AT5G63420 : embryo defective 2746
Query Information
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AGICode AT5G63420
Description RNA-metabolising metallo-beta-lactamase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 1 0.3 -0.33
2 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.92 0.32 -0.31
3 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.88 0.31 -0.34
4 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.88 0.31 -0.31
5 AT5G42480 Chaperone DnaJ-domain superfamily protein ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6		 0.86 0.3 -0.31
6 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.86 0.28 -0.31
7 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.86 0.3 -0.33
8 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.86 0.3 -0.32
9 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.85 0.31 -0.31
10 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.85 0.3 -0.32
11 AT3G21300 RNA methyltransferase family protein 0.85 0.31 -0.32
12 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.85 0.34 -0.33
13 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.85 0.33 -0.32
14 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.85 0.32 -0.33
15 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.85 0.32 -0.31
16 AT2G04270 RNAse E/G-like RNAse E/G-like 0.84 0.32 -0.3
17 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.84 0.3 -0.3
18 AT1G73090 unknown protein; Has 28 Blast hits to 28 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.83 0.32 -0.31
19 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.83 0.31 -0.33
20 AT3G43610 Spc97 / Spc98 family of spindle pole body (SBP) component 0.83 0.35 -0.3
21 AT4G07390 Mannose-P-dolichol utilization defect 1 protein -0.82 0.29 -0.33
22 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.82 0.31 -0.31
23 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.82 0.3 -0.33
24 AT4G02510 translocon at the outer envelope membrane of chloroplasts
159		 ATTOC159, PLASTID PROTEIN IMPORT
2, translocon at the outer
envelope membrane of chloroplasts
159, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
160, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
86		 0.82 0.32 -0.32
25 AT2G47220 DOMAIN OF UNKNOWN FUNCTION 724 5 DOMAIN OF UNKNOWN FUNCTION 724 5,
DOMAIN OF UNKNOWN FUNCTION 724 5		 0.82 0.33 -0.31
26 AT3G57430 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 84 0.82 0.29 -0.31
27 AT2G38040 acetyl Co-enzyme a carboxylase carboxyltransferase alpha
subunit		 acetyl Co-enzyme a carboxylase
carboxyltransferase alpha subunit		 0.82 0.31 -0.3
28 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.81 0.3 -0.32
29 AT1G59720 Tetratricopeptide repeat (TPR)-like superfamily protein CHLORORESPIRATORY REDUCTION28 0.81 0.32 -0.32
30 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138		 0.81 0.33 -0.3
31 AT4G30000 Dihydropterin pyrophosphokinase / Dihydropteroate synthase 0.81 0.32 -0.34
32 AT3G48500 Nucleic acid-binding, OB-fold-like protein PIGMENT DEFECTIVE 312, PLASTID
TRANSCRIPTIONALLY ACTIVE 10		 0.81 0.32 -0.31
33 AT5G15760 Ribosomal protein PSRP-3/Ycf65 0.8 0.31 -0.3
34 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 0.8 0.28 -0.33
35 AT5G19210 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.8 0.32 -0.31
36 AT5G59140 BTB/POZ domain-containing protein -0.79 0.32 -0.32
37 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.79 0.31 -0.33
38 AT1G10850 Leucine-rich repeat protein kinase family protein 0.79 0.29 -0.32
39 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 0.79 0.32 -0.31
40 AT5G27440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: shoot apex, shoot, flower, seed;
EXPRESSED DURING: petal differentiation and expansion
stage, E expanded cotyledon stage; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.79 0.31 -0.32
41 AT1G42550 plastid movement impaired1 PLASTID MOVEMENT IMPAIRED1 0.79 0.3 -0.33
42 AT3G29375 XH domain-containing protein 0.79 0.3 -0.32
43 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.79 0.31 -0.35
44 AT3G16260 tRNAse Z4 tRNAse Z4 0.79 0.3 -0.3
45 AT1G63680 acid-amino acid ligases;ligases;ATP binding;ATP
binding;ligases		 ALBINO OR PALE-GREEN 13, ATMURE,
MURE, PIGMENT DEFECTIVE EMBRYO 316		 0.79 0.3 -0.31
46 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 CLUMPED CHLOROPLASTS 1, Phox2 0.79 0.31 -0.32
47 AT1G77920 bZIP transcription factor family protein -0.78 0.3 -0.33
48 AT4G26670 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.78 0.31 -0.31
49 AT4G18750 Pentatricopeptide repeat (PPR) superfamily protein DEFECTIVELY ORGANIZED TRIBUTARIES
4		 0.78 0.3 -0.3
50 AT2G45850 AT hook motif DNA-binding family protein 0.78 0.31 -0.31
51 AT1G17080 Ribosomal protein L18ae family -0.78 0.33 -0.34
52 AT1G30610 pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2279, EMBRYO
DEFECTIVE 88		 0.78 0.32 -0.3
53 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 0.77 0.31 -0.32
