AT4G25540 : ATMSH3
Query Information
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AGICode AT4G25540
Description homolog of DNA mismatch repair protein MSH3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G25540 homolog of DNA mismatch repair protein MSH3 ATMSH3, homolog of DNA mismatch
repair protein MSH3		 1 0.33 -0.32
2 AT3G31340 transposable element gene 0.76 0.3 -0.31
3 AT5G06140 sorting nexin 1 ARABIDOPSIS THALIANA SORTING NEXIN
1, sorting nexin 1		 -0.69 0.32 -0.31
4 AT3G20770 Ethylene insensitive 3 family protein AtEIN3, ETHYLENE-INSENSITIVE3 -0.67 0.32 -0.31
5 AT4G19470 Leucine-rich repeat (LRR) family protein 0.66 0.29 -0.31
6 AT2G44810 alpha/beta-Hydrolases superfamily protein DEFECTIVE ANTHER DEHISCENCE 1 0.64 0.31 -0.3
7 AT1G74055 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED
DURING: 6 growth stages; Has 24 Blast hits to 24 proteins
in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.64 0.32 -0.34
8 AT5G11570 Major facilitator superfamily protein 0.64 0.31 -0.32
9 AT1G73640 RAB GTPase homolog A6A RAB GTPase homolog A6A, RAB GTPase
homolog A6A		 0.64 0.32 -0.32
10 AT1G64410 transposable element gene 0.63 0.31 -0.3
11 AT2G46960 cytochrome P450, family 709, subfamily B, polypeptide 1 cytochrome P450, family 709,
subfamily B, polypeptide 1		 -0.63 0.31 -0.33
12 AT4G39790 Protein of unknown function (DUF630 and DUF632) 0.63 0.32 -0.31
13 AT3G61350 SKP1 interacting partner 4 SKP1 interacting partner 4 -0.63 0.33 -0.32
14 AT1G34220 Regulator of Vps4 activity in the MVB pathway protein -0.63 0.33 -0.32
15 AT3G47590 alpha/beta-Hydrolases superfamily protein -0.62 0.32 -0.32
16 AT1G64280 regulatory protein (NPR1) ARABIDOPSIS NONEXPRESSER OF PR
GENES 1, NON-INDUCIBLE IMMUNITY 1,
NONEXPRESSER OF PR GENES 1,
SALICYLIC ACID INSENSITIVE 1		 -0.61 0.31 -0.32
17 AT4G08600 transposable element gene -0.61 0.3 -0.31
18 AT3G51770 tetratricopeptide repeat (TPR)-containing protein ARABIDOPSIS ETHYLENE OVERPRODUCER
1, ETHYLENE OVERPRODUCER 1		 -0.61 0.3 -0.32
19 AT2G15830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G33960.1); Has 18 Blast hits to 18 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.31 -0.3
20 AT4G05610 transposable element gene 0.61 0.32 -0.29
21 AT1G72540 Protein kinase superfamily protein -0.6 0.32 -0.32
22 AT3G60570 expansin B5 expansin B5, ATHEXP BETA 1.3,
expansin B5		 0.59 0.31 -0.33
23 AT4G35420 dihydroflavonol 4-reductase-like1 dihydroflavonol 4-reductase-like1,
tetraketide alpha-pyrone reductase
1		 0.59 0.31 -0.32
24 AT1G33860 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.59 0.32 -0.3
25 AT1G60200 splicing factor PWI domain-containing protein / RNA
recognition motif (RRM)-containing protein		 0.59 0.32 -0.29
26 AT5G17150 Cystatin/monellin superfamily protein 0.59 0.31 -0.32
27 AT1G71980 Protease-associated (PA) RING/U-box zinc finger family
protein		 -0.58 0.3 -0.33
28 AT1G74580 Pentatricopeptide repeat (PPR) superfamily protein 0.58 0.29 -0.31
29 AT5G39640 Putative endonuclease or glycosyl hydrolase 0.58 0.32 -0.29
30 AT4G02660 Beige/BEACH domain ;WD domain, G-beta repeat protein 0.58 0.32 -0.32
31 AT5G20650 copper transporter 5 copper transporter 5 -0.58 0.3 -0.33
32 AT3G43660 Vacuolar iron transporter (VIT) family protein 0.58 0.31 -0.33
33 AT2G15360 BEST Arabidopsis thaliana protein match is:
fucosyltransferase 4 (TAIR:AT2G15390.2); Has 38 Blast hits
to 35 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.33 -0.31
34 AT1G09980 Putative serine esterase family protein -0.57 0.3 -0.31
35 AT1G35150 General transcription factor 2-related zinc finger protein -0.57 0.3 -0.31
36 AT3G06830 Plant invertase/pectin methylesterase inhibitor superfamily -0.57 0.27 -0.31
