AT5G64770 : root meristem growth factor 9
Query Information
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AGICode AT5G64770
Description Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G64770 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 9 1 0.31 -0.32
2 AT3G57520 seed imbibition 2 seed imbibition 2, raffinose
synthase 2, seed imbibition 2		 -0.85 0.33 -0.31
3 AT1G80160 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 7 -0.85 0.35 -0.33
4 AT2G47600 magnesium/proton exchanger magnesium/proton exchanger,
ATMHX1, magnesium/proton
exchanger, MAGNESIUM/PROTON
EXCHANGER 1		 -0.84 0.3 -0.33
5 AT1G18270 ketose-bisphosphate aldolase class-II family protein -0.84 0.3 -0.31
6 AT5G35370 S-locus lectin protein kinase family protein -0.84 0.32 -0.31
7 AT2G42790 citrate synthase 3 citrate synthase 3 -0.83 0.34 -0.32
8 AT2G21540 SEC14-like 3 SEC14-LIKE 3, SEC14-like 3 0.83 0.3 -0.32
9 AT3G52850 vacuolar sorting receptor homolog 1 ARABIDOPSIS THALIANA EPIDERMAL
GROWTH FACTOR RECEPTOR-LIKE
PROTEIN, ATELP1, ATVSR1, BP-80,
BP80, binding protein of 80 kDa
1;1, BP80B, Green fluorescent seed
1, vacuolar sorting receptor
homolog 1, VACUOLAR SORTING
RECEPTOR 1;1		 -0.83 0.34 -0.32
10 AT4G33150 lysine-ketoglutarate reductase/saccharopine dehydrogenase
bifunctional enzyme		 LKR, LYSINE-KETOGLUTARATE
REDUCTASE/SACCHAROPINE
DEHYDROGENASE, SACCHAROPINE
DEHYDROGENASE		 -0.83 0.28 -0.29
11 AT4G24000 cellulose synthase like G2 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE LIKE G2, cellulose
synthase like G2		 -0.83 0.32 -0.31
12 AT1G30090 Galactose oxidase/kelch repeat superfamily protein -0.83 0.31 -0.33
13 AT3G51840 acyl-CoA oxidase 4 acyl-CoA oxidase 4, ATG6, ATSCX -0.83 0.32 -0.29
14 AT1G27300 unknown protein; Has 54 Blast hits to 54 proteins in 19
species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6;
Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.83 0.32 -0.33
15 AT1G26930 Galactose oxidase/kelch repeat superfamily protein -0.82 0.31 -0.31
16 AT3G26380 Melibiase family protein -0.82 0.32 -0.33
17 AT5G58350 with no lysine (K) kinase 4 with no lysine (K) kinase 4, ZIK2 -0.82 0.31 -0.31
18 AT5G04040 Patatin-like phospholipase family protein SUGAR-DEPENDENT1 -0.82 0.3 -0.31
19 AT3G48000 aldehyde dehydrogenase 2B4 aldehyde dehydrogenase 2, aldehyde
dehydrogenase 2A, aldehyde
dehydrogenase 2B4		 -0.82 0.33 -0.31
20 AT1G74690 IQ-domain 31 IQ-domain 31 0.82 0.33 -0.31
21 AT5G65810 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 cotton Golgi-related 3 0.81 0.3 -0.3
22 AT1G30690 Sec14p-like phosphatidylinositol transfer family protein 0.81 0.3 -0.31
23 AT4G38770 proline-rich protein 4 ARABIDOPSIS THALIANA PROLINE-RICH
PROTEIN 4, proline-rich protein 4		 0.81 0.33 -0.31
24 AT2G06850 xyloglucan endotransglucosylase/hydrolase 4 endoxyloglucan transferase A1,
ENDOXYLOGLUCAN TRANSFERASE,
xyloglucan
endotransglucosylase/hydrolase 4		 0.81 0.32 -0.29
25 AT1G21880 lysm domain GPI-anchored protein 1 precursor lysm domain GPI-anchored protein 1
precursor		 0.8 0.32 -0.32
26 AT3G06810 acyl-CoA dehydrogenase-related IBA-RESPONSE 3 -0.8 0.31 -0.33
27 AT1G17020 senescence-related gene 1 SENESCENCE-RELATED GENE 1,
senescence-related gene 1		 -0.8 0.31 -0.32
28 AT2G31945 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits
to 61 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.8 0.33 -0.32
29 AT4G25000 alpha-amylase-like alpha-amylase-like, ATAMY1 -0.8 0.32 -0.32
