AT5G20620 : ubiquitin 4
Query Information
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AGICode AT5G20620
Description ubiquitin 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G20620 ubiquitin 4 ubiquitin 4 1 0.32 -0.31
2 AT4G11080 HMG (high mobility group) box protein 3xHigh Mobility Group-box1 -0.71 0.31 -0.33
3 AT4G12440 adenine phosphoribosyl transferase 4 adenine phosphoribosyl transferase
4		 -0.66 0.31 -0.32
4 AT2G16700 actin depolymerizing factor 5 actin depolymerizing factor 5,
ATADF5		 0.65 0.32 -0.3
5 AT5G07690 myb domain protein 29 myb domain protein 29, myb domain
protein 29, PRODUCTION OF
METHIONINE-DERIVED GLUCOSINOLATE 2		 -0.65 0.32 -0.32
6 AT5G39990 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.64 0.31 -0.32
7 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 -0.64 0.32 -0.32
8 AT1G63540 hydroxyproline-rich glycoprotein family protein 0.64 0.31 -0.32
9 AT1G49630 presequence protease 2 presequence protease 2,
presequence protease 2		 -0.64 0.33 -0.31
10 AT1G47900 Plant protein of unknown function (DUF869) -0.63 0.3 -0.33
11 AT5G11410 Protein kinase superfamily protein 0.62 0.32 -0.31
12 AT5G02310 proteolysis 6 proteolysis 6 0.62 0.32 -0.32
13 AT5G19930 Protein of unknown function DUF92, transmembrane -0.6 0.32 -0.31
14 AT5G39590 TLD-domain containing nucleolar protein 0.6 0.31 -0.32
15 AT5G20660 Zn-dependent exopeptidases superfamily protein 0.6 0.32 -0.29
16 AT4G25020 D111/G-patch domain-containing protein -0.6 0.31 -0.31
17 AT1G65370 TRAF-like family protein -0.6 0.31 -0.32
18 AT5G45360 F-box family protein 0.59 0.31 -0.31
19 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 -0.59 0.29 -0.31
20 AT4G11920 cell cycle switch protein 52 A2 cell cycle switch protein 52 A2,
FIZZY-RELATED 1		 -0.58 0.31 -0.31
21 AT1G43170 ribosomal protein 1 ribosomal protein 1, embryo
defective 2207, ribosomal protein
1, RPL3A		 -0.58 0.33 -0.32
22 AT1G78970 lupeol synthase 1 ARABIDOPSIS THALIANA LUPEOL
SYNTHASE 1, lupeol synthase 1		 -0.58 0.33 -0.31
23 AT1G52280 RAB GTPase homolog G3D RAB GTPase homolog G3D, RAB GTPase
homolog G3D		 -0.58 0.28 -0.3
24 AT5G60460 Preprotein translocase Sec, Sec61-beta subunit protein 0.58 0.32 -0.29
25 AT5G27270 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 976 -0.58 0.31 -0.3
26 AT1G62830 LSD1-like 1 ARABIDOPSIS LYSINE-SPECIFIC
HISTONE DEMETHYLASE, ATSWP1,
LSD1-like 1, LYSINE-SPECIFIC
HISTONE DEMETHYLASE, SWP1		 -0.57 0.32 -0.34
27 AT5G28500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in
49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.57 0.31 -0.31
28 AT1G14340 RNA-binding (RRM/RBD/RNP motifs) family protein 0.57 0.32 -0.32
29 AT4G27050 F-box/RNI-like superfamily protein 0.57 0.32 -0.32
30 AT3G55170 Ribosomal L29 family protein -0.56 0.31 -0.33
31 AT1G62330 O-fucosyltransferase family protein -0.56 0.29 -0.33
32 AT5G16530 Auxin efflux carrier family protein PIN-FORMED 5 -0.55 0.29 -0.3
33 AT5G42280 Cysteine/Histidine-rich C1 domain family protein -0.55 0.33 -0.3
34 AT5G05890 UDP-Glycosyltransferase superfamily protein -0.55 0.32 -0.3
35 AT1G58150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: in 9 processes; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.55 0.33 -0.33
36 AT5G15920 structural maintenance of chromosomes 5 EMBRYO DEFECTIVE 2782, structural
maintenance of chromosomes 5		 -0.55 0.34 -0.32
37 AT4G13050 Acyl-ACP thioesterase -0.55 0.32 -0.32
38 AT1G63880 Disease resistance protein (TIR-NBS-LRR class) family -0.54 0.33 -0.32
39 AT5G35730 EXS (ERD1/XPR1/SYG1) family protein -0.54 0.32 -0.31
40 AT5G35450 Disease resistance protein (CC-NBS-LRR class) family -0.53 0.33 -0.31
41 AT1G51430 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits
