AT3G51880 : AtHMGB1
Query Information
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AGICode AT3G51880
Description high mobility group B1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 1 0.3 -0.33
2 AT2G44150 histone-lysine N-methyltransferase ASHH3 histone-lysine N-methyltransferase
ASHH3, SET DOMAIN-CONTAINING
PROTEIN 7		 0.77 0.29 -0.32
3 AT1G53790 F-box and associated interaction domains-containing protein -0.77 0.3 -0.32
4 AT3G43630 Vacuolar iron transporter (VIT) family protein -0.75 0.33 -0.33
5 AT5G08120 movement protein binding protein 2C movement protein binding protein
2C		 0.74 0.31 -0.32
6 AT1G52420 UDP-Glycosyltransferase superfamily protein -0.73 0.33 -0.31
7 AT1G06960 RNA-binding (RRM/RBD/RNP motifs) family protein 0.7 0.31 -0.32
8 AT1G43810 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.7 0.31 -0.31
9 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.31 -0.3
10 AT5G57410 Afadin/alpha-actinin-binding protein 0.7 0.3 -0.31
11 AT2G45290 Transketolase -0.7 0.32 -0.31
12 AT5G25840 Protein of unknown function (DUF1677) 0.69 0.34 -0.32
13 AT1G31910 GHMP kinase family protein -0.69 0.32 -0.31
14 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 -0.69 0.32 -0.31
15 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.3 -0.31
16 AT3G28720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in
85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi
- 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732
(source: NCBI BLink).		 -0.69 0.3 -0.31
17 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.69 0.33 -0.34
18 AT3G09980 Family of unknown function (DUF662) 0.68 0.31 -0.32
19 AT1G74490 Protein kinase superfamily protein -0.68 0.31 -0.31
20 AT1G17410 Nucleoside diphosphate kinase family protein 0.68 0.33 -0.31
21 AT2G14260 proline iminopeptidase proline iminopeptidase 0.68 0.31 -0.31
22 AT1G74820 RmlC-like cupins superfamily protein -0.68 0.31 -0.31
23 AT3G60390 homeobox-leucine zipper protein 3 homeobox-leucine zipper protein 3 0.68 0.31 -0.32
24 AT5G24280 gamma-irradiation and mitomycin c induced 1 GAMMA-IRRADIATION AND MITOMYCIN C
INDUCED 1		 -0.68 0.31 -0.31
25 AT3G04605 transposable element gene -0.68 0.32 -0.32
26 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 0.68 0.3 -0.33
27 AT3G23800 selenium-binding protein 3 selenium-binding protein 3 -0.67 0.32 -0.31
28 AT5G12050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.66 0.31 -0.31
29 AT4G33900 Galactose oxidase/kelch repeat superfamily protein 0.66 0.3 -0.32
30 AT2G26970 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.66 0.33 -0.3
31 AT5G24910 cytochrome P450, family 714, subfamily A, polypeptide 1 cytochrome P450, family 714,
subfamily A, polypeptide 1,
EUI-like p450 A1		 -0.66 0.31 -0.3
32 AT2G31450 DNA glycosylase superfamily protein ATNTH1 0.66 0.32 -0.31
33 AT5G41860 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.66 0.33 -0.31
34 AT5G67370 Protein of unknown function (DUF1230) 0.66 0.33 -0.31
35 AT3G11460 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.31 -0.31
36 AT3G62160 HXXXD-type acyl-transferase family protein 0.65 0.31 -0.32
37 AT1G05550 Protein of unknown function (DUF295) -0.65 0.3 -0.31
38 AT5G45180 Flavin-binding monooxygenase family protein -0.65 0.3 -0.32
39 AT3G56630 cytochrome P450, family 94, subfamily D, polypeptide 2 cytochrome P450, family 94,
subfamily D, polypeptide 2		 -0.65 0.34 -0.31
40 AT1G59650 Protein of unknown function (DUF1336) CW14 -0.65 0.31 -0.29
41 AT1G63590 Receptor-like protein kinase-related family protein 0.65 0.32 -0.3
42 AT5G24130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: petal, leaf whorl, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.64 0.3 -0.32
43 AT5G49260 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.64 0.31 -0.31
44 AT4G08310 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Histone chaperone domain CHZ (InterPro:IPR019098); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins
