AT4G13960 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G13960
Description F-box/RNI-like superfamily protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G13960 F-box/RNI-like superfamily protein 1 0.31 -0.32
2 AT1G75790 SKU5 similar 18 SKU5 similar 18 -0.72 0.32 -0.3
3 AT4G03770 transposable element gene 0.7 0.3 -0.32
4 AT5G12180 calcium-dependent protein kinase 17 calcium-dependent protein kinase
17		 -0.68 0.34 -0.32
5 AT5G42400 SET domain protein 25 ARABIDOPSIS TRITHORAX-RELATED7,
SET domain protein 25		 -0.67 0.31 -0.3
6 AT5G41330 BTB/POZ domain with WD40/YVTN repeat-like protein -0.66 0.32 -0.32
7 AT5G48330 Regulator of chromosome condensation (RCC1) family protein RCC1/UVR8/GEF-like 2 0.66 0.33 -0.29
8 AT3G25260 Major facilitator superfamily protein -0.66 0.32 -0.34
9 AT5G10120 Ethylene insensitive 3 family protein -0.66 0.32 -0.32
10 AT5G24130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: petal, leaf whorl, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.65 0.34 -0.32
11 AT3G07274 unknown pseudogene -0.65 0.29 -0.32
12 AT3G61740 SET domain protein 14 ATX3, SET domain protein 14 -0.65 0.33 -0.33
13 AT4G05550 transposable element gene 0.65 0.32 -0.33
14 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4		 -0.65 0.31 -0.32
15 AT5G08100 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 asparaginase A1 0.65 0.32 -0.33
16 AT1G48360 zinc ion binding;nucleic acid binding;hydrolases, acting on
acid anhydrides, in phosphorus-containing anhydrides		 -0.64 0.33 -0.31
17 AT4G38680 glycine rich protein 2 ARABIDOPSIS THALIANA COLD SHOCK
PROTEIN 2, COLD SHOCK DOMAIN
PROTEIN 2, COLD SHOCK PROTEIN 2,
glycine rich protein 2		 0.64 0.3 -0.31
18 AT1G69430 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26650.1); Has 216 Blast hits
to 215 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.34
19 AT1G62940 acyl-CoA synthetase 5 acyl-CoA synthetase 5 -0.64 0.34 -0.32
20 AT1G22015 Galactosyltransferase family protein DD46 0.64 0.32 -0.31
21 AT5G65550 UDP-Glycosyltransferase superfamily protein -0.64 0.32 -0.32
22 AT1G14940 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.64 0.31 -0.32
23 AT2G42100 Actin-like ATPase superfamily protein 0.64 0.34 -0.3
24 AT4G14600 Target SNARE coiled-coil domain protein 0.63 0.33 -0.31
25 AT2G32690 glycine-rich protein 23 GLYCINE-RICH PROTEIN 23,
glycine-rich protein 23		 0.63 0.34 -0.31
26 AT4G15300 cytochrome P450, family 702, subfamily A, polypeptide 2 cytochrome P450, family 702,
subfamily A, polypeptide 2		 -0.63 0.31 -0.32
27 AT5G26140 Putative lysine decarboxylase family protein ATLOG9, LONELY GUY 9 0.63 0.32 -0.32
28 AT1G02490 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.63 0.3 -0.33
29 AT1G69170 Squamosa promoter-binding protein-like (SBP domain)
transcription factor family protein		 -0.62 0.33 -0.32
30 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 0.62 0.3 -0.33
31 AT5G01290 mRNA capping enzyme family protein -0.62 0.31 -0.31
32 AT1G66750 CDK-activating kinase 4 AT;CDKD;2, CDK-activating kinase
4, CDK-ACTIVATING KINASE 4,
CYCLIN-DEPENDENT KINASE D1;2,
CDKD;2		 0.62 0.32 -0.3
33 AT2G44180 methionine aminopeptidase 2A methionine aminopeptidase 2A 0.61 0.29 -0.3
34 AT5G51840 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.61 0.3 -0.3
35 AT5G60090 Protein kinase superfamily protein -0.61 0.31 -0.31
36 AT2G25140 casein lytic proteinase B4 CASEIN LYTIC PROTEINASE B-M,
casein lytic proteinase B4, HEAT
SHOCK PROTEIN 98.7		 -0.61 0.31 -0.32
37 AT5G18475 Pentatricopeptide repeat (PPR) superfamily protein -0.61 0.3 -0.31
38 AT5G26120 alpha-L-arabinofuranosidase 2 alpha-L-arabinofuranosidase 2,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 2		 0.61 0.32 -0.32
39 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 -0.6 0.31 -0.32
40 AT3G28280 BEST Arabidopsis thaliana protein match is: F-box family
protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to
