AT4G25550 : -

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AGICode	AT4G25550
Description	Cleavage/polyadenylation specificity factor, 25kDa subunit

Gene information

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	Gene Code	Description / Information	Gene name	Correlation				link
	Gene Code	Description / Information	Gene name	pcc	2.5%	97.5%	PPI	link
1	AT4G25550	Cleavage/polyadenylation specificity factor, 25kDa subunit		1	0.31	-0.33
2	AT4G10810	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		0.83	0.31	-0.29
3	AT3G51260	20S proteasome alpha subunit PAD1	20S proteasome alpha subunit PAD1	0.82	0.31	-0.32
4	AT4G31130	Protein of unknown function (DUF1218)		0.8	0.33	-0.3
5	AT4G34720	ATPase, F0/V0 complex, subunit C protein	ATVHA-C1, AVA-P1, VACUOLAR H+-PUMPING ATPASE C1	0.79	0.31	-0.31
6	AT5G20500	Glutaredoxin family protein		0.79	0.29	-0.33
7	AT5G11010	Pre-mRNA cleavage complex II protein family		0.78	0.33	-0.33
8	AT3G22110	20S proteasome alpha subunit C1	20S proteasome alpha subunit C1	0.78	0.33	-0.33
9	AT5G47030	ATPase, F1 complex, delta/epsilon subunit		0.77	0.33	-0.33
10	AT1G26630	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	EUKARYOTIC ELONGATION FACTOR 5A-2, EUKARYOTIC ELONGATION FACTOR 5A-2, FUMONISIN B1-RESISTANT12	0.77	0.32	-0.32
11	AT1G80500	SNARE-like superfamily protein		0.75	0.31	-0.31
12	AT4G31340	myosin heavy chain-related		0.75	0.31	-0.33
13	AT1G45688	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink).		0.75	0.31	-0.31
14	AT1G78300	general regulatory factor 2	14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, GF14 OMEGA, general regulatory factor 2	0.75	0.33	-0.3
15	AT5G28050	Cytidine/deoxycytidylate deaminase family protein		0.75	0.31	-0.33
16	AT1G47250	20S proteasome alpha subunit F2	20S proteasome alpha subunit F2	0.73	0.3	-0.33
17	AT1G70490	Ras-related small GTP-binding family protein	ARFA1D, ATARFA1D	0.73	0.31	-0.33
18	AT5G15490	UDP-glucose 6-dehydrogenase family protein	UDP-glucose dehydrogenase 3	0.73	0.32	-0.32
19	AT2G44610	Ras-related small GTP-binding family protein	ATRAB6A, ATRABH1B, RAB6, RAB6A	0.73	0.29	-0.3
20	AT2G47170	Ras-related small GTP-binding family protein	ARF1A1C	0.73	0.34	-0.31
21	AT1G24170	Nucleotide-diphospho-sugar transferases superfamily protein	GALACTURONOSYLTRANSFERASE-LIKE 8, LGT9	0.73	0.31	-0.32
22	AT5G27820	Ribosomal L18p/L5e family protein		0.72	0.31	-0.31
23	AT3G15060	RAB GTPase homolog A1G	RAB GTPase homolog A1G, RAB GTPase homolog A1G	0.72	0.3	-0.33
24	AT4G38630	regulatory particle non-ATPase 10	ATMCB1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, regulatory particle non-ATPase 10	0.72	0.3	-0.33
25	AT1G71900	Protein of unknown function (DUF803)		0.71	0.33	-0.31
26	AT1G75950	S phase kinase-associated protein 1	ARABIDOPSIS SKP1 HOMOLOGUE 1, ATSKP1, S phase kinase-associated protein 1, SKP1A, UFO INTERACTING PROTEIN 1	0.71	0.3	-0.33
27	AT1G27310	nuclear transport factor 2A	nuclear transport factor 2A	0.71	0.29	-0.32
28	AT3G01340	Transducin/WD40 repeat-like superfamily protein		0.71	0.34	-0.32
29	AT5G38480	general regulatory factor 3	general regulatory factor 3, RCI1	0.71	0.32	-0.3
30	AT1G77440	20S proteasome beta subunit C2	20S proteasome beta subunit C2	0.71	0.31	-0.29
