AGICode | AT5G25900 |
Description | GA requiring 3 |
Gene Code | Description / Information | Gene name | Correlation | link | ||||
---|---|---|---|---|---|---|---|---|
pcc | 2.5% | 97.5% | PPI | |||||
1 | AT5G25900 | GA requiring 3 | ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, CYTOCHROME P450 701 A3, GA requiring 3 |
1 | 0.33 | -0.3 | ||
2 | AT2G30500 | Kinase interacting (KIP1-like) family protein | 0.73 | 0.3 | -0.32 | |||
3 | AT2G18360 | alpha/beta-Hydrolases superfamily protein | 0.72 | 0.31 | -0.34 | |||
4 | AT2G26830 | Protein kinase superfamily protein | embryo defective 1187 | -0.72 | 0.31 | -0.3 | ||
5 | AT1G17130 | Family of unknown function (DUF572) | -0.7 | 0.32 | -0.31 | |||
6 | AT1G21920 | Histone H3 K4-specific methyltransferase SET7/9 family protein |
0.69 | 0.31 | -0.3 | |||
7 | AT1G71750 | Hypoxanthine-guanine phosphoribosyltransferase | Hypoxanthine-guanine phosphoribosyltransferase |
-0.69 | 0.31 | -0.33 | ||
8 | AT3G12500 | basic chitinase | basic chitinase, B-CHI, CHI-B, basic chitinase, PATHOGENESIS-RELATED 3, PATHOGENESIS-RELATED 3 |
0.68 | 0.31 | -0.32 | ||
9 | AT1G23120 | Polyketide cyclase/dehydrase and lipid transport superfamily protein |
0.68 | 0.32 | -0.34 | |||
10 | AT3G17130 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
-0.68 | 0.32 | -0.29 | |||
11 | AT5G62360 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
-0.68 | 0.33 | -0.33 | |||
12 | AT2G22660 | Protein of unknown function (duplicated DUF1399) | 0.68 | 0.33 | -0.32 | |||
13 | AT1G18660 | zinc finger (C3HC4-type RING finger) family protein | -0.67 | 0.31 | -0.33 | |||
14 | AT3G14790 | rhamnose biosynthesis 3 | ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 |
-0.66 | 0.32 | -0.29 | ||
15 | AT4G33650 | dynamin-related protein 3A | ARABIDOPSIS DYNAMIN-LIKE 2, ABERRANT PEROXISOME MORPHOLOGY 1, dynamin-related protein 3A |
-0.66 | 0.32 | -0.31 | ||
16 | AT2G31370 | Basic-leucine zipper (bZIP) transcription factor family protein |
-0.66 | 0.32 | -0.32 | |||
17 | AT4G32190 | Myosin heavy chain-related protein | -0.66 | 0.32 | -0.32 | |||
18 | AT1G78170 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.65 | 0.3 | -0.32 | |||
19 | AT1G52240 | RHO guanyl-nucleotide exchange factor 11 | ATROPGEF11, phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 |
0.65 | 0.34 | -0.33 | ||
20 | AT2G04940 | scramblase-related | 0.65 | 0.31 | -0.3 | |||
21 | AT4G27430 | COP1-interacting protein 7 | COP1-interacting protein 7 | -0.64 | 0.33 | -0.29 | ||
22 | AT2G31380 | salt tolerance homologue | salt tolerance homologue | -0.64 | 0.32 | -0.32 | ||
23 | AT3G49720 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.64 | 0.31 | -0.35 | |||
24 | AT4G15480 | UDP-Glycosyltransferase superfamily protein | UGT84A1 | -0.64 | 0.32 | -0.31 | ||
25 | AT1G14580 | C2H2-like zinc finger protein | -0.64 | 0.31 | -0.33 | |||
26 | AT3G44450 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.64 | 0.32 | -0.29 | |||
27 | AT1G13560 | aminoalcoholphosphotransferase 1 | aminoalcoholphosphotransferase 1, ATAAPT1 |
-0.63 | 0.33 | -0.29 | ||
28 | AT1G14560 | Mitochondrial substrate carrier family protein | -0.63 | 0.31 | -0.29 | |||
29 | AT4G12730 | FASCICLIN-like arabinogalactan 2 | FASCICLIN-like arabinogalactan 2 | -0.63 | 0.31 | -0.33 | ||