in 1618 species: Archae - 142; Bacteria - 4400; Metazoa -
24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other
Eukaryotes - 15245 (source: NCBI BLink).		 0.64 0.31 -0.33
45 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 0.64 0.32 -0.32
46 AT5G01310 APRATAXIN-like APRATAXIN-like -0.64 0.32 -0.33
47 AT1G04120 multidrug resistance-associated protein 5 ATP-binding cassette C5,
Arabidopsis thaliana ATP-binding
cassette C5, multidrug
resistance-associated protein 5,
MULTIDRUG RESISTANCE PROTEIN 5,
multidrug resistance-associated
protein 5		 -0.63 0.3 -0.33
48 AT4G22770 AT hook motif DNA-binding family protein -0.63 0.3 -0.32
49 AT1G79780 Uncharacterised protein family (UPF0497) -0.63 0.33 -0.32
50 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 -0.63 0.29 -0.31
51 AT3G56430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, vacuole; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G40800.1); Has 3121 Blast hits to 1477 proteins in
196 species: Archae - 12; Bacteria - 170; Metazoa - 996;
Fungi - 324; Plants - 132; Viruses - 59; Other Eukaryotes -
1428 (source: NCBI BLink).		 -0.63 0.3 -0.3
52 AT3G05960 sugar transporter 6 SUGAR TRANSPORTER 6, sugar
transporter 6		 -0.63 0.34 -0.33
53 AT2G19110 heavy metal atpase 4 ARABIDOPSIS HEAVY METAL ATPASE 4,
heavy metal atpase 4		 -0.63 0.32 -0.32
54 AT2G23470 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 4 0.63 0.31 -0.31
55 AT4G15200 formin 3 formin 3, formin 3 0.63 0.34 -0.32
56 AT2G36710 Pectin lyase-like superfamily protein 0.62 0.34 -0.34
57 AT4G18720 Transcription factor IIS protein 0.62 0.29 -0.36
58 AT5G18580 tonneau 2 (TON2) EMBRYO DEFECTIVE 40, FASS 1, FASS
2, FS1, GORDO, TONNEAU 2		 0.62 0.32 -0.29
59 AT4G04560 transposable element gene 0.62 0.32 -0.34
60 AT3G09090 defective in exine formation protein (DEX1) DEFECTIVE IN EXINE FORMATION 1 -0.62 0.32 -0.32
61 AT1G05070 Protein of unknown function (DUF1068) 0.62 0.3 -0.31
62 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 -0.62 0.31 -0.3
63 AT2G03450 purple acid phosphatase 9 PURPLE ACID PHOSPHATASE 9, purple
acid phosphatase 9		 -0.62 0.33 -0.29
64 AT5G13280 aspartate kinase 1 ASPARTATE KINASE, aspartate kinase
1, ASPARTATE KINASE 1		 -0.61 0.32 -0.32
65 AT5G37420 Family of unknown function (DUF577) -0.61 0.32 -0.31
66 AT5G35700 fimbrin-like protein 2 fimbrin-like protein 2, FIMBRIN5 -0.61 0.3 -0.33
67 AT1G62810 Copper amine oxidase family protein -0.61 0.31 -0.3
68 AT5G47620 RNA-binding (RRM/RBD/RNP motifs) family protein -0.61 0.34 -0.31
69 AT2G27390 proline-rich family protein -0.61 0.28 -0.3
70 AT4G26640 WRKY family transcription factor family protein AtWRKY20, WRKY20 0.61 0.31 -0.31
71 AT4G03750 transposable element gene -0.61 0.31 -0.3
72 AT1G17040 SH2 domain protein A ARABIDOPSIS THALIANA SH2 DOMAIN
PROTEIN A, SH2 domain protein A,
STAT-TYPE LINKER-SH2 DOMAIN FACTOR
A		 0.61 0.29 -0.32
73 AT5G64690 neurofilament triplet H protein-related -0.61 0.31 -0.31
74 AT5G57140 purple acid phosphatase 28 PURPLE ACID PHOSPHATASE 28, purple
acid phosphatase 28		 0.61 0.3 -0.32
75 AT3G21720 isocitrate lyase isocitrate lyase -0.61 0.31 -0.3
76 AT5G06480 Immunoglobulin E-set superfamily protein 0.6 0.31 -0.31
77 AT3G05390 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF248, methyltransferase putative
(InterPro:IPR004159); BEST Arabidopsis thaliana protein
match is: S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein (TAIR:AT4G01240.1);
Has 507 Blast hits to 498 proteins in 33 species: Archae -
4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.6 0.31 -0.34
78 AT1G03280 Transcription factor TFIIE, alpha subunit -0.6 0.3 -0.31
79 AT3G03590 SWIB/MDM2 domain superfamily protein 0.6 0.3 -0.31
80 AT1G67370 DNA-binding HORMA family protein ASYNAPTIC 1, ATASY1 0.6 0.31 -0.32
81 AT3G53820 C2H2 and C2HC zinc fingers superfamily protein -0.6 0.31 -0.31
82 AT5G43710 Glycosyl hydrolase family 47 protein -0.6 0.31 -0.3
83 AT2G18610 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.32 -0.32