54 AT2G47520 Integrase-type DNA-binding superfamily protein Arabidopsis thaliana ethylene
response factor 71, ethylene
response factor 71, HYPOXIA
RESPONSIVE ERF (ETHYLENE RESPONSE
FACTOR) 2		 -0.77 0.31 -0.32
55 AT1G79090 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Topoisomerase II-associated protein PAT1
(InterPro:IPR019167); BEST Arabidopsis thaliana protein
match is: Topoisomerase II-associated protein PAT1
(TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.77 0.33 -0.31
56 AT5G07220 BCL-2-associated athanogene 3 BCL-2-associated athanogene 3,
BCL-2-associated athanogene 3		 -0.77 0.31 -0.34
57 AT5G10470 kinesin like protein for actin based chloroplast movement 1 kinesin like protein for actin
based chloroplast movement 1,
KINESIN CDKA;1 ASSOCIATED 1		 0.77 0.33 -0.32
58 AT1G79080 Pentatricopeptide repeat (PPR) superfamily protein 0.77 0.33 -0.33
59 AT1G28440 HAESA-like 1 HAESA-like 1 0.77 0.3 -0.3
60 AT3G50900 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits
to 45 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.76 0.3 -0.31
61 AT1G77370 Glutaredoxin family protein -0.76 0.31 -0.33
62 AT2G31200 actin depolymerizing factor 6 actin depolymerizing factor 6,
ATADF6		 -0.76 0.34 -0.31
63 AT2G27450 nitrilase-like protein 1 ATNLP1, CPA, nitrilase-like
protein 1		 -0.75 0.34 -0.3
64 AT1G13280 allene oxide cyclase 4 allene oxide cyclase 4 -0.75 0.31 -0.31
65 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.75 0.33 -0.32
66 AT4G33780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40
Blast hits to 40 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.75 0.33 -0.3
67 AT2G39725 LYR family of Fe/S cluster biogenesis protein -0.75 0.34 -0.32
68 AT1G68300 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.75 0.31 -0.31
69 AT3G11100 sequence-specific DNA binding transcription factors -0.74 0.32 -0.31
70 AT1G26550 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.74 0.33 -0.32
71 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.74 0.32 -0.32
72 AT3G45130 lanosterol synthase 1 lanosterol synthase 1 -0.73 0.32 -0.33
73 AT5G61640 peptidemethionine sulfoxide reductase 1 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE A1,
peptidemethionine sulfoxide
reductase 1		 -0.73 0.32 -0.31
74 AT1G74590 glutathione S-transferase TAU 10 GLUTATHIONE S-TRANSFERASE TAU 10,
glutathione S-transferase TAU 10		 -0.73 0.32 -0.3
75 AT2G36330 Uncharacterised protein family (UPF0497) -0.73 0.29 -0.33
76 AT5G07470 peptidemethionine sulfoxide reductase 3 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE 3,
peptidemethionine sulfoxide
reductase 3		 -0.72 0.32 -0.33
77 AT1G47128 Granulin repeat cysteine protease family protein responsive to dehydration 21,
RESPONSIVE TO DEHYDRATION 21A		 -0.72 0.31 -0.33
78 AT3G59760 O-acetylserine (thiol) lyase isoform C ARABIDOPSIS THALIANA
CYSTEINSYNTHASE-C, O-acetylserine
(thiol) lyase isoform C		 -0.72 0.34 -0.3
79 AT5G04750 F1F0-ATPase inhibitor protein, putative -0.72 0.35 -0.3
80 AT4G10100 co-factor for nitrate, reductase and xanthine dehydrogenase
7		 co-factor for nitrate, reductase
and xanthine dehydrogenase 7, SIR5		 -0.72 0.32 -0.32
81 AT5G11970 Protein of unknown function (DUF3511) -0.72 0.31 -0.29
82 AT2G24200 Cytosol aminopeptidase family protein -0.72 0.32 -0.3
83 AT1G23730 beta carbonic anhydrase 3 BETA CARBONIC ANHYDRASE 3, beta
carbonic anhydrase 3		 -0.71 0.32 -0.31
84 AT1G06800 alpha/beta-Hydrolases superfamily protein phospholipase A I gamma 1 -0.71 0.33 -0.31
85 AT3G11840 plant U-box 24 plant U-box 24 -0.71 0.33 -0.3
86 AT2G22480 phosphofructokinase 5 phosphofructokinase 5 -0.71 0.34 -0.3
87 AT1G61110 NAC domain containing protein 25 NAC domain containing protein 25,
NAC domain containing protein 25		 -0.71 0.33 -0.3
88 AT3G55600 Membrane fusion protein Use1 -0.71 0.33 -0.32
89 AT1G71190 senescence associated gene 18 senescence associated gene 18 -0.71 0.33 -0.31
90 AT5G45130 RAB homolog 1 ARABIDOPSIS RAB HOMOLOG F2A,
ATRAB5A, ATRABF2A, RAB HOMOLOG
F2A, RAB5A, RABF2A, RAB homolog 1		 -0.71 0.33 -0.32
91 AT1G55920 serine acetyltransferase 2;1 serine acetyltransferase 2;1,
SERINE ACETYLTRANSFERASE 1, SERINE
ACETYLTRANSFERASE 5, serine
acetyltransferase 2;1		 -0.7 0.32 -0.32
92 AT3G17940 Galactose mutarotase-like superfamily protein -0.7 0.31 -0.34
93 AT5G43280 delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
DELTA(3,5),DELTA(2,4)-DIENOYL-COA
ISOMERASE 1		 -0.7 0.31 -0.3
94 AT2G25280 CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of
ErbB2-driven cell motility (Memo), related
(InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins
in 474 species: Archae - 213; Bacteria - 366; Metazoa -
159; Fungi - 135; Plants - 54; Viruses - 0; Other
Eukaryotes - 147 (source: NCBI BLink).		 -0.7 0.3 -0.32
95 AT4G29130 hexokinase 1 ARABIDOPSIS THALIANA HEXOKINASE 1,
GLUCOSE INSENSITIVE 2, hexokinase
1		 -0.7 0.33 -0.32
96 AT3G54840 Ras-related small GTP-binding family protein ARA-6, ARA6, ATRAB5C, ATRABF1,
RABF1		 -0.7 0.31 -0.32