31	AT5G05780	RP non-ATPase subunit 8A	ASYMMETRIC LEAVES ENHANCER 3, ATHMOV34, RP non-ATPase subunit 8A	0.71	0.3	-0.32
32	AT5G20570	RING-box 1	RING-BOX 1, HRT1, RING-box 1, REGULATOR OF CULLINS-1	0.71	0.32	-0.3
33	AT5G06660	Protein of unknown function DUF106, transmembrane		0.71	0.34	-0.3
34	AT5G07960	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).		0.71	0.32	-0.31
35	AT5G38470	Rad23 UV excision repair protein family	RADIATION SENSITIVE23D	0.71	0.32	-0.31
36	AT5G54750	Transport protein particle (TRAPP) component		0.71	0.3	-0.31
37	AT2G01410	NHL domain-containing protein		0.7	0.33	-0.29
38	AT5G51700	protein binding;zinc ion binding	ATRAR1, PPHB SUSCEPTIBLE 2, Required for Mla12 resistance 1, RPR2	0.7	0.3	-0.33
39	AT1G62820	Calcium-binding EF-hand family protein		0.7	0.32	-0.3
40	AT5G64850	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		0.69	0.31	-0.32
41	AT1G59830	protein phosphatase 2A-2	protein phosphatase 2A-2	0.69	0.33	-0.32
42	AT5G35430	Tetratricopeptide repeat (TPR)-like superfamily protein		0.69	0.29	-0.32
43	AT1G71730	unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		0.69	0.32	-0.32
44	AT5G59290	UDP-glucuronic acid decarboxylase 3	ATUXS3, UDP-glucuronic acid decarboxylase 3	0.69	0.3	-0.29
45	AT5G59910	Histone superfamily protein	HTB4	0.69	0.3	-0.3
46	AT3G04090	small and basic intrinsic protein 1A	SIP1;1, small and basic intrinsic protein 1A	0.69	0.31	-0.31
47	AT1G78260	RNA-binding (RRM/RBD/RNP motifs) family protein		0.68	0.33	-0.32
48	AT4G31720	TBP-associated factor II 15	SALT TOLERANCE DURING GERMINATION 1, TBP-ASSOCIATED FACTOR 10, TBP-associated factor II 15	0.68	0.32	-0.33
49	AT1G63170	Zinc finger, C3HC4 type (RING finger) family protein		0.68	0.3	-0.32
50	AT4G08280	Thioredoxin superfamily protein		0.68	0.29	-0.31
51	AT4G13520	small acidic protein 1	small acidic protein 1	0.68	0.33	-0.31
52	AT3G29010	Biotin/lipoate A/B protein ligase family		0.68	0.33	-0.33
53	AT1G30480	D111/G-patch domain-containing protein	DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111	0.68	0.33	-0.31
54	AT5G58240	FRAGILE HISTIDINE TRIAD	FRAGILE HISTIDINE TRIAD	0.67	0.33	-0.31
55	AT4G12060	Double Clp-N motif protein		0.67	0.32	-0.3
56	AT4G08420	transposable element gene		0.67	0.33	-0.31
57	AT3G22990	ARM repeat superfamily protein	LEAF AND FLOWER RELATED	0.67	0.31	-0.32
58	AT3G05530	regulatory particle triple-A ATPase 5A	ATS6A.2, regulatory particle triple-A ATPase 5A	0.67	0.33	-0.31
59	AT1G61780	postsynaptic protein-related		0.66	0.29	-0.3
60	AT4G36980	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink).		-0.66	0.31	-0.35
61	AT4G16510	YbaK/aminoacyl-tRNA synthetase-associated domain		0.66	0.33	-0.35
62	AT5G45090	phloem protein 2-A7	phloem protein 2-A7, phloem protein 2-A7	-0.64	0.31	-0.31
63	AT5G55950	Nucleotide/sugar transporter family protein		-0.63	0.31	-0.31
64	AT5G23570	XS domain-containing protein / XS zinc finger domain-containing protein-related	SUPPRESSOR OF GENE SILENCING 3, SUPPRESSOR OF GENE SILENCING 3	-0.63	0.31	-0.33
65	ATCG00080	photosystem II reaction center protein I	photosystem II reaction center protein I	-0.63	0.3	-0.31
66	AT3G54010	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	DEI1, PASTICCINO 1	-0.62	0.31	-0.32
67	AT3G42600	transposable element gene		-0.61	0.31	-0.3
