AT4G15850 : RNA helicase 1
Query Information
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AGICode AT4G15850
Description RNA helicase 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G15850 RNA helicase 1 RNA helicase 1, RNA helicase 1 1 0.31 -0.31
2 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.83 0.32 -0.32
3 AT3G51830 SAC domain-containing protein 8 ATG5, SAC domain-containing
protein 8		 -0.82 0.32 -0.3
4 AT1G61770 Chaperone DnaJ-domain superfamily protein 0.82 0.31 -0.3
5 AT3G19130 RNA-binding protein 47B RNA-binding protein 47B,
RNA-binding protein 47B		 0.82 0.31 -0.33
6 AT1G73180 Eukaryotic translation initiation factor eIF2A family
protein		 0.81 0.33 -0.29
7 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.81 0.32 -0.34
8 AT1G14830 DYNAMIN-like 1C DYNAMIN-like 1C, ARABIDOPSIS
DYNAMIN-LIKE PROTEIN 5,
DYNAMIN-like 1C, DYNAMIN RELATED
PROTEIN 1C		 0.81 0.32 -0.32
9 AT3G02190 Ribosomal protein L39 family protein 0.81 0.3 -0.31
10 AT2G23930 probable small nuclear ribonucleoprotein G probable small nuclear
ribonucleoprotein G		 0.81 0.31 -0.32
11 AT1G75670 DNA-directed RNA polymerases 0.8 0.3 -0.34
12 AT3G49100 Signal recognition particle, SRP9/SRP14 subunit 0.8 0.32 -0.31
13 AT3G19620 Glycosyl hydrolase family protein -0.8 0.31 -0.3
14 AT1G14060 GCK domain-containing protein 0.8 0.3 -0.31
15 AT3G04710 ankyrin repeat family protein tetratricopeptide repeat 10 0.8 0.33 -0.3
16 AT5G43970 translocase of outer membrane 22-V ATTOM22-V, translocase of outer
membrane 22-V, TRANSLOCASE OUTER
MITOCHONDRIAL MEMBRANE 22-V		 0.8 0.3 -0.32
17 AT5G23900 Ribosomal protein L13e family protein 0.8 0.32 -0.32
18 AT1G64090 Reticulan like protein B3 Reticulan like protein B3 0.79 0.33 -0.29
19 AT3G27280 prohibitin 4 prohibitin 4, prohibitin 4 0.79 0.31 -0.34
20 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.79 0.3 -0.33
21 AT3G46560 Tim10/DDP family zinc finger protein embryo defective 2474, TIM9 0.79 0.33 -0.32
22 AT3G10090 Nucleic acid-binding, OB-fold-like protein 0.79 0.35 -0.31
23 AT2G29530 Tim10/DDP family zinc finger protein TIM10 0.78 0.32 -0.31
24 AT2G20940 Protein of unknown function (DUF1279) 0.78 0.31 -0.32
25 AT3G55605 Mitochondrial glycoprotein family protein 0.78 0.3 -0.32
26 AT4G26780 Co-chaperone GrpE family protein AR192, mitochondrial GrpE 2 0.78 0.29 -0.34
27 AT3G03600 ribosomal protein S2 ribosomal protein S2 0.78 0.3 -0.32
28 AT4G15640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.78 0.32 -0.32
29 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 0.77 0.3 -0.31
30 AT1G30580 GTP binding 0.77 0.32 -0.31
31 AT3G49320 Metal-dependent protein hydrolase 0.77 0.31 -0.33
32 AT1G53645 hydroxyproline-rich glycoprotein family protein 0.77 0.31 -0.31
33 AT1G31020 thioredoxin O2 thioredoxin O2, thioredoxin O2 0.77 0.32 -0.33
34 AT1G70350 unknown protein; Has 98 Blast hits to 98 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.77 0.33 -0.31
35 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.77 0.32 -0.3
36 AT1G26740 Ribosomal L32p protein family 0.77 0.32 -0.32
37 AT1G63240 unknown protein; Has 460 Blast hits to 413 proteins in 106
species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi -
46; Plants - 43; Viruses - 2; Other Eukaryotes - 200
(source: NCBI BLink).		 -0.76 0.33 -0.33
38 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.76 0.32 -0.33
39 AT2G40330 PYR1-like 6 PYR1-like 6, regulatory components
of ABA receptor 9		 0.76 0.31 -0.31
