AT5G04210 : -
Query Information
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AGICode AT5G04210
Description CCCH-type zinc fingerfamily protein with RNA-binding domain
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain 1 0.31 -0.31
2 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 -0.74 0.32 -0.31
3 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 -0.73 0.3 -0.31
4 AT4G36630 Vacuolar sorting protein 39 EMBRYO DEFECTIVE 2754 -0.73 0.29 -0.32
5 AT4G09550 AtGCP3 interacting protein 1 ARABIDOPSIS ATGCP3 INTERACTING
PROTEIN 1, AtGCP3 interacting
protein 1		 0.72 0.3 -0.33
6 AT2G34610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G30190.1); Has 342 Blast hits
to 279 proteins in 74 species: Archae - 0; Bacteria - 7;
Metazoa - 76; Fungi - 18; Plants - 51; Viruses - 0; Other
Eukaryotes - 190 (source: NCBI BLink).		 -0.71 0.3 -0.32
7 AT3G14080 Small nuclear ribonucleoprotein family protein 0.71 0.32 -0.3
8 AT3G22070 proline-rich family protein 0.71 0.3 -0.32
9 AT3G15120 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.71 0.29 -0.34
10 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 -0.71 0.32 -0.29
11 AT1G04120 multidrug resistance-associated protein 5 ATP-binding cassette C5,
Arabidopsis thaliana ATP-binding
cassette C5, multidrug
resistance-associated protein 5,
MULTIDRUG RESISTANCE PROTEIN 5,
multidrug resistance-associated
protein 5		 -0.7 0.31 -0.32
12 AT3G27870 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.7 0.31 -0.31
13 AT1G59650 Protein of unknown function (DUF1336) CW14 -0.7 0.3 -0.31
14 AT3G59770 sacI homology domain-containing protein / WW
domain-containing protein		 ARABIDOPSIS THALIANA SUPPRESSOR OF
ACTIN 9, SUPPRESSOR OF ACTIN 9		 -0.69 0.32 -0.3
15 AT3G20290 EPS15 homology domain 1 EPS15 homology domain 1, EPS15
homology domain 1		 -0.69 0.3 -0.29
16 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.69 0.3 -0.33
17 AT3G09980 Family of unknown function (DUF662) 0.68 0.32 -0.31
18 AT1G43970 unknown protein; Has 10 Blast hits to 8 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.3 -0.29
19 AT2G41280 late embryogenesis abundant protein (M10) / LEA protein M10 ATM10, M10 -0.68 0.31 -0.31
20 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 -0.67 0.3 -0.32
21 AT5G40340 Tudor/PWWP/MBT superfamily protein -0.67 0.31 -0.31
22 AT4G32620 Enhancer of polycomb-like transcription factor protein -0.67 0.33 -0.31
23 AT3G11910 ubiquitin-specific protease 13 AtUBP13, ubiquitin-specific
protease 13		 -0.67 0.35 -0.31
24 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.67 0.32 -0.32
25 AT2G36410 Family of unknown function (DUF662) 0.67 0.32 -0.3
26 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 -0.67 0.31 -0.31
27 AT2G25730 unknown protein; Has 157 Blast hits to 144 proteins in 62
species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source:
NCBI BLink).		 -0.67 0.33 -0.31
28 AT3G49162 pseudogene of glycoside hydrolase family 28 protein 0.67 0.3 -0.33
29 AT5G44440 FAD-binding Berberine family protein -0.66 0.31 -0.3
30 AT1G68270 AMP-dependent synthetase and ligase family protein -0.66 0.3 -0.34
31 AT4G17980 NAC domain containing protein 71 NAC domain containing protein 71,
NAC domain containing protein 71		 0.66 0.31 -0.29
32 AT5G06430 Thioredoxin superfamily protein 0.66 0.29 -0.35
33 AT2G04830 Protein of unknown function (DUF295) -0.65 0.32 -0.31
34 AT1G14070 fucosyltransferase 7 fucosyltransferase 7 -0.65 0.33 -0.35
35 AT3G07274 unknown pseudogene -0.65 0.3 -0.31
36 AT1G69430 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26650.1); Has 216 Blast hits
to 215 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.32 -0.31
37 AT2G21820 unknown protein; Has 45 Blast hits to 45 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.34 -0.32
38 AT4G14600 Target SNARE coiled-coil domain protein 0.64 0.31 -0.33
39 AT4G27760 NAD(P)-binding Rossmann-fold superfamily protein FOREVER YOUNG, FEY3 0.64 0.33 -0.33
40 AT1G53790 F-box and associated interaction domains-containing protein -0.64 0.32 -0.31
41 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 -0.64 0.3 -0.3
42 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE -0.64 0.33 -0.33
43 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 -0.64 0.3 -0.29