30 | AT1G32120 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). |
0.63 | 0.31 | -0.32 | |||
31 | AT5G18440 | CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). |
AtNUFIP, nuclear FMRP-interacting protein |
-0.62 | 0.35 | -0.31 | ||
32 | AT2G35700 | ERF family protein 38 | ERF FAMILY PROTEIN 38, ERF family protein 38 |
-0.62 | 0.31 | -0.32 | ||
33 | AT1G08750 | Peptidase C13 family | -0.62 | 0.3 | -0.31 | |||
34 | AT5G09870 | cellulose synthase 5 | cellulose synthase 5 | -0.62 | 0.34 | -0.32 | ||
35 | AT2G21320 | B-box zinc finger family protein | -0.62 | 0.3 | -0.29 | |||
36 | AT1G10290 | dynamin-like protein 6 | dynamin-like protein 6, DYNAMIN-RELATED PROTEIN 2A |
-0.61 | 0.3 | -0.32 | ||
37 | AT2G34040 | Apoptosis inhibitory protein 5 (API5) | -0.61 | 0.31 | -0.34 | |||
38 | AT3G19340 | Protein of unknown function (DUF3754) | -0.61 | 0.33 | -0.31 | |||
39 | AT2G30980 | SHAGGY-related protein kinase dZeta | SHAGGY-related protein kinase dZeta, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-LIKE PROTEIN KINASE 23, BIN2-LIKE 1, SHAGGY-related protein kinase dZeta |
-0.61 | 0.31 | -0.31 | ||
40 | AT5G36910 | thionin 2.2 | thionin 2.2 | -0.61 | 0.31 | -0.31 | ||
41 | AT3G45330 | Concanavalin A-like lectin protein kinase family protein | -0.61 | 0.32 | -0.31 | |||
42 | AT5G23480 | SWIB/MDM2 domain;Plus-3;GYF | -0.61 | 0.33 | -0.31 | |||
43 | AT3G17900 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). |
-0.61 | 0.32 | -0.32 | |||
44 | AT1G70290 | trehalose-6-phosphatase synthase S8 | ATTPS8, ATTPSC, trehalose-6-phosphatase synthase S8 |
0.61 | 0.31 | -0.31 | ||
45 | AT3G59360 | UDP-galactose transporter 6 | UDP-GALACTOSE TRANSPORTER 6, UDP-galactose transporter 6 |
-0.61 | 0.31 | -0.34 | ||
46 | AT1G04800 | glycine-rich protein | -0.6 | 0.28 | -0.3 | |||
47 | AT2G42440 | Lateral organ boundaries (LOB) domain family protein | 0.6 | 0.32 | -0.32 | |||
48 | AT5G14760 | L-aspartate oxidase | L-aspartate oxidase | -0.6 | 0.31 | -0.3 | ||
49 | AT2G34585 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.6 | 0.33 | -0.3 | |||
50 | AT1G31870 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species: Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source: NCBI BLink). |
-0.6 | 0.33 | -0.28 | |||
51 | AT1G35510 | O-fucosyltransferase family protein | -0.6 | 0.31 | -0.31 | |||
52 | AT5G64600 | O-fucosyltransferase family protein | -0.6 | 0.29 | -0.31 | |||
53 | AT4G37445 | BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
-0.6 | 0.33 | -0.32 | |||
54 | AT5G24300 | Glycogen/starch synthases, ADP-glucose type | STARCH SYNTHASE 1, starch synthase 1 |
-0.6 | 0.31 | -0.32 | ||
55 | AT3G24140 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
FAMA | -0.59 | 0.31 | -0.3 | ||
56 | AT1G43640 | tubby like protein 5 | tubby like protein 5, tubby like protein 5 |
-0.59 | 0.32 | -0.32 | ||
57 | AT4G04370 | Tetratricopeptide repeat (TPR)-like superfamily protein | -0.59 | 0.32 | -0.33 | |||
58 | AT1G74810 | HCO3- transporter family | BOR5 | -0.59 | 0.31 | -0.31 | ||
59 | AT3G17609 | HY5-homolog | HY5-homolog | -0.59 | 0.29 | -0.31 | ||
60 | AT3G19100 | Protein kinase superfamily protein | 0.59 | 0.32 | -0.31 | |||
61 | AT2G16860 | GCIP-interacting family protein | -0.59 | 0.31 | -0.32 | |||
62 | AT2G16365 | F-box family protein | -0.59 | 0.32 | -0.32 | |||
