AT5G13510 : EMBRYO DEFECTIVE 3136
Query Information
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AGICode AT5G13510
Description Ribosomal protein L10 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 1 0.31 -0.31
2 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.95 0.31 -0.32
3 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.95 0.31 -0.31
4 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.94 0.29 -0.3
5 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.94 0.33 -0.3
6 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.94 0.31 -0.32
7 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.94 0.33 -0.32
8 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.94 0.3 -0.32
9 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.94 0.31 -0.31
10 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.93 0.33 -0.3
11 AT3G54210 Ribosomal protein L17 family protein 0.93 0.32 -0.31
12 AT4G01310 Ribosomal L5P family protein 0.93 0.32 -0.3
13 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.93 0.33 -0.33
14 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.93 0.32 -0.32
15 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.93 0.33 -0.29
16 AT2G33450 Ribosomal L28 family 0.93 0.3 -0.32
17 AT3G13120 Ribosomal protein S10p/S20e family protein 0.93 0.32 -0.3
18 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.93 0.33 -0.32
19 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.93 0.33 -0.32
20 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.93 0.31 -0.35
21 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.92 0.31 -0.33
22 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.92 0.32 -0.33
23 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.92 0.29 -0.33
24 AT5G65220 Ribosomal L29 family protein 0.92 0.34 -0.28
25 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.92 0.27 -0.35
26 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.92 0.31 -0.32
27 AT5G47190 Ribosomal protein L19 family protein 0.92 0.31 -0.31
28 AT2G43030 Ribosomal protein L3 family protein 0.92 0.31 -0.33
29 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.92 0.32 -0.32
30 AT1G29070 Ribosomal protein L34 0.92 0.29 -0.32
31 AT2G18710 SECY homolog 1 SECY homolog 1 0.92 0.32 -0.33
32 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.92 0.32 -0.3
33 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.91 0.3 -0.32
34 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.91 0.31 -0.31
35 AT2G01590 chlororespiratory reduction 3 CHLORORESPIRATORY REDUCTION 3 0.91 0.33 -0.31
36 AT5G55220 trigger factor type chaperone family protein 0.91 0.31 -0.31
37 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.91 0.33 -0.31
38 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.91 0.33 -0.34
39 AT5G52970 thylakoid lumen 15.0 kDa protein 0.91 0.33 -0.32
40 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.91 0.31 -0.32
41 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.91 0.31 -0.28
42 AT4G17560 Ribosomal protein L19 family protein 0.9 0.32 -0.32
43 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.9 0.32 -0.31
44 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.33 -0.32
45 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.9 0.32 -0.31
46 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.9 0.32 -0.31
47 AT3G60750 Transketolase 0.9 0.33 -0.31
48 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.9 0.31 -0.3
49 AT3G12930 Lojap-related protein 0.9 0.33 -0.33
50 AT1G53520 Chalcone-flavanone isomerase family protein 0.9 0.31 -0.31
51 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.9 0.31 -0.33
52 AT3G01480 cyclophilin 38 ARABIDOPSIS CYCLOPHILIN 38,
cyclophilin 38		 0.9 0.31 -0.3
53 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.9 0.3 -0.35
54 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.9 0.31 -0.31
55 AT2G24090 Ribosomal protein L35 0.9 0.31 -0.31
56 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.9 0.3 -0.3
57 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.9 0.31 -0.3
58 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.9 0.31 -0.31
59 AT2G44920 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.32 -0.32
60 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.9 0.32 -0.31
61 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.9 0.32 -0.31
62 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.9 0.3 -0.3
63 AT5G46420 16S rRNA processing protein RimM family 0.9 0.31 -0.31
64 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.89 0.32 -0.31
65 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.89 0.31 -0.3
66 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.89 0.32 -0.3
67 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.89 0.31 -0.32
68 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.89 0.33 -0.32
69 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.89 0.34 -0.3
70 AT3G28460 methyltransferases 0.89 0.32 -0.3
71 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.89 0.32 -0.32
72 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.89 0.32 -0.33
73 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.89 0.34 -0.32
74 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.89 0.31 -0.3
75 AT3G25660 Amidase family protein 0.89 0.32 -0.3
76 AT1G14270 CAAX amino terminal protease family protein 0.89 0.31 -0.34
77 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.89 0.32 -0.31
78 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.89 0.3 -0.31
79 AT5G54600 Translation protein SH3-like family protein 0.89 0.31 -0.3
80 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.89 0.32 -0.32
81 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.31 -0.34
82 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.28 -0.32
83 AT3G23700 Nucleic acid-binding proteins superfamily 0.89 0.32 -0.31
84 AT3G51140 Protein of unknown function (DUF3353) 0.89 0.3 -0.31
85 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.89 0.29 -0.31
86 AT1G14030 Rubisco methyltransferase family protein 0.89 0.31 -0.31
87 AT3G29185 Domain of unknown function (DUF3598) 0.88 0.33 -0.33
88 AT1G76450 Photosystem II reaction center PsbP family protein 0.88 0.34 -0.37
89 AT5G35630 glutamine synthetase 2 GLUTAMINE SYNTHETASE LIKE 1,
GLUTAMINE SYNTHETASE 2, glutamine
synthetase 2		 0.88 0.33 -0.32
90 AT4G34290 SWIB/MDM2 domain superfamily protein 0.88 0.31 -0.32
91 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.88 0.32 -0.29
92 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 0.88 0.31 -0.31
93 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.88 0.3 -0.31
94 AT3G56940 dicarboxylate diiron protein, putative (Crd1) ACSF, CHL27, COPPER RESPONSE
DEFECT 1		 0.88 0.32 -0.31
95 AT1G21500 unknown protein; Has 29 Blast hits to 29 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.88 0.31 -0.29
96 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.88 0.3 -0.31
97 AT1G43560 thioredoxin Y2 thioredoxin Y2, thioredoxin Y2 0.88 0.32 -0.33
98 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.88 0.3 -0.32
99 AT5G42070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.88 0.3 -0.33
100 AT3G27160 Ribosomal protein S21 family protein GLUCOSE HYPERSENSITIVE 1 0.88 0.32 -0.31
101 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 0.88 0.3 -0.33
102 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.88 0.3 -0.31
103 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.88 0.31 -0.34
104 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.88 0.28 -0.32
105 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.88 0.31 -0.31
106 AT4G18360 Aldolase-type TIM barrel family protein -0.84 0.32 -0.32
107 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.82 0.33 -0.31
108 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.8 0.32 -0.32
109 AT5G06750 Protein phosphatase 2C family protein -0.78 0.32 -0.31
110 AT5G18310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G48500.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.75 0.33 -0.31
111 AT3G57380 Glycosyltransferase family 61 protein -0.74 0.32 -0.31
112 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.74 0.33 -0.33
113 AT3G26440 Protein of unknown function (DUF707) -0.73 0.35 -0.31
114 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.72 0.33 -0.31
115 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.71 0.32 -0.31
116 AT2G02990 ribonuclease 1 RIBONUCLEASE 1, ribonuclease 1 -0.7 0.33 -0.29
117 AT1G07870 Protein kinase superfamily protein -0.7 0.34 -0.34
118 AT3G27210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25
species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7;
Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source:
NCBI BLink).		 -0.68 0.33 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
119 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.75 0.44 -0.43 C0051