to 13 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.53 0.3 -0.31
42 AT2G13100 Major facilitator superfamily protein glycerol-3-phosphate permease 5,
glycerol-3-phosphate permease 5		 0.53 0.3 -0.31
43 AT1G69720 heme oxygenase 3 heme oxygenase 3 0.52 0.34 -0.34
44 AT5G17250 Alkaline-phosphatase-like family protein -0.52 0.31 -0.3
45 AT5G17880 disease resistance protein (TIR-NBS-LRR class) constitutive shade-avoidance1 -0.52 0.31 -0.33
46 AT3G56720 unknown protein; Has 6239 Blast hits to 4635 proteins in
365 species: Archae - 6; Bacteria - 230; Metazoa - 3389;
Fungi - 659; Plants - 656; Viruses - 13; Other Eukaryotes -
1286 (source: NCBI BLink).		 0.52 0.31 -0.31
47 AT3G60640 Ubiquitin-like superfamily protein AUTOPHAGY 8G 0.52 0.31 -0.31
48 AT2G02480 AAA-type ATPase family protein STICHEL -0.52 0.29 -0.31
49 AT1G74380 xyloglucan xylosyltransferase 5 xyloglucan xylosyltransferase 5 -0.52 0.33 -0.33
50 AT1G66540 Cytochrome P450 superfamily protein -0.52 0.34 -0.28
51 AT2G31480 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G05894.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.51 0.32 -0.36
52 AT4G01130 GDSL-like Lipase/Acylhydrolase superfamily protein -0.51 0.3 -0.32
53 AT5G27110 Tetratricopeptide repeat (TPR)-like superfamily protein -0.51 0.31 -0.32
54 AT1G66650 Protein with RING/U-box and TRAF-like domains -0.51 0.31 -0.31
55 AT2G26110 Protein of unknown function (DUF761) 0.51 0.3 -0.29
56 AT4G12840 Protein of unknown function (DUF707) -0.51 0.32 -0.3
57 AT5G28030 L-cysteine desulfhydrase 1 L-cysteine desulfhydrase 1 0.51 0.3 -0.32
58 AT1G64300 Protein kinase family protein -0.51 0.3 -0.32
59 AT1G62360 KNOX/ELK homeobox transcription factor BUMBERSHOOT, BUMBERSHOOT 1,
SHOOTLESS, SHOOT MERISTEMLESS,
WALDMEISTER, WALDMEISTER 1		 -0.5 0.3 -0.31
60 AT1G61500 S-locus lectin protein kinase family protein -0.5 0.34 -0.32
61 AT5G17890 DA1-related protein 4 CHILLING SENSITIVE 3, DA1-related
protein 4		 -0.5 0.32 -0.32
62 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.5 0.31 -0.3
63 AT1G61730 DNA-binding storekeeper protein-related transcriptional
regulator		 -0.5 0.31 -0.32
64 AT4G09680 conserved telomere maintenance component 1 ATCTC1, conserved telomere
maintenance component 1		 -0.5 0.3 -0.3
65 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 -0.5 0.3 -0.32
66 AT5G37290 ARM repeat superfamily protein -0.5 0.32 -0.31
67 AT5G37630 ARM repeat superfamily protein EMBRYO DEFECTIVE 2656 -0.5 0.31 -0.32
68 AT1G64270 transposable element gene -0.5 0.29 -0.33
69 AT1G64490 DEK, chromatin associated protein -0.5 0.31 -0.31
70 AT5G20450 CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710);
BEST Arabidopsis thaliana protein match is: Myosin family
protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast
hits to 1458 proteins in 355 species: Archae - 28; Bacteria
- 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses -
3; Other Eukaryotes - 412 (source: NCBI BLink).		 -0.5 0.31 -0.31
71 AT4G36380 Cytochrome P450 superfamily protein ROTUNDIFOLIA 3 0.5 0.31 -0.32
72 AT5G18840 Major facilitator superfamily protein 0.5 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
73 C0253 Threonic acid-1,4-lactone D,L-Threonic acid-1,4-lactone - - -0.82 0.49 -0.44
74 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine -0.8 0.49 -0.48 C0038
75 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		-0.78 0.45 -0.46 C0016
76 C0183 MST_3033.1 - - - -0.71 0.42 -0.45
77 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.69 0.43 -0.42 C0033
78 C0037 5-Methylsulfinyl-n-pentylglucosinolate - 5-Methylsulfinylpentyl glucosinolate glucosinolate biosynthesis from trihomomethionine -0.58 0.32 -0.32 C0037