30 AT4G29010 Enoyl-CoA hydratase/isomerase family ABNORMAL INFLORESCENCE MERISTEM -0.8 0.32 -0.31
31 AT4G03030 Galactose oxidase/kelch repeat superfamily protein -0.8 0.34 -0.32
32 AT4G37150 methyl esterase 9 ARABIDOPSIS THALIANA METHYL
ESTERASE 9, methyl esterase 9		 -0.8 0.29 -0.33
33 AT1G76150 enoyl-CoA hydratase 2 ATECH2, enoyl-CoA hydratase 2 -0.8 0.3 -0.33
34 AT5G03120 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.8 0.32 -0.32
35 AT3G58100 plasmodesmata callose-binding protein 5 plasmodesmata callose-binding
protein 5		 0.8 0.32 -0.31
36 AT1G27150 Tetratricopeptide repeat (TPR)-like superfamily protein -0.79 0.32 -0.3
37 AT5G02890 HXXXD-type acyl-transferase family protein 0.79 0.31 -0.31
38 AT2G25910 3'-5' exonuclease domain-containing protein / K homology
domain-containing protein / KH domain-containing protein		 -0.79 0.35 -0.3
39 AT1G54100 aldehyde dehydrogenase 7B4 aldehyde dehydrogenase 7B4 -0.79 0.3 -0.31
40 AT1G11545 xyloglucan endotransglucosylase/hydrolase 8 xyloglucan
endotransglucosylase/hydrolase 8		 0.79 0.29 -0.34
41 AT1G29440 SAUR-like auxin-responsive protein family 0.79 0.32 -0.31
42 AT3G48690 alpha/beta-Hydrolases superfamily protein ARABIDOPSIS THALIANA
CARBOXYESTERASE 12, CXE12		 -0.79 0.31 -0.32
43 AT3G53380 Concanavalin A-like lectin protein kinase family protein 0.79 0.3 -0.31
44 AT2G36950 Heavy metal transport/detoxification superfamily protein -0.79 0.31 -0.32
45 AT1G21000 PLATZ transcription factor family protein -0.78 0.31 -0.36
46 AT1G74920 aldehyde dehydrogenase 10A8 aldehyde dehydrogenase 10A8 -0.78 0.33 -0.32
47 AT3G63440 cytokinin oxidase/dehydrogenase 6 CYTOKININ OXIDASE 6, ATCKX7,
cytokinin oxidase/dehydrogenase 6		 0.78 0.31 -0.33
48 AT5G63180 Pectin lyase-like superfamily protein 0.78 0.29 -0.32
49 AT1G20560 acyl activating enzyme 1 acyl activating enzyme 1 -0.78 0.33 -0.32
50 AT2G38400 alanine:glyoxylate aminotransferase 3 alanine:glyoxylate
aminotransferase 3		 -0.78 0.3 -0.31
51 AT4G36040 Chaperone DnaJ-domain superfamily protein DnaJ11 -0.78 0.31 -0.3
52 AT2G24180 cytochrome p450 71b6 cytochrome p450 71b6 -0.78 0.32 -0.32
53 AT1G19950 HVA22-like protein H (ATHVA22H) HVA22-like protein H (ATHVA22H) 0.78 0.31 -0.32
54 AT5G05140 Transcription elongation factor (TFIIS) family protein -0.78 0.33 -0.3
55 AT3G44880 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ACCELERATED CELL DEATH 1, LETHAL
LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE
A OXYGENASE		 -0.78 0.31 -0.33
56 AT5G46180 ornithine-delta-aminotransferase ornithine-delta-aminotransferase -0.78 0.31 -0.33
57 AT2G02710 PAS/LOV protein B PAS/LOV PROTEIN, PAS/LOV PROTEIN
A, PAS/LOV protein B, PAS/LOV
PROTEIN C		 -0.78 0.32 -0.31
58 AT1G52290 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 15, proline-rich
extensin-like receptor kinase 15		 0.78 0.32 -0.31
59 AT4G12880 early nodulin-like protein 19 AtENODL19, early nodulin-like
protein 19		 0.78 0.3 -0.31
60 AT5G18060 SAUR-like auxin-responsive protein family 0.78 0.3 -0.3
61 AT2G47190 myb domain protein 2 MYB DOMAIN PROTEIN 2, myb domain
protein 2		 -0.78 0.3 -0.31
62 AT2G37760 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C8		 -0.78 0.3 -0.34
63 AT4G37310 cytochrome P450, family 81, subfamily H, polypeptide 1 cytochrome P450, family 81,
subfamily H, polypeptide 1		 -0.77 0.32 -0.32
64 AT5G17630 Nucleotide/sugar transporter family protein 0.77 0.32 -0.31
65 AT2G40200 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.77 0.32 -0.34
66 AT5G10650 RING/U-box superfamily protein -0.77 0.31 -0.33
