AT5G66540 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT5G66540
Description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G66540 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: cytosol, nucleolus, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s: U3 small
nucleolar ribonucleoprotein complex, subunit Mpp10p
(InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 1 0.31 -0.32
2 AT1G79150 binding 0.9 0.32 -0.32
3 AT1G56110 homolog of nucleolar protein NOP56 homolog of nucleolar protein NOP56 0.88 0.33 -0.32
4 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.84 0.32 -0.31
5 AT3G10530 Transducin/WD40 repeat-like superfamily protein 0.84 0.3 -0.34
6 AT5G55920 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 OLIGOCELLULA 2 0.84 0.32 -0.3
7 AT3G11964 RNA binding;RNA binding 0.84 0.33 -0.3
8 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylases 0.82 0.31 -0.34
9 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.82 0.35 -0.31
10 AT3G57000 nucleolar essential protein-related 0.81 0.29 -0.32
11 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.81 0.34 -0.32
12 AT1G30960 GTP-binding family protein 0.81 0.3 -0.3
13 AT2G40430 CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687),
Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has
709 Blast hits to 643 proteins in 201 species: Archae - 0;
Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45;
Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).		 0.8 0.34 -0.29
14 AT3G15460 Ribosomal RNA processing Brix domain protein 0.8 0.32 -0.34
15 AT1G32440 plastidial pyruvate kinase 3 plastidial pyruvate kinase 3 0.8 0.32 -0.31
16 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.8 0.31 -0.33
17 AT4G02400 U3 ribonucleoprotein (Utp) family protein 0.8 0.32 -0.3
18 AT1G69250 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.8 0.3 -0.29
19 AT3G55510 Noc2p family REBELOTE 0.8 0.3 -0.31
20 AT1G52930 Ribosomal RNA processing Brix domain protein 0.79 0.31 -0.31
21 AT5G05210 Surfeit locus protein 6 0.79 0.28 -0.31
22 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.79 0.31 -0.31
23 AT5G59980 Polymerase/histidinol phosphatase-like 0.79 0.33 -0.31
24 AT2G18220 Noc2p family 0.79 0.32 -0.32
25 AT3G21540 transducin family protein / WD-40 repeat family protein 0.79 0.33 -0.31
26 AT5G41190 CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)
Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA
nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.78 0.3 -0.29
27 AT2G34040 Apoptosis inhibitory protein 5 (API5) 0.78 0.32 -0.34
28 AT1G69070 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nop14-like protein (InterPro:IPR007276); Has 69842 Blast
hits to 35213 proteins in 1572 species: Archae - 363;
Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants -
2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI
BLink).		 0.78 0.32 -0.34
29 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.78 0.34 -0.29
30 AT5G38720 unknown protein; Has 13419 Blast hits to 9093 proteins in
698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949;
Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes
- 5779 (source: NCBI BLink).		 0.78 0.3 -0.31
31 AT1G10490 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.78 0.33 -0.31
32 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 0.78 0.32 -0.32
33 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.78 0.33 -0.3
34 AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative 0.78 0.3 -0.31
35 AT3G25230 rotamase FKBP 1 ATFKBP62, FK506 BINDING PROTEIN
62, rotamase FKBP 1		 0.77 0.32 -0.31
36 AT4G32720 La protein 1 La protein 1, La protein 1 0.77 0.35 -0.32
37 AT1G79490 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 2217 0.77 0.31 -0.28
38 AT1G54380 spliceosome protein-related 0.77 0.33 -0.31
39 AT2G15690 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.32 -0.29
40 AT1G13030 sphere organelles protein-related 0.76 0.31 -0.32
41 AT2G34357 ARM repeat superfamily protein 0.76 0.3 -0.31
42 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 0.76 0.34 -0.3
43 AT4G37090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.76 0.3 -0.33
44 AT3G58170 BET1P/SFT1P-like protein 14A ATBET11, ARABIDOPSIS THALIANA
BET1P/SFT1P-LIKE PROTEIN 14A,
BET11, BET1P/SFT1P-like protein
14A		 -0.76 0.3 -0.32
45 AT1G06670 nuclear DEIH-boxhelicase nuclear DEIH-boxhelicase 0.76 0.33 -0.32
46 AT4G29820 homolog of CFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF
CFIM-25, homolog of CFIM-25		 -0.75 0.3 -0.32
47 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.75 0.32 -0.29
48 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.75 0.28 -0.3
49 AT3G49990 unknown protein; Has 1524 Blast hits to 1298 proteins in
225 species: Archae - 9; Bacteria - 84; Metazoa - 474;
Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes -
658 (source: NCBI BLink).		 0.75 0.32 -0.32
50 AT3G03060 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.33 -0.31
51 AT1G77030 hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases		 0.74 0.3 -0.29
52 AT3G09720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.74 0.33 -0.29
53 AT1G06720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.74 0.3 -0.33
54 AT5G65760 Serine carboxypeptidase S28 family protein -0.73 0.31 -0.32
55 AT5G47455 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 8 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast
hits to 147 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.31 -0.31
56 AT5G12200 pyrimidine 2 pyrimidine 2 -0.73 0.31 -0.32
57 AT1G02820 Late embryogenesis abundant 3 (LEA3) family protein 0.73 0.3 -0.3
58 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 0.73 0.33 -0.31
59 AT5G18440 CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental
retardation-interacting protein 1, conserved region
(InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins
in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339;
Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes -
619 (source: NCBI BLink).		 AtNUFIP, nuclear FMRP-interacting
protein		 0.73 0.32 -0.31
60 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.73 0.31 -0.33
61 AT3G19440 Pseudouridine synthase family protein 0.73 0.3 -0.33
62 AT1G47960 cell wall / vacuolar inhibitor of fructosidase 1 CELL WALL / VACUOLAR INHIBITOR OF
FRUCTOSIDASE 1, cell wall /
vacuolar inhibitor of fructosidase
1		 -0.73 0.3 -0.31
63 AT3G07350 Protein of unknown function (DUF506) -0.73 0.31 -0.32
64 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.73 0.33 -0.33
65 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.7 0.31 -0.33
66 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.69 0.31 -0.31
67 AT1G51680 4-coumarate:CoA ligase 1 4-COUMARATE:COA LIGASE 1,
4-coumarate:CoA ligase 1,
ARABIDOPSIS THALIANA
4-COUMARATE:COA LIGASE 1		 -0.68 0.31 -0.31
68 AT1G70160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in
20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 -0.67 0.31 -0.33
69 AT2G44850 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0565
(InterPro:IPR018881); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G45380.1); Has 138 Blast
hits to 138 proteins in 53 species: Archae - 0; Bacteria -
0; Metazoa - 73; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 -0.67 0.31 -0.32
70 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family -0.66 0.34 -0.32
71 AT4G18975 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.34 -0.32
72 AT1G10150 Carbohydrate-binding protein -0.65 0.32 -0.3
73 AT3G27420 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G40600.1); Has 43 Blast hits
to 43 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 3; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.65 0.32 -0.3
74 AT2G18670 RING/U-box superfamily protein -0.65 0.29 -0.32
75 AT3G13672 TRAF-like superfamily protein -0.65 0.32 -0.31
76 AT5G40890 chloride channel A chloride channel A, ATCLCA,
chloride channel A, CHLORIDE
CHANNEL-A, CHLORIDE CHANNEL A		 -0.65 0.31 -0.3
77 AT1G55000 peptidoglycan-binding LysM domain-containing protein -0.65 0.32 -0.32
78 AT3G03150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast
hits to 39 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.32
79 AT4G01026 PYR1-like 7 PYR1-like 7, regulatory components
of ABA receptor 2		 -0.64 0.31 -0.3
80 AT3G62650 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G47485.1); Has 57 Blast hits
to 57 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.32 -0.32
81 AT5G66110 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 27		 -0.64 0.32 -0.34
82 AT2G25350 Phox (PX) domain-containing protein -0.64 0.32 -0.33
83 AT1G70290 trehalose-6-phosphatase synthase S8 ATTPS8, ATTPSC,
trehalose-6-phosphatase synthase
S8		 -0.64 0.3 -0.32
84 AT2G15960 unknown protein; Has 14 Blast hits to 14 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.33 -0.3
85 AT4G21350 plant U-box 8 B80, plant U-box 8 -0.63 0.29 -0.33
86 AT1G56280 drought-induced 19 drought-induced 19,
drought-induced 19		 -0.63 0.3 -0.32
87 AT3G26510 Octicosapeptide/Phox/Bem1p family protein -0.63 0.32 -0.31
88 AT5G63800 Glycosyl hydrolase family 35 protein beta-galactosidase 6,
MUCILAGE-MODIFIED 2		 -0.62 0.32 -0.3
89 AT3G44950 glycine-rich protein -0.61 0.29 -0.31
90 AT1G54680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in
57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi -
0; Plants - 127; Viruses - 0; Other Eukaryotes - 14
(source: NCBI BLink).		 -0.61 0.29 -0.33
91 AT3G14100 RNA-binding (RRM/RBD/RNP motifs) family protein -0.61 0.29 -0.34