AT5G64580 : EMBRYO DEFECTIVE 3144
Query Information
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AGICode AT5G64580
Description AAA-type ATPase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 1 0.32 -0.33
2 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.93 0.29 -0.35
3 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.93 0.31 -0.31
4 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.93 0.31 -0.34
5 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.93 0.32 -0.31
6 AT3G21300 RNA methyltransferase family protein 0.92 0.32 -0.3
7 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.92 0.32 -0.32
8 AT2G14880 SWIB/MDM2 domain superfamily protein 0.92 0.3 -0.32
9 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.91 0.32 -0.3
10 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.91 0.32 -0.31
11 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.91 0.32 -0.32
12 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.91 0.34 -0.31
13 AT4G36390 Methylthiotransferase 0.9 0.31 -0.32
14 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.9 0.34 -0.29
15 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.9 0.32 -0.28
16 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12		 0.9 0.32 -0.31
17 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.9 0.32 -0.31
18 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138		 0.9 0.32 -0.3
19 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.9 0.31 -0.33
20 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.9 0.3 -0.31
21 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.89 0.28 -0.3
22 AT3G51870 Mitochondrial substrate carrier family protein 0.89 0.31 -0.3
23 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.89 0.34 -0.32
24 AT2G24060 Translation initiation factor 3 protein 0.89 0.31 -0.33
25 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.89 0.31 -0.3
26 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.89 0.32 -0.33
27 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.89 0.33 -0.34
28 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.89 0.34 -0.33
29 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.89 0.32 -0.3
30 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.88 0.32 -0.33
31 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.88 0.33 -0.3
32 AT4G19710 aspartate kinase-homoserine dehydrogenase ii ASPARTATE KINASE-HOMOSERINE
DEHYDROGENASE, aspartate
kinase-homoserine dehydrogenase ii		 0.88 0.31 -0.32
33 AT1G56050 GTP-binding protein-related 0.87 0.29 -0.32
34 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.87 0.34 -0.32
35 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.87 0.31 -0.31
36 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.87 0.33 -0.31
37 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.87 0.3 -0.29
38 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.87 0.34 -0.31
39 AT3G02450 cell division protein ftsH, putative 0.87 0.31 -0.31
40 AT1G70200 RNA-binding (RRM/RBD/RNP motifs) family protein 0.87 0.32 -0.33
41 AT5G63050 embryo defective 2759 embryo defective 2759 0.87 0.29 -0.34
42 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.86 0.33 -0.3
43 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.86 0.3 -0.34
44 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.86 0.32 -0.32
45 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.86 0.31 -0.33
46 AT2G28000 chaperonin-60alpha CHLOROPLAST CHAPERONIN 60ALPHA,
chaperonin-60alpha,
chaperonin-60alpha1, SCHLEPPERLESS		 0.86 0.31 -0.31
47 AT4G00370 Major facilitator superfamily protein ANTR2, anion transporter 2 0.86 0.32 -0.3
48 AT5G16715 ATP binding;valine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 embryo defective 2247 0.86 0.31 -0.32
49 AT1G63680 acid-amino acid ligases;ligases;ATP binding;ATP