67 AT5G11720 Glycosyl hydrolases family 31 protein -0.77 0.32 -0.32
68 AT3G17250 Protein phosphatase 2C family protein -0.77 0.32 -0.32
69 AT1G76390 ARM repeat superfamily protein plant U-box 43 -0.77 0.32 -0.32
70 AT4G18160 Ca2+ activated outward rectifying K+ channel 6 CA2+ ACTIVATED OUTWARD RECTIFYING
K+ CHANNEL 6, ATTPK3, Ca2+
activated outward rectifying K+
channel 6, TPK3		 -0.77 0.33 -0.31
71 AT2G47950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root, flower; EXPRESSED
DURING: petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G62990.1); Has 22 Blast hits to 22 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.77 0.31 -0.3
72 AT4G20930 6-phosphogluconate dehydrogenase family protein -0.77 0.32 -0.32
73 AT1G04820 tubulin alpha-4 chain TORTIFOLIA 2, tubulin alpha-4
chain		 0.77 0.3 -0.32
74 AT1G04680 Pectin lyase-like superfamily protein 0.76 0.33 -0.3
75 AT1G50010 tubulin alpha-2 chain tubulin alpha-2 chain 0.76 0.34 -0.32
76 AT3G23920 beta-amylase 1 beta-amylase 1, BETA-AMYLASE 7,
TR-BAMY		 -0.76 0.31 -0.31
77 AT1G75680 glycosyl hydrolase 9B7 glycosyl hydrolase 9B7, glycosyl
hydrolase 9B7		 0.76 0.32 -0.3
78 AT2G41820 Leucine-rich repeat protein kinase family protein 0.76 0.32 -0.31
79 AT1G09630 RAB GTPase 11C ARABIDOPSIS RAB GTPASE A2A, RAB
GTPase 11C, ARABIDOPSIS RAB GTPASE
A2A, RAB GTPASE A2A, RAB GTPase
11C		 0.76 0.33 -0.32
80 AT5G24160 squalene monoxygenase 6 squalene monoxygenase 6 -0.76 0.31 -0.32
81 AT1G55020 lipoxygenase 1 ARABIDOPSIS LIPOXYGENASE 1,
lipoxygenase 1		 -0.76 0.32 -0.31
82 AT1G50600 scarecrow-like 5 scarecrow-like 5 -0.76 0.32 -0.3
83 AT1G63720 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in
96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi
- 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79
(source: NCBI BLink).		 -0.76 0.34 -0.31
84 AT4G38810 Calcium-binding EF-hand family protein -0.76 0.33 -0.33
85 AT1G64390 glycosyl hydrolase 9C2 glycosyl hydrolase 9C2, glycosyl
hydrolase 9C2		 0.76 0.31 -0.31
86 AT4G18170 WRKY DNA-binding protein 28 ATWRKY28, WRKY DNA-binding protein
28		 -0.76 0.32 -0.33
87 AT4G27410 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 72, RESPONSIVE TO
DESICCATION 26		 -0.76 0.31 -0.31
88 AT5G17860 calcium exchanger 7 calcium exchanger 7 -0.76 0.31 -0.31
89 AT1G23080 Auxin efflux carrier family protein ARABIDOPSIS PIN-FORMED 7,
PIN-FORMED 7		 0.76 0.31 -0.32
90 AT2G44130 Galactose oxidase/kelch repeat superfamily protein -0.76 0.29 -0.32
91 AT5G64260 EXORDIUM like 2 EXORDIUM like 2 -0.76 0.29 -0.33
92 AT4G14010 ralf-like 32 ralf-like 32 -0.75 0.32 -0.32
93 AT1G48610 AT hook motif-containing protein 0.75 0.3 -0.3
94 AT3G16190 Isochorismatase family protein -0.75 0.31 -0.34
95 AT4G30450 glycine-rich protein -0.75 0.33 -0.32
96 AT1G52890 NAC domain containing protein 19 NAC domain containing protein 19,
NAC domain containing protein 19		 -0.75 0.3 -0.31
97 AT5G38530 tryptophan synthase beta type 2 tryptophan synthase beta type 2 -0.75 0.29 -0.3
98 AT5G39520 Protein of unknown function (DUF1997) -0.75 0.32 -0.32
99 AT1G09960 sucrose transporter 4 SUCROSE TRANSPORTER 4, SUCROSE
TRANSPORTER 4, SUCROSE TRANSPORTER
4, sucrose transporter 4		 -0.75 0.33 -0.3
100 AT1G19680 RING/U-box superfamily protein -0.75 0.31 -0.33
101 AT1G04520 plasmodesmata-located protein 2 plasmodesmata-located protein 2 0.75 0.34 -0.31
102 AT2G04780 FASCICLIN-like arabinoogalactan 7 FASCICLIN-like arabinoogalactan 7 0.75 0.32 -0.33