63 | AT1G64330 | myosin heavy chain-related | -0.59 | 0.35 | -0.33 | |||
64 | AT3G16850 | Pectin lyase-like superfamily protein | -0.59 | 0.31 | -0.32 | |||
65 | AT3G09360 | Cyclin/Brf1-like TBP-binding protein | -0.59 | 0.31 | -0.31 | |||
66 | AT5G18680 | tubby like protein 11 | tubby like protein 11, tubby like protein 11 |
-0.59 | 0.31 | -0.32 | ||
67 | AT1G13020 | eukaryotic initiation factor 4B2 | eukaryotic initiation factor 4B2 | -0.59 | 0.34 | -0.31 | ||
68 | AT3G07080 | EamA-like transporter family | -0.59 | 0.3 | -0.31 | |||
69 | AT1G06710 | Tetratricopeptide repeat (TPR)-like superfamily protein | -0.58 | 0.32 | -0.31 | |||
70 | AT1G30530 | UDP-glucosyl transferase 78D1 | UDP-glucosyl transferase 78D1 | -0.58 | 0.31 | -0.31 | ||
71 | AT2G31360 | 16:0delta9 desaturase 2 | 16:0delta9 desaturase 2, 16:0delta9 desaturase 2 |
-0.58 | 0.29 | -0.31 | ||
72 | AT3G52550 | BEST Arabidopsis thaliana protein match is: ovate family protein 18 (TAIR:AT3G52540.1); Has 5496 Blast hits to 1338 proteins in 151 species: Archae - 0; Bacteria - 23; Metazoa - 3754; Fungi - 379; Plants - 301; Viruses - 154; Other Eukaryotes - 885 (source: NCBI BLink). |
-0.58 | 0.33 | -0.32 | |||
73 | AT3G16100 | RAB GTPase homolog G3C | ATRAB7D, RAB GTPase homolog G3C, RAB GTPase homolog G3C |
-0.58 | 0.31 | -0.32 | ||
74 | AT2G28380 | dsRNA-binding protein 2 | dsRNA-binding protein 2 | -0.58 | 0.3 | -0.31 | ||
75 | AT5G24610 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
0.58 | 0.28 | -0.3 | |||
76 | AT5G05550 | sequence-specific DNA binding transcription factors | 0.58 | 0.32 | -0.3 | |||
77 | AT5G03390 | Protein of unknown function (DUF295) | -0.57 | 0.3 | -0.31 | |||
78 | AT1G28690 | Tetratricopeptide repeat (TPR)-like superfamily protein | -0.57 | 0.33 | -0.33 | |||
79 | AT5G38890 | Nucleic acid-binding, OB-fold-like protein | -0.57 | 0.34 | -0.33 | |||
80 | AT1G76240 | Arabidopsis protein of unknown function (DUF241) | -0.57 | 0.3 | -0.33 | |||
81 | AT5G65160 | tetratricopeptide repeat (TPR)-containing protein | tetratricopeptide repeat 14 | 0.57 | 0.31 | -0.31 | ||
82 | AT4G17090 | chloroplast beta-amylase | BETA-AMYLASE 3, BETA-AMYLASE 8, chloroplast beta-amylase |
-0.57 | 0.32 | -0.3 | ||
83 | AT1G66460 | Protein kinase superfamily protein | -0.57 | 0.29 | -0.32 | |||
84 | AT5G61060 | histone deacetylase 5 | ATHDA5, histone deacetylase 5, HDA5 |
0.57 | 0.31 | -0.31 | ||
85 | AT1G20720 | RAD3-like DNA-binding helicase protein | -0.57 | 0.31 | -0.35 | |||
86 | AT4G29610 | Cytidine/deoxycytidylate deaminase family protein | -0.57 | 0.32 | -0.27 | |||
87 | AT3G62330 | Zinc knuckle (CCHC-type) family protein | 0.57 | 0.34 | -0.32 | |||
88 | AT4G03080 | BRI1 suppressor 1 (BSU1)-like 1 | BRI1 suppressor 1 (BSU1)-like 1 | -0.57 | 0.31 | -0.32 | ||
89 | AT5G26230 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
membrane-associated kinase regulator 1 |
-0.57 | 0.33 | -0.29 | ||
90 | AT2G21380 | Kinesin motor family protein | -0.57 | 0.32 | -0.3 | |||
91 | AT3G59800 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43795.2); Has 15361 Blast hits to 8061 proteins in 537 species: Archae - 2; Bacteria - 622; Metazoa - 7561; Fungi - 1246; Plants - 920; Viruses - 49; Other Eukaryotes - 4961 (source: NCBI BLink). |
-0.56 | 0.32 | -0.33 | |||