40 AT3G23990 heat shock protein 60 heat shock protein 60, HEAT SHOCK
PROTEIN 60-3B		 0.76 0.29 -0.33
41 AT3G01790 Ribosomal protein L13 family protein 0.76 0.32 -0.33
42 AT3G25120 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.75 0.31 -0.3
43 AT3G14600 Ribosomal protein L18ae/LX family protein 0.75 0.31 -0.32
44 AT5G17520 root cap 1 (RCP1) MALTOSE EXCESS 1, ROOT CAP 1 -0.75 0.3 -0.34
45 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.75 0.3 -0.32
46 AT5G44110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette A21,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN, ATPOP1, POP1		 0.75 0.33 -0.3
47 AT2G33210 heat shock protein 60-2 heat shock protein 60-2 0.75 0.3 -0.33
48 AT1G61740 Sulfite exporter TauE/SafE family protein 0.75 0.31 -0.31
49 AT3G01800 Ribosome recycling factor 0.75 0.29 -0.32
50 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.75 0.3 -0.33
51 AT5G45310 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: stem, inflorescence meristem, root, leaf; EXPRESSED
DURING: LP.04 four leaves visible; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.75 0.31 -0.31
52 AT1G51140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.75 0.32 -0.31
53 AT5G40530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.75 0.34 -0.32
54 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 0.75 0.32 -0.29
55 AT2G19385 zinc ion binding 0.75 0.32 -0.33
56 AT2G47420 Ribosomal RNA adenine dimethylase family protein adenosine dimethyl transferase 1A 0.75 0.33 -0.32
57 AT1G64220 translocase of outer membrane 7 kDa subunit 2 translocase of outer membrane 7
kDa subunit 2		 0.75 0.29 -0.33
58 AT1G08930 Major facilitator superfamily protein EARLY RESPONSE TO DEHYDRATION 6 0.74 0.32 -0.31
59 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.74 0.31 -0.31
60 AT3G03420 Ku70-binding family protein 0.74 0.32 -0.31
61 AT5G02050 Mitochondrial glycoprotein family protein 0.74 0.3 -0.32
62 AT4G19410 Pectinacetylesterase family protein 0.74 0.32 -0.32
63 AT5G23300 pyrimidine d pyrimidine d 0.74 0.31 -0.33
64 AT4G31130 Protein of unknown function (DUF1218) 0.74 0.3 -0.34
65 AT5G09270 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.73 0.31 -0.31
66 AT2G30050 transducin family protein / WD-40 repeat family protein 0.73 0.3 -0.32
67 AT3G22320 Eukaryotic rpb5 RNA polymerase subunit family protein ATRPABC24.3, NRPB5, NRPD5, RNA
POLYMERASE II FIFTH LARGEST
SUBUNIT, A		 0.73 0.32 -0.33
68 AT5G25220 KNOTTED1-like homeobox gene 3 KNOTTED1-like homeobox gene 3 -0.73 0.3 -0.32
69 AT2G44790 uclacyanin 2 uclacyanin 2 0.73 0.32 -0.34
70 AT2G15000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast
hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.3 -0.3
71 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 0.73 0.34 -0.3
72 AT3G12030 Protein of unknown function DUF106, transmembrane 0.73 0.31 -0.31
73 AT4G37660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 0.73 0.3 -0.31
74 AT1G80310 sulfate transmembrane transporters molybdate transporter 2 -0.72 0.31 -0.31
75 AT4G38350 Patched family protein -0.72 0.31 -0.31
76 AT1G79520 Cation efflux family protein -0.71 0.31 -0.29
77 AT3G06330 RING/U-box superfamily protein -0.71 0.33 -0.32
78 AT5G49990 Xanthine/uracil permease family protein -0.71 0.33 -0.32
79 AT2G25590 Plant Tudor-like protein -0.71 0.3 -0.31
80 AT5G57610 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.71 0.32 -0.32
81 AT1G19715 Mannose-binding lectin superfamily protein -0.7 0.3 -0.31
82 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.7 0.3 -0.31