binding;ligases		 ALBINO OR PALE-GREEN 13, ATMURE,
MURE, PIGMENT DEFECTIVE EMBRYO 316		 0.86 0.32 -0.32
50 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.86 0.31 -0.3
51 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 0.86 0.32 -0.32
52 AT4G04890 protodermal factor 2 protodermal factor 2 0.85 0.33 -0.32
53 AT3G16290 AAA-type ATPase family protein embryo defective 2083 0.85 0.31 -0.34
54 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.85 0.32 -0.3
55 AT1G60230 Radical SAM superfamily protein 0.85 0.33 -0.32
56 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.85 0.31 -0.32
57 AT1G10522 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.84 0.3 -0.33
58 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 0.84 0.31 -0.32
59 AT2G31530 SecY protein transport family protein EMBRYO DEFECTIVE 2289, SECY
HOMOLOG 2		 0.84 0.28 -0.29
60 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.84 0.31 -0.33
61 AT2G17240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G24506.1); Has 2795
Blast hits to 943 proteins in 155 species: Archae - 0;
Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153;
Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).		 0.84 0.31 -0.3
62 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.84 0.28 -0.31
63 AT3G54090 fructokinase-like 1 fructokinase-like 1 0.84 0.3 -0.34
64 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.84 0.31 -0.31
65 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.84 0.29 -0.31
66 AT3G53460 chloroplast RNA-binding protein 29 chloroplast RNA-binding protein 29 0.84 0.32 -0.31
67 AT4G25990 CCT motif family protein CIL 0.84 0.31 -0.3
68 AT3G56330 N2,N2-dimethylguanosine tRNA methyltransferase 0.84 0.33 -0.33
69 AT5G12860 dicarboxylate transporter 1 dicarboxylate transporter 1 0.83 0.32 -0.31
70 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 0.83 0.31 -0.33
71 AT2G31840 Thioredoxin superfamily protein Mesophyll-cell RNAi Library line
7-like		 0.83 0.29 -0.31
72 AT2G41720 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2654 0.83 0.32 -0.31
73 AT1G50000 methyltransferases 0.83 0.34 -0.32
74 AT3G12080 GTP-binding family protein embryo defective 2738 0.83 0.32 -0.29
75 AT3G61780 embryo defective 1703 embryo defective 1703 0.83 0.3 -0.32
76 AT2G04270 RNAse E/G-like RNAse E/G-like 0.83 0.3 -0.31
77 AT1G80030 Molecular chaperone Hsp40/DnaJ family protein 0.83 0.3 -0.3
78 AT1G10910 Pentatricopeptide repeat (PPR) superfamily protein EMBRYO DEFECTIVE 3103 0.83 0.31 -0.29
79 AT1G06950 translocon at the inner envelope membrane of chloroplasts
110		 ARABIDOPSIS THALIANA TRANSLOCON AT
THE INNER ENVELOPE MEMBRANE OF
CHLOROPLASTS 110, translocon at
the inner envelope membrane of
chloroplasts 110		 0.83 0.3 -0.32
80 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.83 0.32 -0.32
81 AT4G30000 Dihydropterin pyrophosphokinase / Dihydropteroate synthase 0.83 0.33 -0.3
82 AT3G48500 Nucleic acid-binding, OB-fold-like protein PIGMENT DEFECTIVE 312, PLASTID
TRANSCRIPTIONALLY ACTIVE 10		 0.83 0.33 -0.29
83 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.81 0.32 -0.31
84 AT1G72680 cinnamyl-alcohol dehydrogenase CINNAMYL ALCOHOL DEHYDROGENASE 1,
cinnamyl-alcohol dehydrogenase		 -0.79 0.32 -0.29
85 AT5G59510 ROTUNDIFOLIA like 5 DEVIL 18, ROTUNDIFOLIA like 5 -0.78 0.32 -0.3
86 AT5G54080 homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase -0.78 0.29 -0.31
87 AT2G02390 glutathione S-transferase zeta 1 glutathione S-transferase zeta 1,
GLUTATHIONE S-TRANSFERASE 18,
glutathione S-transferase zeta 1		 -0.78 0.32 -0.31
88 AT5G06750 Protein phosphatase 2C family protein -0.78 0.32 -0.32
89 AT5G54840 Ras-related small GTP-binding family protein ATSGP1, SGP1 -0.78 0.3 -0.33
90 AT1G01720 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 2, ATAF1		 -0.76 0.28 -0.33