92 | AT3G05120 | alpha/beta-Hydrolases superfamily protein | GA INSENSITIVE DWARF1A, GA INSENSITIVE DWARF1A |
0.56 | 0.3 | -0.33 | ||
93 | AT2G38530 | lipid transfer protein 2 | cell growth defect factor-3, LP2, lipid transfer protein 2 |
0.56 | 0.32 | -0.34 | ||
94 | AT2G43160 | ENTH/VHS family protein | -0.56 | 0.3 | -0.32 | |||
95 | AT3G20370 | TRAF-like family protein | 0.56 | 0.32 | -0.34 | |||
96 | AT2G16500 | arginine decarboxylase 1 | arginine decarboxylase 1, ARGDC, ARGDC1, SPE1 |
-0.56 | 0.31 | -0.32 | ||
97 | AT1G73350 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 46 Blast hits to 46 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 3; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
-0.56 | 0.31 | -0.31 | |||
98 | AT1G28340 | receptor like protein 4 | receptor like protein 4, receptor like protein 4 |
-0.56 | 0.31 | -0.34 | ||
99 | AT4G14840 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22520.1); Has 1681 Blast hits to 1532 proteins in 283 species: Archae - 19; Bacteria - 179; Metazoa - 579; Fungi - 131; Plants - 223; Viruses - 5; Other Eukaryotes - 545 (source: NCBI BLink). |
0.56 | 0.31 | -0.32 | |||
100 | AT5G51180 | alpha/beta-Hydrolases superfamily protein | -0.56 | 0.31 | -0.33 | |||
101 | AT1G55150 | DEA(D/H)-box RNA helicase family protein | -0.56 | 0.31 | -0.31 | |||
102 | AT3G50860 | Clathrin adaptor complex small chain family protein | -0.56 | 0.34 | -0.32 | |||
103 | AT4G38210 | expansin A20 | ATEXP20, expansin A20, ATHEXP ALPHA 1.23, EXPANSIN 20, expansin A20 |
0.56 | 0.33 | -0.29 | ||
104 | AT1G54610 | Protein kinase superfamily protein | -0.56 | 0.31 | -0.32 | |||
105 | AT5G40960 | Protein of unknown function (DUF 3339) | 0.56 | 0.31 | -0.32 | |||
106 | AT5G18970 | AWPM-19-like family protein | -0.56 | 0.32 | -0.32 | |||
107 | AT3G53210 | nodulin MtN21 /EamA-like transporter family protein | 0.55 | 0.32 | -0.29 | |||
108 | AT3G21090 | ABC-2 type transporter family protein | ATP-binding cassette G15 | 0.55 | 0.33 | -0.3 | ||
109 | AT3G27420 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40600.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
0.55 | 0.33 | -0.34 | |||
110 | AT5G13700 | polyamine oxidase 1 | APAO, polyamine oxidase 1, polyamine oxidase 1 |
0.54 | 0.3 | -0.32 | ||
111 | AT4G24210 | F-box family protein | SLEEPY1 | 0.54 | 0.32 | -0.31 | ||
112 | AT5G62390 | BCL-2-associated athanogene 7 | BCL-2-associated athanogene 7, BCL-2-associated athanogene 7 |
0.53 | 0.29 | -0.29 | ||
113 | AT5G03860 | malate synthase | malate synthase | 0.53 | 0.32 | -0.3 | ||
114 | AT5G42840 | Cysteine/Histidine-rich C1 domain family protein | 0.52 | 0.31 | -0.31 | |||
115 | AT1G15300 | transposable element gene | 0.51 | 0.32 | -0.32 | |||
116 | AT3G48920 | myb domain protein 45 | myb domain protein 45, myb domain protein 45 |
0.51 | 0.32 | -0.29 |
CID | Metabolite name | Pathway Information | Correlation | link | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Compound name | Stereochemistry | Aracyc name | pcc | 2.5% | 97.5% | PPI | ||||
117 | C0188 | Nicotine | (-)-Nicotine | Nicotine | - | 0.71 | 0.44 | -0.48 | ||
118 | C0221 | Quercetin-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside | Quercetin-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside | - | quercetin glucoside biosynthesis (Arabidopsis) | 0.63 | 0.42 | -0.46 |