84 AT3G60830 actin-related protein 7 ARP7, actin-related protein 7,
actin-related protein 7		 0.6 0.31 -0.3
85 AT5G56140 RNA-binding KH domain-containing protein 0.6 0.32 -0.33
86 AT2G10760 transposable element gene -0.59 0.29 -0.32
87 AT1G58410 Disease resistance protein (CC-NBS-LRR class) family -0.59 0.34 -0.34
88 AT5G58270 ABC transporter of the mitochondrion 3 ATP-binding cassette B25,
ARABIDOPSIS THALIANA ABC
TRANSPORTER OF THE MITOCHONDRION
3, ABC transporter of the
mitochondrion 3, STARIK 1		 -0.59 0.31 -0.31
89 AT2G11150 transposable element gene -0.59 0.34 -0.31
90 AT1G75930 extracellular lipase 6 extracellular lipase 6 0.59 0.31 -0.32
91 AT1G50760 Aminotransferase-like, plant mobile domain family protein -0.59 0.3 -0.32
92 AT5G25570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.59 0.32 -0.33
93 AT5G61140 U5 small nuclear ribonucleoprotein helicase -0.59 0.32 -0.32
94 AT2G05400 Ubiquitin-specific protease family C19-related protein 0.59 0.32 -0.34
95 AT2G01930 basic pentacysteine1 BASIC PENTACYSTEINE1, BBR, basic
pentacysteine1		 0.59 0.29 -0.3
96 AT2G46940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits
to 141 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.34 -0.32
97 AT1G77540 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.59 0.32 -0.3
98 AT5G15400 U-box domain-containing protein -0.59 0.33 -0.31
99 AT4G16570 protein arginine methyltransferase 7 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 7,
protein arginine methyltransferase
7		 -0.59 0.33 -0.3
100 AT1G51700 DOF zinc finger protein 1 DOF zinc finger protein 1, DOF
zinc finger protein 1		 0.59 0.31 -0.33
101 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein 0.59 0.31 -0.33
102 AT4G28130 diacylglycerol kinase 6 ATDGK6, diacylglycerol kinase 6 -0.58 0.33 -0.31
103 AT4G11160 Translation initiation factor 2, small GTP-binding protein -0.58 0.3 -0.31
104 AT1G55700 Cysteine/Histidine-rich C1 domain family protein -0.58 0.32 -0.31
105 AT4G15400 HXXXD-type acyl-transferase family protein -0.58 0.3 -0.32
106 AT4G07350 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G40129.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.58 0.31 -0.32
107 AT1G47680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G47700.1); Has 3 Blast
hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.31 -0.32
108 AT4G15300 cytochrome P450, family 702, subfamily A, polypeptide 2 cytochrome P450, family 702,
subfamily A, polypeptide 2		 -0.58 0.32 -0.31
109 AT4G32920 glycine-rich protein -0.58 0.34 -0.33
110 AT1G57600 MBOAT (membrane bound O-acyl transferase) family protein -0.58 0.3 -0.31
111 AT4G17000 unknown protein; Has 2862 Blast hits to 2331 proteins in
349 species: Archae - 6; Bacteria - 408; Metazoa - 833;
Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes -
1251 (source: NCBI BLink).		 0.58 0.32 -0.32
112 AT1G18030 Protein phosphatase 2C family protein 0.58 0.32 -0.33
113 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4		 -0.58 0.31 -0.32
114 AT2G14810 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.57 0.33 -0.33
115 AT5G02840 LHY/CCA1-like 1 LHY/CCA1-like 1 0.57 0.31 -0.31
116 AT4G38190 cellulose synthase like D4 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE-LIKE D4, cellulose
synthase like D4		 -0.57 0.33 -0.3
117 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 -0.57 0.31 -0.32
118 AT1G34080 transposable element gene -0.57 0.32 -0.3
119 AT1G31440 SH3 domain-containing protein 0.57 0.33 -0.33
120 AT4G08450 Disease resistance protein (TIR-NBS-LRR class) family 0.57 0.31 -0.31
121 AT1G31760 SWIB/MDM2 domain superfamily protein 0.57 0.32 -0.33
122 AT5G58010 LJRHL1-like 3 LJRHL1-like 3 -0.57 0.34 -0.32
123 AT2G02830 transposable element gene -0.57 0.3 -0.31
124 AT2G18960 H(+)-ATPase 1 H(+)-ATPase 1, H(+)-ATPase 1, OPEN
STOMATA 2, PLASMA MEMBRANE PROTON
ATPASE		 -0.57 0.3 -0.3
125 AT1G43870 transposable element gene 0.57 0.31 -0.31
126 AT1G22420 hydroxyproline-rich glycoprotein family protein -0.57 0.32 -0.36