103 AT1G07040 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in
187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi
- 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140
(source: NCBI BLink).		 -0.75 0.31 -0.33
104 AT5G06370 NC domain-containing protein-related -0.75 0.31 -0.31
105 AT1G13170 OSBP(oxysterol binding protein)-related protein 1D OSBP(oxysterol binding
protein)-related protein 1D		 0.74 0.32 -0.33
106 AT4G38370 Phosphoglycerate mutase family protein 0.74 0.3 -0.33
107 AT4G36760 aminopeptidase P1 aminopeptidase P1, ARABIDOPSIS
THALIANA AMINOPEPTIDASE P1		 -0.74 0.3 -0.32
108 AT1G02305 Cysteine proteinases superfamily protein -0.74 0.28 -0.31
109 AT4G04960 Concanavalin A-like lectin protein kinase family protein -0.74 0.32 -0.32
110 AT1G08810 myb domain protein 60 myb domain protein 60, myb domain
protein 60		 0.74 0.32 -0.32
111 AT1G75500 Walls Are Thin 1 Walls Are Thin 1 0.74 0.31 -0.33
112 AT5G45670 GDSL-like Lipase/Acylhydrolase superfamily protein 0.74 0.3 -0.32
113 AT3G07870 F-box and associated interaction domains-containing protein -0.74 0.33 -0.31
114 AT1G64640 early nodulin-like protein 8 AtENODL8, early nodulin-like
protein 8		 0.74 0.31 -0.32
115 AT5G14590 Isocitrate/isopropylmalate dehydrogenase family protein -0.73 0.3 -0.31
116 AT5G25460 Protein of unknown function, DUF642 0.73 0.31 -0.34
117 AT4G30460 glycine-rich protein -0.73 0.33 -0.32
118 AT1G29450 SAUR-like auxin-responsive protein family 0.73 0.3 -0.33
119 AT1G19940 glycosyl hydrolase 9B5 glycosyl hydrolase 9B5, glycosyl
hydrolase 9B5		 0.73 0.28 -0.32
120 AT3G44720 arogenate dehydratase 4 arogenate dehydratase 4 -0.73 0.35 -0.28
121 AT2G29450 glutathione S-transferase tau 5 AT103-1A, ARABIDOPSIS THALIANA
GLUTATHIONE S-TRANSFERASE TAU 1,
glutathione S-transferase tau 5,
glutathione S-transferase tau 5		 -0.73 0.31 -0.31
122 AT2G21410 vacuolar proton ATPase A2 vacuolar proton ATPase A2 -0.73 0.31 -0.31
123 AT2G11910 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to
31060 proteins in 1576 species: Archae - 765; Bacteria -
32670; Metazoa - 21164; Fungi - 12252; Plants - 4238;
Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI
BLink).		 0.73 0.28 -0.33
124 AT3G46490 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.73 0.3 -0.32
125 AT5G11090 serine-rich protein-related -0.73 0.31 -0.32
126 AT5G48870 Small nuclear ribonucleoprotein family protein SUPERSENSITIVE TO ABA AND DROUGHT
1		 0.73 0.31 -0.32
127 AT4G32150 vesicle-associated membrane protein 711 vesicle-associated membrane
protein 711, vesicle-associated
membrane protein 711		 -0.73 0.32 -0.33
128 AT1G18720 Protein of unknown function (DUF962) -0.73 0.31 -0.3
129 AT2G37640 Barwin-like endoglucanases superfamily protein EXPANSIN 3, ARABIDOPSIS THALIANA
EXPANSIN A3, ATHEXP ALPHA 1.9,
EXP3		 0.73 0.31 -0.31
130 AT2G33150 peroxisomal 3-ketoacyl-CoA thiolase 3 3-KETOACYL-COA THIOLASE 2,
PEROXISOME DEFECTIVE 1,
peroxisomal 3-ketoacyl-CoA
thiolase 3		 -0.73 0.31 -0.3
131 AT4G30020 PA-domain containing subtilase family protein 0.72 0.32 -0.3
132 AT5G48900 Pectin lyase-like superfamily protein 0.72 0.33 -0.32
133 AT5G63410 Leucine-rich repeat protein kinase family protein 0.72 0.31 -0.31
134 AT1G20580 Small nuclear ribonucleoprotein family protein 0.72 0.31 -0.33
135 AT2G40610 expansin A8 ATEXP8, expansin A8, ATHEXP ALPHA
1.11, EXP8, expansin A8		 0.72 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0168 MST_2023.2 - - - 0.72 0.44 -0.46