91 AT5G17650 glycine/proline-rich protein -0.76 0.34 -0.32
92 AT2G26230 uricase / urate oxidase / nodulin 35, putative -0.75 0.34 -0.32
93 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.75 0.3 -0.31
94 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.75 0.32 -0.33
95 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.74 0.34 -0.3
96 AT3G51130 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0183
(InterPro:IPR005373); Has 269 Blast hits to 265 proteins in
123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 -0.74 0.31 -0.3
97 AT2G43060 ILI1 binding bHLH 1 ILI1 binding bHLH 1 -0.73 0.34 -0.3
98 AT1G19230 Riboflavin synthase-like superfamily protein -0.73 0.33 -0.32
99 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.73 0.3 -0.32
100 AT1G77920 bZIP transcription factor family protein -0.72 0.31 -0.29
101 AT3G11100 sequence-specific DNA binding transcription factors -0.72 0.3 -0.32
102 AT3G50900 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits
to 45 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.32 -0.3
103 AT5G59140 BTB/POZ domain-containing protein -0.71 0.33 -0.31
104 AT5G62530 aldehyde dehydrogenase 12A1 aldehyde dehydrogenase 12A1,
ARABIDOPSIS THALIANA
DELTA1-PYRROLINE-5-CARBOXYLATE
DEHYDROGENASE,
DELTA1-PYRROLINE-5-CARBOXYLATE
DEHYDROGENASE		 -0.71 0.32 -0.31
105 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.71 0.3 -0.3
106 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.71 0.28 -0.32
107 AT4G39090 Papain family cysteine protease RESPONSIVE TO DEHYDRATION 19,
RESPONSIVE TO DEHYDRATION 19A		 -0.71 0.31 -0.31
108 AT1G06800 alpha/beta-Hydrolases superfamily protein phospholipase A I gamma 1 -0.71 0.3 -0.31
109 AT1G74590 glutathione S-transferase TAU 10 GLUTATHIONE S-TRANSFERASE TAU 10,
glutathione S-transferase TAU 10		 -0.71 0.31 -0.32
110 AT3G26460 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.71 0.3 -0.33
111 AT1G69410 eukaryotic elongation factor 5A-3 EUKARYOTIC ELONGATION FACTOR 5A-3,
eukaryotic elongation factor 5A-3		 -0.7 0.32 -0.32
112 AT2G47520 Integrase-type DNA-binding superfamily protein Arabidopsis thaliana ethylene
response factor 71, ethylene
response factor 71, HYPOXIA
RESPONSIVE ERF (ETHYLENE RESPONSE
FACTOR) 2		 -0.7 0.32 -0.31
113 AT1G55920 serine acetyltransferase 2;1 serine acetyltransferase 2;1,
SERINE ACETYLTRANSFERASE 1, SERINE
ACETYLTRANSFERASE 5, serine
acetyltransferase 2;1		 -0.7 0.3 -0.3
114 AT5G04750 F1F0-ATPase inhibitor protein, putative -0.7 0.32 -0.32
115 AT5G61640 peptidemethionine sulfoxide reductase 1 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE A1,
peptidemethionine sulfoxide
reductase 1		 -0.7 0.33 -0.31
116 AT2G36330 Uncharacterised protein family (UPF0497) -0.7 0.3 -0.32
117 AT5G67310 cytochrome P450, family 81, subfamily G, polypeptide 1 cytochrome P450, family 81,
subfamily G, polypeptide 1		 -0.7 0.29 -0.33
118 AT1G70530 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 cysteine-rich RLK (RECEPTOR-like
protein kinase) 3		 -0.7 0.29 -0.34
119 AT1G73500 MAP kinase kinase 9 ATMKK9, MAP kinase kinase 9 -0.69 0.32 -0.35
120 AT3G23600 alpha/beta-Hydrolases superfamily protein -0.69 0.33 -0.35
121 AT5G18170 glutamate dehydrogenase 1 glutamate dehydrogenase 1 -0.69 0.31 -0.31
122 AT3G62580 Late embryogenesis abundant protein (LEA) family protein -0.69 0.28 -0.31
123 AT1G22280 phytochrome-associated protein phosphatase type 2C phytochrome-associated protein
phosphatase type 2C		 -0.69 0.3 -0.3
124 AT5G10730 NAD(P)-binding Rossmann-fold superfamily protein -0.69 0.3 -0.33
125 AT4G35110 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.69 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
126 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.86 0.42 -0.45 C0133