100 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.29 -0.32
41 ATMG01360 cytochrome oxidase cytochrome oxidase -0.6 0.31 -0.31
42 AT1G05120 Helicase protein with RING/U-box domain -0.6 0.3 -0.32
43 AT1G35570 transposable element gene -0.6 0.31 -0.31
44 AT1G06760 winged-helix DNA-binding transcription factor family
protein		 0.6 0.3 -0.32
45 AT5G44740 Y-family DNA polymerase H Y-family DNA polymerase H 0.59 0.33 -0.34
46 AT4G04370 Tetratricopeptide repeat (TPR)-like superfamily protein 0.59 0.34 -0.31
47 AT5G24390 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.59 0.31 -0.33
48 AT5G07040 RING/U-box superfamily protein 0.59 0.32 -0.34
49 AT1G43790 tracheary element differentiation-related 6 tracheary element
differentiation-related 6		 0.59 0.33 -0.32
50 AT3G30220 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.32 -0.32
51 AT3G47700 RINT-1 / TIP-1 family maigo2 0.59 0.3 -0.33
52 AT5G04050 RNA-directed DNA polymerase (reverse transcriptase) -0.59 0.32 -0.32
53 AT5G37610 Eukaryotic porin family protein -0.59 0.31 -0.31
54 AT5G07050 nodulin MtN21 /EamA-like transporter family protein -0.59 0.36 -0.31
55 AT3G31920 transposable element gene -0.59 0.32 -0.3
56 AT3G43100 transposable element gene -0.58 0.32 -0.32
57 AT1G53590 Calcium-dependent lipid-binding (CaLB domain) family
protein		 NTMC2T6.1, NTMC2TYPE6.1 -0.58 0.33 -0.32
58 AT2G10450 14-3-3 family protein -0.58 0.34 -0.33
59 AT4G07370 transposable element gene -0.58 0.31 -0.3
60 AT3G23870 Protein of unknown function (DUF803) -0.58 0.32 -0.3
61 AT2G38150 alpha 1,4-glycosyltransferase family protein 0.58 0.34 -0.3
62 AT3G27410 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.33 -0.32
63 AT5G51870 AGAMOUS-like 71 AGAMOUS-like 71 -0.58 0.35 -0.32
64 AT5G57200 ENTH/ANTH/VHS superfamily protein -0.58 0.3 -0.31
65 AT4G40020 Myosin heavy chain-related protein 0.58 0.32 -0.33
66 AT5G55750 hydroxyproline-rich glycoprotein family protein -0.58 0.31 -0.34
67 AT5G22540 Plant protein of unknown function (DUF247) -0.58 0.31 -0.31
68 AT5G47620 RNA-binding (RRM/RBD/RNP motifs) family protein -0.58 0.32 -0.32
69 AT1G05205 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.58 0.32 -0.32
70 AT5G53060 RNA-binding KH domain-containing protein -0.58 0.3 -0.32
71 AT1G48390 RNI-like superfamily protein 0.58 0.32 -0.31
72 AT3G15490 Regulator of Vps4 activity in the MVB pathway protein -0.57 0.3 -0.31
73 AT1G16380 Cation/hydrogen exchanger family protein ATCHX1, CATION EXCHANGER 1 -0.57 0.31 -0.32
74 ATCG01020 ribosomal protein L32 ribosomal protein L32 -0.57 0.28 -0.32
75 AT3G57100 Protein of unknown function (DUF677) 0.57 0.31 -0.32
76 AT4G03750 transposable element gene -0.57 0.3 -0.3
77 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein -0.57 0.3 -0.31
78 AT5G36930 Disease resistance protein (TIR-NBS-LRR class) family 0.57 0.32 -0.32
79 AT2G27700 eukaryotic translation initiation factor 2 family protein /
eIF-2 family protein		 -0.57 0.32 -0.32
80 AT5G53670 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sperm cell; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.57 0.32 -0.32
81 AT2G02515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: central cell, embryo;
EXPRESSED DURING: C globular stage; Has 18 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.57 0.31 -0.3
82 AT4G18890 BES1/BZR1 homolog 3 BES1/BZR1 homolog 3 -0.56 0.32 -0.31
83 AT1G78720 SecY protein transport family protein -0.56 0.34 -0.31
84 AT3G24460 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.56 0.34 -0.34
85 AT3G32060 transposable element gene 0.56 0.31 -0.31
86 AT4G04650 RNA-directed DNA polymerase (reverse transcriptase)-related
family protein		 -0.56 0.33 -0.31
87 AT1G75430 BEL1-like homeodomain 11 BEL1-like homeodomain 11 -0.56 0.33 -0.3
88 AT3G07600 Heavy metal transport/detoxification superfamily protein 0.56 0.31 -0.32