83 AT1G76110 HMG (high mobility group) box protein with ARID/BRIGHT
DNA-binding domain		 -0.7 0.29 -0.34
84 AT3G28760 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate
synthase, prokaryotic-type (InterPro:IPR002812); Has 390
Blast hits to 390 proteins in 131 species: Archae - 144;
Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54;
Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).		 -0.69 0.31 -0.33
85 AT1G70420 Protein of unknown function (DUF1645) -0.69 0.32 -0.33
86 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 -0.69 0.33 -0.34
87 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 -0.69 0.32 -0.3
88 AT4G17030 expansin-like B1 AT-EXPR, expansin-like B1,
ATEXPR1, ATHEXP BETA 3.1,
expansin-like B1, EXPR		 -0.69 0.33 -0.32
89 AT2G36390 starch branching enzyme 2.1 BRANCHING ENZYME 3, starch
branching enzyme 2.1		 -0.68 0.33 -0.33
90 AT3G45900 Ribonuclease P protein subunit P38-related -0.68 0.32 -0.32
91 AT1G48840 Plant protein of unknown function (DUF639) -0.68 0.34 -0.31
92 AT3G26740 CCR-like CCR-like -0.68 0.31 -0.29
93 AT5G57040 Lactoylglutathione lyase / glyoxalase I family protein -0.68 0.31 -0.32
94 AT3G43220 Phosphoinositide phosphatase family protein -0.67 0.32 -0.32
95 AT3G49880 glycosyl hydrolase family protein 43 -0.67 0.32 -0.3
96 AT1G55460 DNA/RNA-binding protein Kin17, conserved region -0.67 0.33 -0.29
97 AT4G34480 O-Glycosyl hydrolases family 17 protein -0.66 0.31 -0.32
98 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.66 0.32 -0.31
99 AT3G23340 casein kinase I-like 10 casein kinase I-like 10 -0.66 0.3 -0.31
100 AT5G37360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.66 0.33 -0.33
101 AT5G03190 conserved peptide upstream open reading frame 47 conserved peptide upstream open
reading frame 47		 -0.66 0.33 -0.3
102 AT4G24740 FUS3-complementing gene 2 FUS3-complementing gene 2, AME1,
FUS3-complementing gene 2		 -0.65 0.31 -0.3
103 AT5G58160 actin binding -0.65 0.34 -0.32
104 AT2G42950 Magnesium transporter CorA-like family protein -0.65 0.32 -0.3
105 AT1G60690 NAD(P)-linked oxidoreductase superfamily protein -0.65 0.31 -0.33
106 AT5G24080 Protein kinase superfamily protein -0.65 0.29 -0.31
107 AT1G73570 HCP-like superfamily protein -0.65 0.32 -0.31
108 AT3G16360 HPT phosphotransmitter 4 HPT phosphotransmitter 4 -0.65 0.31 -0.31
109 AT3G18500 DNAse I-like superfamily protein -0.65 0.33 -0.33
110 AT5G03650 starch branching enzyme 2.2 starch branching enzyme 2.2 -0.65 0.33 -0.32
111 AT3G62800 double-stranded-RNA-binding protein 4 double-stranded-RNA-binding
protein 4		 -0.64 0.32 -0.34
112 AT4G29070 Phospholipase A2 family protein -0.64 0.33 -0.32
113 AT1G01520 Homeodomain-like superfamily protein ALTERED SEED GERMINATION 4 -0.64 0.31 -0.3
114 AT2G19780 Leucine-rich repeat (LRR) family protein -0.64 0.33 -0.3
115 AT3G53540 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF3741)
(TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in
206 species: Archae - 2; Bacteria - 409; Metazoa - 304;
Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes -
485 (source: NCBI BLink).		 -0.64 0.32 -0.34
116 AT5G66110 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 27		 -0.64 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
117 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.84 0.46 -0.48 C0123
118 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.76 0.45 -0.45 C0109
119 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		-0.71 0.45 -0.45 C0210