68	AT1G37150	holocarboxylase synthetase 2	holocarboxylase synthetase 2	-0.61	0.35	-0.33
69	AT5G49440	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		-0.61	0.31	-0.33
70	AT1G34140	poly(A) binding protein 1	poly(A) binding protein 1	-0.61	0.31	-0.32
71	AT2G15080	receptor like protein 19	receptor like protein 19, receptor like protein 19	-0.6	0.32	-0.32
72	AT3G24790	Protein kinase superfamily protein		-0.6	0.32	-0.32
73	AT3G43100	transposable element gene		-0.59	0.31	-0.33
74	AT4G14530	BEST Arabidopsis thaliana protein match is: AGAMOUS-like 97 (TAIR:AT1G46408.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.59	0.32	-0.33
75	AT4G25800	Calmodulin-binding protein		-0.59	0.32	-0.33
76	AT1G06490	glucan synthase-like 7	Arabidopsis thaliana glucan synthase-like 7, atgsl7, callose synthase 7, gsl07, glucan synthase-like 7, glucan synthase-like 7	-0.59	0.33	-0.3
77	AT3G13065	STRUBBELIG-receptor family 4	STRUBBELIG-receptor family 4	-0.59	0.31	-0.3
78	AT3G12720	myb domain protein 67	myb domain protein 67, ATY53, MYB67, myb domain protein 67	-0.59	0.33	-0.3
79	ATMG00400	hypothetical protein	ORF157	-0.59	0.33	-0.33
80	AT1G69490	NAC-like, activated by AP3/PI	Arabidopsis NAC domain containing protein 29, NAC-LIKE, ACTIVATED BY AP3/PI, NAC-like, activated by AP3/PI	-0.59	0.31	-0.3
81	AT4G28040	nodulin MtN21 /EamA-like transporter family protein		-0.59	0.35	-0.32
82	AT5G07510	glycine-rich protein 14	ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 4, ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 14, GLYCINE-RICH PROTEIN 4, glycine-rich protein 14	-0.58	0.33	-0.31
83	AT4G18410	transposable element gene		-0.58	0.31	-0.31
84	AT5G51160	Ankyrin repeat family protein		-0.57	0.33	-0.33
85	AT2G13500	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 126 Blast hits to 126 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.56	0.33	-0.29
86	AT1G30010	Intron maturase, type II family protein		-0.56	0.34	-0.31
87	AT5G58510	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		-0.55	0.32	-0.32
88	AT2G03460	Galactose oxidase/kelch repeat superfamily protein		-0.55	0.31	-0.31
89	AT5G55010	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		-0.55	0.31	-0.32
90	AT5G19660	SITE-1 protease	SITE-1 PROTEASE, ATSBT6.1, SITE-1 protease	-0.55	0.28	-0.33

Metabolite information

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	CID	Metabolite name			Pathway Information	Correlation				link
	CID	Compound name	Stereochemistry	Aracyc name	Pathway Information	pcc	2.5%	97.5%	PPI	link
91	C0057	Anthranilic acid	-	Anthranilate	tryptophan biosynthesis, benzoylanthranilate biosynthesis	-0.79	0.41	-0.44
92	C0109	Guanine	-	Guanine	guanine and guanosine salvage II, guanosine nucleotides degradation II	-0.79	0.45	-0.44
93	C0030	3-Methylsulfinyl-n-propylglucosinolate	-	3-Methylsulfinylpropyl-glucosinolate	glucosinolate biosynthesis from homomethionine	-0.71	0.48	-0.46
94	C0132	Kaempferol-3-O-rutinoside	-	-	-	-0.66	0.45	-0.44
95	C0216	Proline	L-Proline	L-Proline	proline degradation II, arginine degradation VI (arginase 2 pathway), L-Ndelta-acetylornithine biosynthesis, tRNA charging, citrulline biosynthesis, proline biosynthesis III	-0.59	0.32	-0.32
96	C0006	β-Homothreonine	L-β-Homothreonine	-	-	-0.59	0.45	-0.45

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