44 AT1G07160 Protein phosphatase 2C family protein -0.64 0.31 -0.31
45 AT1G50470 F-box associated ubiquitination effector family protein -0.63 0.33 -0.33
46 AT5G28630 glycine-rich protein 0.63 0.31 -0.31
47 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 -0.63 0.32 -0.31
48 AT4G14220 RING-H2 group F1A RING-H2 group F1A -0.63 0.3 -0.34
49 AT1G68000 phosphatidylinositol synthase 1 PHOSPHATIDYLINOSITOL SYNTHASE,
phosphatidylinositol synthase 1,
phosphatidylinositol synthase 1		 0.63 0.32 -0.32
50 AT2G47410 WD40/YVTN repeat-like-containing domain;Bromodomain -0.63 0.33 -0.29
51 AT5G52140 RING/U-box superfamily protein 0.63 0.33 -0.3
52 AT5G58410 HEAT/U-box domain-containing protein -0.63 0.32 -0.32
53 AT1G34080 transposable element gene -0.63 0.33 -0.31
54 AT5G55240 ARABIDOPSIS THALIANA PEROXYGENASE 2 ARABIDOPSIS THALIANA PEROXYGENASE
2		 -0.63 0.31 -0.32
55 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 -0.63 0.32 -0.32
56 AT5G24740 Protein of unknown function (DUF1162) -0.63 0.31 -0.31
57 AT4G14840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22520.1); Has 1681 Blast hits
to 1532 proteins in 283 species: Archae - 19; Bacteria -
179; Metazoa - 579; Fungi - 131; Plants - 223; Viruses - 5;
Other Eukaryotes - 545 (source: NCBI BLink).		 -0.63 0.29 -0.32
58 AT4G28250 expansin B3 expansin B3, ATHEXP BETA 1.6,
expansin B3		 0.63 0.31 -0.34
59 AT2G23240 Plant EC metallothionein-like protein, family 15 Arabidopsis thaliana
metallothionein 4b		 -0.63 0.32 -0.31
60 AT3G46220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2042 (InterPro:IPR018611); Has 559
Blast hits to 533 proteins in 154 species: Archae - 3;
Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50;
Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink).		 -0.63 0.33 -0.32
61 AT2G25230 myb domain protein 100 myb domain protein 100, myb domain
protein 100		 0.62 0.33 -0.34
62 AT5G41330 BTB/POZ domain with WD40/YVTN repeat-like protein -0.62 0.3 -0.34
63 AT1G40390 DNAse I-like superfamily protein -0.62 0.33 -0.3
64 AT3G28280 BEST Arabidopsis thaliana protein match is: F-box family
protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to
100 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.31 -0.34
65 AT3G24400 pseudogene, protein kinase family, contains Pfam PF00069:
Protein kinase domain; blastp match of 72% identity and
1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876
unnamed protein product {Brassica napus}		 proline-rich extensin-like
receptor kinase 2, proline-rich
extensin-like receptor kinase 2		 -0.62 0.32 -0.32
66 AT2G33260 Tryptophan/tyrosine permease 0.62 0.31 -0.32
67 AT3G08910 DNAJ heat shock family protein 0.62 0.32 -0.31
68 AT1G06970 cation/hydrogen exchanger 14 ATCHX14, cation/hydrogen exchanger
14		 0.62 0.32 -0.3
69 AT1G55330 arabinogalactan protein 21 arabinogalactan protein 21,
ARABINOGALACTAN PROTEIN 21		 0.62 0.35 -0.33
70 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 -0.62 0.3 -0.33
71 AT5G44740 Y-family DNA polymerase H Y-family DNA polymerase H 0.61 0.32 -0.3
72 AT3G59910 Ankyrin repeat family protein -0.61 0.35 -0.32
73 AT4G18593 dual specificity protein phosphatase-related 0.61 0.31 -0.29
74 AT3G14360 alpha/beta-Hydrolases superfamily protein -0.61 0.32 -0.3
75 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.61 0.32 -0.3
76 AT5G26210 alfin-like 4 alfin-like 4 0.61 0.32 -0.32
77 AT1G80420 BRCT domain-containing DNA repair protein ATXRCC1 0.61 0.34 -0.32
78 AT3G42340 transposable element gene 0.61 0.32 -0.33
79 AT3G09850 D111/G-patch domain-containing protein -0.61 0.32 -0.31
80 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.31 -0.33
81 AT5G42400 SET domain protein 25 ARABIDOPSIS TRITHORAX-RELATED7,
SET domain protein 25		 -0.61 0.32 -0.32
82 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.3 -0.32
83 AT1G54470 RNI-like superfamily protein resistance to Peronospora
parasitica 27		 0.61 0.32 -0.33
84 AT3G20720 unknown protein; Has 184 Blast hits to 181 proteins in 66
species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi -
0; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 -0.61 0.32 -0.31
85 AT4G35740 DEAD/DEAH box RNA helicase family protein A. THALIANA RECQ HELICASE 3,
RecQl3		 0.61 0.32 -0.32
86 AT1G71770 poly(A)-binding protein 5 poly(A)-binding protein 5 0.61 0.3 -0.29