89 AT1G60450 galactinol synthase 7 galactinol synthase 7, galactinol
synthase 7		 -0.56 0.31 -0.33
90 AT4G30380 Barwin-related endoglucanase -0.56 0.3 -0.32
91 AT1G37060 transposable element gene -0.55 0.33 -0.32
92 AT2G11150 transposable element gene -0.55 0.31 -0.31
93 AT5G01280 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.55 0.31 -0.34
94 AT4G24150 growth-regulating factor 8 growth-regulating factor 8,
growth-regulating factor 8		 -0.55 0.32 -0.31
95 AT2G32930 zinc finger nuclease 2 zinc finger nuclease 2 -0.55 0.31 -0.31
96 AT2G28010 Eukaryotic aspartyl protease family protein -0.55 0.33 -0.33
97 AT1G26860 transposable element gene 0.55 0.31 -0.3
98 AT1G43810 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.31 -0.31
99 AT5G28560 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; Has 0 Blast hits to 0 proteins in 0 species
(source: NCBI BLink).		 0.55 0.3 -0.31
100 AT3G26614 transposable element gene -0.55 0.33 -0.32
101 AT3G58740 citrate synthase 1 citrate synthase 1 -0.55 0.3 -0.31
102 AT5G48550 F-box associated ubiquitination effector family protein 0.55 0.31 -0.3
103 AT4G22650 CONTAINS InterPro DOMAIN/s: Plant lipid transfer
protein/seed storage/trypsin-alpha amylase inhibitor
(InterPro:IPR003612); BEST Arabidopsis thaliana protein
match is: Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
(TAIR:AT4G22640.1); Has 25 Blast hits to 25 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.55 0.31 -0.32
104 AT2G45610 alpha/beta-Hydrolases superfamily protein -0.54 0.3 -0.31
105 AT2G28270 Cysteine/Histidine-rich C1 domain family protein -0.54 0.31 -0.32
106 AT3G42340 transposable element gene 0.54 0.32 -0.33
107 AT5G39930 CLP1-similar protein 5 CLP1-similar protein 5 -0.54 0.3 -0.32
108 AT3G12640 RNA binding (RRM/RBD/RNP motifs) family protein -0.54 0.31 -0.32
109 AT1G18860 WRKY DNA-binding protein 61 WRKY DNA-BINDING PROTEIN 61, WRKY
DNA-binding protein 61		 -0.54 0.31 -0.31
110 AT2G17000 Mechanosensitive ion channel family protein -0.54 0.31 -0.3
111 AT5G59660 Leucine-rich repeat protein kinase family protein 0.54 0.31 -0.32
112 AT1G76910 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.54 0.32 -0.32
113 AT1G43970 unknown protein; Has 10 Blast hits to 8 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.54 0.3 -0.33
114 AT5G37030 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.54 0.31 -0.32
115 AT5G25410 Protein of Unknown Function (DUF239) -0.54 0.31 -0.34
116 AT3G30190 transposable element gene -0.54 0.33 -0.31
117 AT1G63590 Receptor-like protein kinase-related family protein 0.54 0.33 -0.33
118 AT1G18530 EF hand calcium-binding protein family 0.54 0.33 -0.29
119 AT3G30150 transposable element gene 0.54 0.33 -0.31
120 AT5G28010 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.53 0.34 -0.32
121 AT3G07930 DNA glycosylase superfamily protein 0.53 0.3 -0.33
122 AT4G05250 Ubiquitin-like superfamily protein 0.53 0.31 -0.34
123 AT4G00780 TRAF-like family protein 0.53 0.32 -0.3
124 AT5G58580 TOXICOS EN LEVADURA 63 TOXICOS EN LEVADURA 63, TOXICOS EN
LEVADURA 63		 0.53 0.32 -0.31
125 AT3G20950 cytochrome P450, family 705, subfamily A, polypeptide 32 cytochrome P450, family 705,
subfamily A, polypeptide 32		 0.53 0.31 -0.31
126 AT3G29300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 6 growth stages; Has 451 Blast hits to
349 proteins in 91 species: Archae - 0; Bacteria - 85;
Metazoa - 81; Fungi - 88; Plants - 18; Viruses - 1; Other
Eukaryotes - 178 (source: NCBI BLink).		 0.53 0.31 -0.3
127 AT2G22070 pentatricopeptide (PPR) repeat-containing protein 0.53 0.33 -0.31
128 AT1G08700 Presenilin-1 Presenilin-1 0.53 0.32 -0.34
129 AT2G11830 transposable element gene 0.53 0.31 -0.33
130 AT2G18380 GATA transcription factor 20 GATA transcription factor 20,
hanaba taranu like 1		 0.53 0.33 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
131 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		-0.77 0.44 -0.45 C0105