
115 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein -0.61 0.29 -0.33
116 AT2G17530 Protein kinase superfamily protein 0.6 0.31 -0.32
117 AT1G14850 nucleoporin 155 nucleoporin 155 -0.6 0.31 -0.32
118 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 -0.6 0.35 -0.32
119 AT4G14385 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Histone H4
acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).
0.6 0.33 -0.3
120 AT5G11730 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein
-0.6 0.29 -0.31
121 AT1G33390 RNA helicase family protein FASCIATED STEM 4, FASCIATED STEM 4 -0.6 0.3 -0.33
122 AT1G09620 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases
-0.6 0.33 -0.31
123 AT1G07980 nuclear factor Y, subunit C10 nuclear factor Y, subunit C10 0.6 0.33 -0.32
124 AT2G05120 Nucleoporin, Nup133/Nup155-like -0.6 0.33 -0.32
125 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.3 -0.32
126 AT2G39000 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.6 0.31 -0.32
127 AT2G18820 transposable element gene -0.59 0.33 -0.3
128 AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 -0.59 0.32 -0.32
129 AT2G36480 ENTH/VHS family protein -0.59 0.31 -0.3
130 AT3G05660 receptor like protein 33 receptor like protein 33, receptor
like protein 33
-0.59 0.32 -0.31
131 AT1G63670 Protein of unknown function (DUF3741) -0.59 0.32 -0.32
132 AT2G04030 Chaperone protein htpG family protein HEAT SHOCK PROTEIN 90.5, CR88,
EMBRYO DEFECTIVE 1956, HEAT SHOCK
PROTEIN 88.1, HEAT SHOCK PROTEIN
90.5
-0.59 0.32 -0.32
133 AT1G08410 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
-0.59 0.32 -0.32
134 AT3G50990 Peroxidase superfamily protein -0.59 0.32 -0.31
135 AT5G52120 phloem protein 2-A14 phloem protein 2-A14, phloem
protein 2-A14
0.58 0.32 -0.32
136 AT2G29390 sterol 4-alpha-methyl-oxidase 2-2 STEROL 4-ALPHA-METHYL-OXIDASE 2,
Arabidopsis thaliana sterol
4-alpha-methyl-oxidase 2-2, sterol
4-alpha-methyl-oxidase 2-2
0.58 0.3 -0.28
137 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
0.58 0.34 -0.28
138 AT2G18620 Terpenoid synthases superfamily protein 0.58 0.3 -0.32
139 AT1G48160 signal recognition particle 19 kDa protein, putative /
SRP19, putative
0.58 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
140 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II
0.75 0.45 -0.44 C0228