AT5G63050 : embryo defective 2759
Query Information
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AGICode AT5G63050
Description embryo defective 2759
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G63050 embryo defective 2759 embryo defective 2759 1 0.31 -0.31
2 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.94 0.34 -0.33
3 AT4G26370 antitermination NusB domain-containing protein 0.93 0.33 -0.31
4 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.93 0.29 -0.34
5 AT2G43030 Ribosomal protein L3 family protein 0.93 0.32 -0.28
6 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.93 0.32 -0.33
7 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.33 -0.31
8 AT4G34290 SWIB/MDM2 domain superfamily protein 0.91 0.29 -0.3
9 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.91 0.33 -0.34
10 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.91 0.34 -0.32
11 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.91 0.3 -0.32
12 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.91 0.32 -0.32
13 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.91 0.33 -0.3
14 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.91 0.33 -0.33
15 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.9 0.31 -0.32
16 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.9 0.32 -0.3
17 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.9 0.31 -0.3
18 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.9 0.3 -0.32
19 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.9 0.3 -0.32
20 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.9 0.32 -0.3
21 AT2G21860 violaxanthin de-epoxidase-related 0.9 0.29 -0.31
22 AT4G17740 Peptidase S41 family protein 0.89 0.32 -0.3
23 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.89 0.32 -0.32
24 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.89 0.3 -0.35
25 AT1G70200 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.32 -0.33
26 AT4G37510 Ribonuclease III family protein 0.89 0.33 -0.3
27 AT2G14880 SWIB/MDM2 domain superfamily protein 0.89 0.31 -0.32
28 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.89 0.33 -0.32
29 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.89 0.32 -0.31
30 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.31 -0.31
31 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.89 0.32 -0.32
32 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.88 0.33 -0.29
33 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.88 0.33 -0.31
34 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.88 0.33 -0.33
35 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.88 0.3 -0.35
36 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.88 0.31 -0.33
37 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.88 0.3 -0.32
38 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.88 0.33 -0.31
39 AT2G24060 Translation initiation factor 3 protein 0.88 0.3 -0.32
40 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.31 -0.31
41 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.88 0.32 -0.31
42 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.32 -0.32
43 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.88 0.31 -0.32
44 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.88 0.32 -0.32
45 AT1G06190 Rho termination factor 0.87 0.3 -0.34
46 AT2G28605 Photosystem II reaction center PsbP family protein 0.87 0.3 -0.31
47 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.87 0.31 -0.33
48 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.87 0.31 -0.3
49 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.87 0.32 -0.3
50 AT1G15690 Inorganic H pyrophosphatase family protein ARABIDOPSIS THALIANA V-PPASE 3,
AtVHP1;1, AVP-3, AVP1, FUGU 5		 0.87 0.32 -0.32
51 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.87 0.34 -0.33
52 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.87 0.33 -0.31
53 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.87 0.32 -0.32
54 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.87 0.31 -0.32
55 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.87 0.31 -0.33
56 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.87 0.3 -0.31
57 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.87 0.3 -0.32
58 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.87 0.32 -0.33
59 AT3G56330 N2,N2-dimethylguanosine tRNA methyltransferase 0.87 0.31 -0.31
60 AT4G36390 Methylthiotransferase 0.86 0.32 -0.32
61 AT2G45270 glycoprotease 1 glycoprotease 1 0.86 0.33 -0.31
62 AT5G42480 Chaperone DnaJ-domain superfamily protein ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6		 0.86 0.32 -0.32
63 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.86 0.31 -0.33
64 AT3G28040 Leucine-rich receptor-like protein kinase family protein 0.86 0.31 -0.3
65 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.86 0.33 -0.32
66 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.86 0.31 -0.33
67 AT3G21300 RNA methyltransferase family protein 0.86 0.32 -0.34
68 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.32 -0.31
69 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.86 0.32 -0.32
70 AT1G36390 Co-chaperone GrpE family protein 0.86 0.32 -0.31
71 AT1G74850 plastid transcriptionally active 2 PIGMENT DEFECTIVE 343, plastid
transcriptionally active 2		 0.86 0.33 -0.33
72 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.86 0.31 -0.33
73 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.86 0.29 -0.33
74 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.85 0.31 -0.3
75 AT5G59500 protein C-terminal S-isoprenylcysteine carboxyl
O-methyltransferases		 0.85 0.32 -0.33
76 AT1G60230 Radical SAM superfamily protein 0.85 0.33 -0.3
77 AT4G21750 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 MERISTEM LAYER 1 0.85 0.31 -0.3
78 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.85 0.34 -0.31
79 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.85 0.32 -0.31
80 AT1G31330 photosystem I subunit F photosystem I subunit F 0.85 0.33 -0.33
81 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.85 0.3 -0.33
82 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.85 0.33 -0.32
83 AT2G39670 Radical SAM superfamily protein 0.85 0.31 -0.33
84 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 0.85 0.31 -0.32
85 AT5G06750 Protein phosphatase 2C family protein -0.84 0.3 -0.31
86 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.8 0.33 -0.34
87 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.76 0.32 -0.32
88 AT2G26300 G protein alpha subunit 1 ARABIDOPSIS THALIANA G PROTEIN
ALPHA SUBUNIT 1, G protein alpha
subunit 1, G PROTEIN ALPHA SUBUNIT
1		 -0.76 0.34 -0.33
89 AT3G53480 pleiotropic drug resistance 9 ATP-binding cassette G37,
PLEIOTROPIC DRUG RESISTANCE 9,
pleiotropic drug resistance 9,
polar auxin transport inhibitor
sensitive 1		 -0.76 0.32 -0.31
90 AT5G40690 CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
(InterPro:IPR018247); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G41730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.74 0.3 -0.33
91 AT1G74590 glutathione S-transferase TAU 10 GLUTATHIONE S-TRANSFERASE TAU 10,
glutathione S-transferase TAU 10		 -0.74 0.31 -0.35
92 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.74 0.32 -0.31
93 AT3G28850 Glutaredoxin family protein -0.74 0.32 -0.31
94 AT1G22800 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.32 -0.33
95 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.73 0.32 -0.33
96 AT2G01650 plant UBX domain-containing protein 2 plant UBX domain-containing
protein 2		 -0.73 0.32 -0.34
97 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.73 0.33 -0.31
98 AT3G62920 unknown protein; Has 25 Blast hits to 25 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.73 0.31 -0.31
99 AT4G33780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40
Blast hits to 40 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.33 -0.31
100 AT1G77920 bZIP transcription factor family protein -0.72 0.32 -0.32
101 AT2G40110 Yippee family putative zinc-binding protein -0.72 0.31 -0.31
102 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.71 0.29 -0.31
103 AT3G49350 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.71 0.34 -0.32
104 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.69 0.33 -0.31
105 AT3G21710 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.33 -0.3
106 AT5G37740 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.69 0.33 -0.31
107 AT5G66250 kinectin-related -0.68 0.32 -0.31
108 AT1G79180 myb domain protein 63 MYB DOMAIN PROTEIN 63, myb domain
protein 63		 -0.68 0.34 -0.31
109 AT4G29270 HAD superfamily, subfamily IIIB acid phosphatase -0.68 0.33 -0.32
110 AT3G61850 Dof-type zinc finger DNA-binding family protein dof affecting germination 1 -0.68 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
111 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.79 0.45 -0.43 C0120
112 C0135 Kaempferol-hexosyl-dirhamnoside - - - -0.72 0.44 -0.44