37 AT2G39750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.57 0.31 -0.31
38 AT3G16600 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.56 0.31 -0.3
39 AT5G23180 BEST Arabidopsis thaliana protein match is: DNA-binding
storekeeper protein-related transcriptional regulator
(TAIR:AT4G01260.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.56 0.31 -0.33
40 AT4G19910 Toll-Interleukin-Resistance (TIR) domain family protein 0.56 0.31 -0.33
41 AT3G08510 phospholipase C 2 phospholipase C 2, phospholipase C
2		 -0.56 0.31 -0.34
42 AT2G36590 proline transporter 3 PROLINE TRANSPORTER 3, proline
transporter 3		 -0.56 0.31 -0.29
43 AT5G59270 Concanavalin A-like lectin protein kinase family protein 0.56 0.34 -0.33
44 AT1G29570 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.55 0.3 -0.31
45 AT2G22290 RAB GTPase homolog H1D ARABIDOPSIS RAB GTPASE HOMOLOG
H1D, ARABIDOPSIS RAB GTPASE
HOMOLOG 6, RAB GTPase homolog H1D,
RAB GTPASE HOMOLOG H1D, RAB GTPase
homolog H1D		 -0.55 0.32 -0.32
46 AT2G35150 EXORDIUM like 1 EXORDIUM LIKE 7 0.55 0.34 -0.32
47 AT1G35890 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.55 0.3 -0.34
48 AT2G17430 Seven transmembrane MLO family protein ATMLO7, MILDEW RESISTANCE LOCUS O
7, NORTIA		 0.55 0.33 -0.33
49 AT1G77340 Pentatricopeptide repeat (PPR) superfamily protein -0.55 0.33 -0.34
50 AT5G59190 subtilase family protein 0.54 0.31 -0.33
51 AT3G54000 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.54 0.33 -0.3
52 AT1G12230 Aldolase superfamily protein -0.54 0.32 -0.31
53 AT5G55370 MBOAT (membrane bound O-acyl transferase) family protein 0.54 0.34 -0.34
54 AT5G12260 BEST Arabidopsis thaliana protein match is:
glycosyltransferase family protein 2 (TAIR:AT5G60700.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.54 0.31 -0.33
55 AT1G31360 RECQ helicase L2 ARABIDOPSIS THALIANA RECQ 2,
MED34, RECQ helicase L2		 0.54 0.3 -0.3
56 AT5G26680 5'-3' exonuclease family protein 0.54 0.31 -0.3
57 AT1G64480 calcineurin B-like protein 8 calcineurin B-like protein 8 0.54 0.34 -0.33
58 AT2G20625 Protein of unknown function (DUF626) 0.54 0.3 -0.33
59 AT5G14850 Alg9-like mannosyltransferase family -0.54 0.32 -0.3
60 AT3G14300 pectinesterase family protein A. THALIANA PECTIN METHYLESTERASE
26, ATPMEPCRC, PECTIN
METHYLESTERASE 26		 0.54 0.34 -0.3
61 AT2G18780 F-box and associated interaction domains-containing protein 0.53 0.33 -0.29
62 AT1G66480 plastid movement impaired 2 0.53 0.32 -0.32
63 AT1G35610 Cysteine/Histidine-rich C1 domain family protein 0.53 0.35 -0.29
64 AT1G21870 golgi nucleotide sugar transporter 5 golgi nucleotide sugar transporter
5		 -0.53 0.3 -0.33
65 AT2G07190 Domain of unknown function (DUF1985) -0.52 0.3 -0.31
66 AT5G60740 ABC transporter family protein ATP-binding cassette G28 -0.52 0.3 -0.34
67 AT5G60310 Concanavalin A-like lectin protein kinase family protein 0.52 0.34 -0.29
68 AT2G35480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G32260.1); Has 47 Blast
hits to 47 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.31 -0.31
69 AT3G43330 transposable element gene -0.52 0.31 -0.3
70 AT4G02160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G61710.1); Has 35 Blast hits
to 35 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.52 0.34 -0.31
71 AT1G48800 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.52 0.31 -0.31
72 AT1G14480 Ankyrin repeat family protein 0.52 0.34 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
73 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.68 0.45 -0.43
74 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.6 0.44 -0.44 C0073
75 C0196 Phosphatidylcholine-34:3 - Phosphatidylcholine-34:3 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		-0.59 0.46 -0.45 C0196