87 AT5G44880 transposable element gene 0.61 0.32 -0.31
88 AT3G50420 Pentatricopeptide repeat (PPR) superfamily protein -0.61 0.3 -0.33
89 AT2G42100 Actin-like ATPase superfamily protein 0.61 0.33 -0.32
90 AT5G58040 homolog of yeast FIP1 [V] homolog of yeast FIP1 [V],
ATFIPS5, homolog of yeast FIP1
[V], FIPS5		 -0.61 0.3 -0.3
91 AT5G60320 Concanavalin A-like lectin protein kinase family protein 0.6 0.33 -0.3
92 AT4G32640 Sec23/Sec24 protein transport family protein -0.6 0.32 -0.32
93 AT4G27890 HSP20-like chaperones superfamily protein 0.6 0.32 -0.32
94 AT3G42590 transposable element gene 0.6 0.32 -0.32
95 AT2G25620 DNA-binding protein phosphatase 1 DNA-binding protein phosphatase 1,
DNA-binding protein phosphatase 1		 -0.6 0.3 -0.31
96 AT3G09530 exocyst subunit exo70 family protein H3 exocyst subunit exo70 family
protein H3, exocyst subunit exo70
family protein H3		 -0.6 0.33 -0.33
97 AT4G00420 Double-stranded RNA-binding domain (DsRBD)-containing
protein		 0.6 0.32 -0.3
98 AT1G27100 Actin cross-linking protein 0.6 0.31 -0.32
99 AT4G21323 Subtilase family protein -0.6 0.31 -0.33
100 AT5G61120 BEST Arabidopsis thaliana protein match is: Polynucleotidyl
transferase, ribonuclease H-like superfamily protein
(TAIR:AT5G61090.1); Has 125 Blast hits to 115 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.6 0.31 -0.31
101 AT5G35660 Glycine-rich protein family -0.6 0.33 -0.31
102 AT4G10280 RmlC-like cupins superfamily protein 0.6 0.32 -0.31
103 AT5G19240 Glycoprotein membrane precursor GPI-anchored 0.6 0.32 -0.32
104 AT5G37450 Leucine-rich repeat protein kinase family protein 0.6 0.31 -0.3
105 AT3G19140 RING/U-box superfamily protein DAY NEUTRAL FLOWERING 0.6 0.32 -0.31
106 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 -0.59 0.31 -0.32
107 AT2G42620 RNI-like superfamily protein MORE AXILLARY BRANCHES 2, ORESARA
9, PLEIOTROPIC PHOTOSIGNALING		 -0.59 0.31 -0.3
108 AT2G10760 transposable element gene -0.59 0.32 -0.32
109 AT5G40410 Tetratricopeptide repeat (TPR)-like superfamily protein -0.59 0.34 -0.3
110 AT5G48280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.59 0.31 -0.32
111 AT1G55410 pseudogene, CHP-rich zinc finger protein, putative, similar
to putative CHP-rich zinc finger protein GB:CAB77744
GI:7268217 from (Arabidopsis thaliana)		 -0.59 0.32 -0.32
112 AT2G30730 Protein kinase superfamily protein 0.59 0.34 -0.31
113 AT1G57650 ATP binding -0.59 0.32 -0.3
114 AT3G52900 Family of unknown function (DUF662) 0.59 0.32 -0.31
115 AT5G15400 U-box domain-containing protein -0.59 0.32 -0.32
116 AT5G18475 Pentatricopeptide repeat (PPR) superfamily protein -0.59 0.32 -0.32
117 AT3G44760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root, flower; EXPRESSED
DURING: petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF626) (TAIR:AT3G44770.1); Has 9 Blast hits to 9
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.59 0.29 -0.32
118 AT2G29510 Protein of unknown function (DUF3527) 0.58 0.32 -0.3
119 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 -0.58 0.31 -0.34
120 AT1G73000 PYR1-like 3 PYR1-like 3, regulatory components
of ABA receptor 13		 0.58 0.3 -0.31
121 AT3G27410 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.33 -0.32
122 AT3G42350 transposable element gene -0.58 0.32 -0.31
123 AT2G13270 transposable element gene -0.58 0.33 -0.33
124 AT5G53840 F-box/RNI-like/FBD-like domains-containing protein 0.58 0.34 -0.31
125 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 0.58 0.31 -0.33
126 AT3G30190 transposable element gene -0.58 0.31 -0.31
127 AT1G43870 transposable element gene 0.58 0.32 -0.31
128 AT5G43310 COP1-interacting protein-related -0.58 0.31 -0.33
129 AT4G17140 pleckstrin homology (PH) domain-containing protein -0.57 0.31 -0.33
130 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 -0.57 0.3 -0.32
131 AT5G27050 AGAMOUS-like 101 AGAMOUS-like 101 -0.57 0.32 -0.33
132 AT2G13550 unknown protein; Has 23 Blast hits to 20 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
BLink).		 -0.57 0.33 -0.32
133 AT2G14570 transposable element gene -0.57 0.32 -0.29
134 AT5G40750 FBD / Leucine Rich Repeat domains containing protein -0.57 0.29 -0.34
135 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 -0.57 0.35 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.67 0.43 -0.46 C0073